Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47364 * 2 1 4 4 C 1.52995 * 109.46729 * 119.99757 * 2 1 3 5 5 C 1.53008 * 109.46959 * 184.99859 * 4 2 1 6 6 C 1.50705 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.38236 * 120.00070 * 269.72769 * 6 5 4 8 8 C 1.38229 * 119.99988 * 179.76858 * 7 6 5 9 9 C 1.38236 * 119.99949 * 0.50658 * 8 7 6 10 10 C 1.38234 * 120.00093 * 359.74670 * 9 8 7 11 11 C 1.38233 * 119.99877 * 0.02562 * 10 9 8 12 12 N 1.46499 * 109.47044 * 239.99748 * 2 1 3 13 13 C 1.34778 * 119.99867 * 85.00738 * 12 2 1 14 14 O 1.21609 * 119.99939 * 359.97438 * 13 12 2 15 15 C 1.47421 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.39681 * 120.21901 * 359.96940 * 15 13 12 17 17 C 1.37808 * 119.94286 * 180.02562 * 16 15 13 18 18 C 1.38654 * 120.37767 * 0.02562 * 17 16 15 19 19 C 1.37909 * 120.44334 * 359.97438 * 18 17 16 20 20 C 1.39109 * 120.04959 * 0.02562 * 19 18 17 21 21 S 1.76204 * 120.19269 * 179.97438 * 20 19 18 22 22 C 1.76202 * 99.99694 * 6.88400 * 21 20 19 23 23 H 1.07998 * 120.00125 * 5.65292 * 22 21 20 24 24 C 1.38802 * 119.99933 * 185.66292 * 22 21 20 25 25 N 1.31556 * 120.00301 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00198 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46752 * 89.99632 * 26 24 22 28 28 H 1.48490 * 109.47122 * 209.99672 * 26 24 22 29 29 H 1.48502 * 109.46765 * 329.99906 * 26 24 22 30 30 H 1.09001 * 109.46695 * 59.99631 * 1 2 3 31 31 H 1.08990 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47274 * 300.00450 * 1 2 3 33 33 H 1.09000 * 109.47868 * 304.99726 * 4 2 1 34 34 H 1.09001 * 109.47585 * 65.00309 * 4 2 1 35 35 H 1.08994 * 109.47383 * 300.00411 * 5 4 2 36 36 H 1.09002 * 109.46592 * 60.00405 * 5 4 2 37 37 H 1.08005 * 119.99826 * 359.97438 * 7 6 5 38 38 H 1.08004 * 120.00287 * 180.22756 * 8 7 6 39 39 H 1.08003 * 120.00377 * 179.72251 * 9 8 7 40 40 H 1.07997 * 120.00425 * 179.97438 * 10 9 8 41 41 H 1.08003 * 120.00032 * 179.97438 * 11 10 9 42 42 H 0.96999 * 120.00020 * 264.99893 * 12 2 1 43 43 H 1.08003 * 120.02265 * 0.02562 * 16 15 13 44 44 H 1.07998 * 119.80890 * 180.02562 * 17 16 15 45 45 H 1.08007 * 119.77710 * 180.27598 * 18 17 16 46 46 H 1.08005 * 119.97866 * 180.02562 * 19 18 17 47 47 H 0.96996 * 120.00217 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3242 2.5440 7 6 4.2045 -0.6337 3.7336 8 6 4.6607 -1.2870 4.8632 9 6 4.9894 -2.6282 4.8006 10 6 4.8570 -3.3174 3.6097 11 6 4.3964 -2.6653 2.4812 12 7 2.0183 -0.6907 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1616 -2.4118 15 6 2.6380 -0.7134 -3.5609 16 6 2.9715 -2.0686 -3.5033 17 6 3.4303 -2.7127 -4.6320 18 6 3.5640 -2.0229 -5.8273 19 6 3.2394 -0.6847 -5.9020 20 6 2.7746 -0.0166 -4.7738 21 16 2.3593 1.6933 -4.8647 22 6 2.5216 1.9557 -6.5996 23 1 2.7205 1.1212 -7.2556 24 6 2.3940 3.2349 -7.1229 25 7 2.1514 4.2514 -6.3239 26 14 2.5668 3.5132 -8.9621 27 1 1.2365 3.3841 -9.6093 28 1 3.1070 4.8743 -9.2081 29 1 3.4941 2.5022 -9.5306 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2057 35 1 3.9995 -1.0728 0.4261 36 1 3.8531 0.4370 1.3574 37 1 3.9522 0.4154 3.7813 38 1 4.7645 -0.7484 5.7936 39 1 5.3501 -3.1376 5.6820 40 1 5.1143 -4.3652 3.5606 41 1 4.2933 -3.2037 1.5506 42 1 2.2490 -1.6318 -1.1525 43 1 2.8698 -2.6112 -2.5750 44 1 3.6871 -3.7606 -4.5851 45 1 3.9203 -2.5384 -6.7070 46 1 3.3461 -0.1548 -6.8370 47 1 2.0618 5.1453 -6.6897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021706892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = 0.083658 kcal Electronic energy + Delta-G solvation = -27615.666841 eV Core-core repulsion = 23853.680625 eV Total energy + Delta-G solvation = -3761.986216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.81122 -39.35075 -37.66492 -36.15134 -33.39017 -32.74740 -31.58951 -31.10699 -30.26573 -29.79107 -28.55339 -25.81867 -24.47841 -23.40130 -22.79066 -21.99571 -21.22566 -20.79087 -20.05971 -18.17438 -17.15849 -16.97934 -16.21067 -15.76525 -15.43499 -15.30200 -15.13913 -14.55417 -14.44109 -14.19994 -13.79923 -13.70098 -13.65732 -13.54226 -13.27112 -13.00586 -12.88910 -12.84678 -12.50489 -11.99446 -11.90660 -11.64893 -11.57170 -11.47180 -11.23835 -11.19526 -11.12468 -10.95795 -10.91527 -10.68210 -10.31749 -9.79668 -9.62279 -9.47938 -9.14673 -8.94302 -8.74261 -8.69051 -8.32440 -8.04421 -6.52561 -6.45545 -4.15944 1.13730 1.17582 1.54881 2.02560 3.10839 3.13141 3.19795 3.42427 3.54466 3.55394 3.56216 4.07135 4.44587 4.50122 4.61641 4.75850 4.87805 4.93546 4.95367 4.99418 5.04089 5.14068 5.28878 5.31632 5.33752 5.40207 5.47448 5.55158 5.60352 5.61172 5.68913 5.79088 5.83169 5.87318 5.91765 6.04766 6.12103 6.20825 6.24718 6.28671 6.34940 6.39917 6.45380 6.60569 6.79155 6.83095 6.88233 7.04432 7.14297 7.45383 7.59914 7.95211 8.16772 8.83615 9.00715 10.57657 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.002234 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.467987 B =12532.697555 C =13352.887321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.117 4.117 5 C -0.085 4.085 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.119 4.119 11 C -0.118 4.118 12 N -0.733 5.733 13 C 0.553 3.447 14 O -0.509 6.509 15 C -0.177 4.177 16 C -0.061 4.061 17 C -0.187 4.187 18 C -0.077 4.077 19 C -0.153 4.153 20 C -0.057 4.057 21 S 0.185 5.815 22 C -0.596 4.596 23 H 0.091 0.909 24 C 0.083 3.917 25 N -0.858 5.858 26 Si 0.919 3.081 27 H -0.273 1.273 28 H -0.280 1.280 29 H -0.268 1.268 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.393 0.607 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.138 0.862 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -14.413 18.115 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.122 4.122 6 C -0.076 4.076 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.388 5.388 13 C 0.342 3.658 14 O -0.386 6.386 15 C -0.192 4.192 16 C -0.081 4.081 17 C -0.212 4.212 18 C -0.100 4.100 19 C -0.179 4.179 20 C -0.177 4.177 21 S 0.449 5.551 22 C -0.742 4.742 23 H 0.108 0.892 24 C -0.128 4.128 25 N -0.491 5.491 26 Si 0.744 3.256 27 H -0.199 1.199 28 H -0.205 1.205 29 H -0.192 1.192 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.227 0.773 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.156 0.844 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.050 -12.097 18.869 22.507 hybrid contribution 0.653 -1.370 -2.059 2.558 sum 2.703 -13.467 16.810 21.708 Atomic orbital electron populations 1.22180 0.95547 1.01808 1.02641 1.20873 0.93823 0.97736 0.83619 0.89265 1.21866 0.94675 1.01264 0.97712 1.20671 0.95576 1.00846 0.95094 1.19991 0.98121 0.94093 0.95369 1.21104 1.00008 1.00003 0.92528 1.21147 0.99378 0.94847 0.98369 1.21130 1.00938 0.94779 0.97921 1.21148 0.99664 0.99844 0.93062 1.21095 0.99609 0.94271 0.98615 1.45943 1.69690 1.13617 1.09517 1.18298 0.77947 0.86656 0.82884 1.90780 1.49128 1.15151 1.83531 1.19139 1.12631 0.94212 0.93248 1.20884 0.96833 0.92938 0.97486 1.20626 1.07712 0.99310 0.93538 1.21080 0.97489 0.94284 0.97098 1.21437 1.02591 0.94705 0.99121 1.23100 0.96974 1.03456 0.94174 1.84753 1.70048 0.94042 1.06207 1.24060 1.57202 0.97109 0.95873 0.89180 1.25096 0.93195 0.94744 0.99733 1.69974 1.43159 1.00156 1.35777 0.86155 0.78903 0.78015 0.82522 1.19880 1.20484 1.19246 0.91548 0.92814 0.92088 0.90458 0.91404 0.90472 0.90604 0.86047 0.86255 0.86382 0.86233 0.86046 0.77269 0.87258 0.87145 0.87073 0.84413 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.55 16 2 C 0.14 1.72 2.57 -67.93 -0.17 1.54 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 4 C -0.12 -1.04 4.74 -26.73 -0.13 -1.16 16 5 C -0.08 -0.79 5.23 -27.88 -0.15 -0.93 16 6 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 7 C -0.12 -1.05 9.70 -39.59 -0.38 -1.44 16 8 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 9 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 10 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 11 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 12 N -0.73 -9.87 4.48 -54.88 -0.25 -10.12 16 13 C 0.55 10.38 7.71 -12.52 -0.10 10.28 16 14 O -0.51 -11.60 13.43 5.27 0.07 -11.53 16 15 C -0.18 -3.44 5.89 -104.75 -0.62 -4.05 16 16 C -0.06 -0.95 9.53 -39.20 -0.37 -1.32 16 17 C -0.19 -2.85 10.02 -39.59 -0.40 -3.25 16 18 C -0.08 -1.32 10.02 -39.55 -0.40 -1.71 16 19 C -0.15 -3.20 9.22 -39.38 -0.36 -3.56 16 20 C -0.06 -1.30 6.15 -38.39 -0.24 -1.53 16 21 S 0.19 4.94 18.56 -107.50 -2.00 2.95 16 22 C -0.60 -16.42 9.00 30.94 0.28 -16.14 16 23 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 24 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 25 N -0.86 -24.73 13.22 55.49 0.73 -24.00 16 26 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.39 4.23 6.63 -40.82 -0.27 3.96 16 43 H 0.11 1.26 6.40 -52.48 -0.34 0.93 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.14 3.01 5.04 -52.48 -0.26 2.74 16 47 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -32.07 402.15 -11.84 -43.91 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.55 Total: 6.51 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -4.89 Total: -29.46 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.49 Total: -34.12 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.07 -11.84 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.994 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds