Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47364 * 2 1 4 4 C 1.52995 * 109.46729 * 119.99757 * 2 1 3 5 5 C 1.53008 * 109.46959 * 184.99859 * 4 2 1 6 6 C 1.50705 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.38236 * 120.00070 * 269.72769 * 6 5 4 8 8 C 1.38229 * 119.99988 * 179.76858 * 7 6 5 9 9 C 1.38236 * 119.99949 * 0.50658 * 8 7 6 10 10 C 1.38234 * 120.00093 * 359.74670 * 9 8 7 11 11 C 1.38233 * 119.99877 * 0.02562 * 10 9 8 12 12 N 1.46499 * 109.47044 * 239.99748 * 2 1 3 13 13 C 1.34778 * 119.99867 * 85.00738 * 12 2 1 14 14 O 1.21609 * 119.99939 * 359.97438 * 13 12 2 15 15 C 1.47421 * 119.99900 * 180.02562 * 13 12 2 16 16 C 1.39681 * 120.21901 * 359.96940 * 15 13 12 17 17 C 1.37808 * 119.94286 * 180.02562 * 16 15 13 18 18 C 1.38654 * 120.37767 * 0.02562 * 17 16 15 19 19 C 1.37909 * 120.44334 * 359.97438 * 18 17 16 20 20 C 1.39109 * 120.04959 * 0.02562 * 19 18 17 21 21 S 1.76204 * 120.19269 * 179.97438 * 20 19 18 22 22 C 1.76202 * 99.99694 * 6.88400 * 21 20 19 23 23 H 1.07998 * 120.00125 * 5.65292 * 22 21 20 24 24 C 1.38802 * 119.99933 * 185.66292 * 22 21 20 25 25 N 1.31556 * 120.00301 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00198 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46752 * 89.99632 * 26 24 22 28 28 H 1.48490 * 109.47122 * 209.99672 * 26 24 22 29 29 H 1.48502 * 109.46765 * 329.99906 * 26 24 22 30 30 H 1.09001 * 109.46695 * 59.99631 * 1 2 3 31 31 H 1.08990 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47274 * 300.00450 * 1 2 3 33 33 H 1.09000 * 109.47868 * 304.99726 * 4 2 1 34 34 H 1.09001 * 109.47585 * 65.00309 * 4 2 1 35 35 H 1.08994 * 109.47383 * 300.00411 * 5 4 2 36 36 H 1.09002 * 109.46592 * 60.00405 * 5 4 2 37 37 H 1.08005 * 119.99826 * 359.97438 * 7 6 5 38 38 H 1.08004 * 120.00287 * 180.22756 * 8 7 6 39 39 H 1.08003 * 120.00377 * 179.72251 * 9 8 7 40 40 H 1.07997 * 120.00425 * 179.97438 * 10 9 8 41 41 H 1.08003 * 120.00032 * 179.97438 * 11 10 9 42 42 H 0.96999 * 120.00020 * 264.99893 * 12 2 1 43 43 H 1.08003 * 120.02265 * 0.02562 * 16 15 13 44 44 H 1.07998 * 119.80890 * 180.02562 * 17 16 15 45 45 H 1.08007 * 119.77710 * 180.27598 * 18 17 16 46 46 H 1.08005 * 119.97866 * 180.02562 * 19 18 17 47 47 H 0.96996 * 120.00217 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3242 2.5440 7 6 4.2045 -0.6337 3.7336 8 6 4.6607 -1.2870 4.8632 9 6 4.9894 -2.6282 4.8006 10 6 4.8570 -3.3174 3.6097 11 6 4.3964 -2.6653 2.4812 12 7 2.0183 -0.6907 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1616 -2.4118 15 6 2.6380 -0.7134 -3.5609 16 6 2.9715 -2.0686 -3.5033 17 6 3.4303 -2.7127 -4.6320 18 6 3.5640 -2.0229 -5.8273 19 6 3.2394 -0.6847 -5.9020 20 6 2.7746 -0.0166 -4.7738 21 16 2.3593 1.6933 -4.8647 22 6 2.5216 1.9557 -6.5996 23 1 2.7205 1.1212 -7.2556 24 6 2.3940 3.2349 -7.1229 25 7 2.1514 4.2514 -6.3239 26 14 2.5668 3.5132 -8.9621 27 1 1.2365 3.3841 -9.6093 28 1 3.1070 4.8743 -9.2081 29 1 3.4941 2.5022 -9.5306 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2057 35 1 3.9995 -1.0728 0.4261 36 1 3.8531 0.4370 1.3574 37 1 3.9522 0.4154 3.7813 38 1 4.7645 -0.7484 5.7936 39 1 5.3501 -3.1376 5.6820 40 1 5.1143 -4.3652 3.5606 41 1 4.2933 -3.2037 1.5506 42 1 2.2490 -1.6318 -1.1525 43 1 2.8698 -2.6112 -2.5750 44 1 3.6871 -3.7606 -4.5851 45 1 3.9203 -2.5384 -6.7070 46 1 3.3461 -0.1548 -6.8370 47 1 2.0618 5.1453 -6.6897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021706892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = -16.973340 kcal Electronic energy + Delta-G solvation = -27616.406488 eV Core-core repulsion = 23853.680625 eV Total energy + Delta-G solvation = -3762.725863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09658 -40.12096 -39.06165 -37.32721 -34.76267 -34.34371 -32.81717 -31.76430 -31.69701 -31.04296 -29.34502 -27.83584 -25.45583 -24.63420 -23.43629 -23.38798 -22.21350 -21.65103 -21.42801 -19.91018 -18.71687 -17.59767 -17.50114 -17.14717 -17.00611 -16.14587 -16.12206 -15.85024 -15.79834 -15.54303 -15.28141 -14.85148 -14.70174 -14.50449 -14.37099 -14.23502 -13.93453 -13.63756 -13.62446 -13.31953 -13.22713 -12.99276 -12.94235 -12.81312 -12.53793 -12.43665 -12.18065 -12.04756 -11.94538 -11.64965 -11.52451 -11.45717 -11.39791 -11.19730 -10.40204 -10.09033 -9.88321 -9.75262 -9.73750 -9.49942 -8.45375 -8.44637 -6.23520 0.07020 0.51700 0.55763 0.56964 1.26324 1.35750 1.44568 1.66047 2.07974 2.18821 2.33964 2.88135 2.94058 3.06956 3.25914 3.65146 3.97396 3.98296 4.03417 4.09787 4.20854 4.23872 4.27948 4.29986 4.38811 4.49704 4.61538 4.64385 4.68601 4.72132 4.74256 4.80098 4.87650 4.88089 4.99405 5.10606 5.15769 5.21433 5.26437 5.30534 5.37771 5.38009 5.47348 5.59030 5.65011 5.68074 5.69276 5.69807 5.81406 6.10899 6.17766 6.20146 6.72203 6.96207 7.45318 8.60538 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.002234 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.467987 B =12532.697555 C =13352.887321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.059 0.941 4 C -0.102 4.102 5 C -0.080 4.080 6 C -0.087 4.087 7 C -0.134 4.134 8 C -0.128 4.128 9 C -0.136 4.136 10 C -0.126 4.126 11 C -0.127 4.127 12 N -0.707 5.707 13 C 0.547 3.453 14 O -0.556 6.556 15 C -0.181 4.181 16 C -0.053 4.053 17 C -0.157 4.157 18 C -0.071 4.071 19 C -0.176 4.176 20 C -0.074 4.074 21 S 0.064 5.936 22 C -0.602 4.602 23 H 0.094 0.906 24 C 0.023 3.977 25 N -0.905 5.905 26 Si 0.993 3.007 27 H -0.266 1.266 28 H -0.273 1.273 29 H -0.258 1.258 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.411 0.589 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.148 0.852 46 H 0.117 0.883 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -19.724 19.292 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.152 4.152 8 C -0.146 4.146 9 C -0.154 4.154 10 C -0.144 4.144 11 C -0.145 4.145 12 N -0.361 5.361 13 C 0.335 3.665 14 O -0.436 6.436 15 C -0.194 4.194 16 C -0.073 4.073 17 C -0.180 4.180 18 C -0.092 4.092 19 C -0.201 4.201 20 C -0.192 4.192 21 S 0.323 5.677 22 C -0.748 4.748 23 H 0.111 0.889 24 C -0.182 4.182 25 N -0.540 5.540 26 Si 0.814 3.186 27 H -0.191 1.191 28 H -0.198 1.198 29 H -0.181 1.181 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.249 0.751 43 H 0.179 0.821 44 H 0.183 0.817 45 H 0.166 0.834 46 H 0.135 0.865 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.036 -17.549 20.099 26.855 hybrid contribution 0.430 -0.134 -2.171 2.217 sum 3.467 -17.683 17.928 25.419 Atomic orbital electron populations 1.22132 0.95040 1.02804 1.01729 1.20981 0.94169 0.96751 0.84226 0.92241 1.21757 0.94261 1.01968 0.95955 1.20592 0.95835 1.00047 0.95319 1.19993 0.99038 0.94578 0.95139 1.21283 1.00542 1.00414 0.92967 1.21407 0.99105 0.95337 0.98789 1.21453 1.00421 0.94780 0.98762 1.21450 0.99187 1.00885 0.92877 1.21315 0.99581 0.94087 0.99530 1.45735 1.67856 1.14206 1.08349 1.18470 0.77620 0.86218 0.84153 1.90783 1.51096 1.17444 1.84323 1.19547 1.11574 0.96007 0.92272 1.21447 0.94819 0.90913 1.00144 1.21322 1.03377 1.01490 0.91842 1.21528 0.95713 0.92403 0.99587 1.21440 1.04146 0.96695 0.97856 1.23007 0.99002 1.00724 0.96466 1.84928 1.75806 0.99641 1.07367 1.24251 1.57145 0.97560 0.95888 0.88883 1.26150 0.92925 0.94326 1.04837 1.70131 1.45427 1.00552 1.37924 0.85044 0.79178 0.78199 0.76198 1.19143 1.19780 1.18136 0.95401 0.90732 0.90147 0.89297 0.89301 0.90807 0.92095 0.85795 0.84774 0.84487 0.84322 0.84687 0.75129 0.82075 0.81683 0.83448 0.86544 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.48 71.98 0.68 -2.92 16 2 C 0.14 3.32 2.57 44.99 0.12 3.44 16 3 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 4 C -0.10 -1.56 4.74 30.60 0.14 -1.42 16 5 C -0.08 -1.39 5.23 29.85 0.16 -1.23 16 6 C -0.09 -1.45 5.13 -19.86 -0.10 -1.56 16 7 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 8 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 9 C -0.14 -1.81 10.05 22.27 0.22 -1.58 16 10 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 11 C -0.13 -1.86 9.70 22.27 0.22 -1.65 16 12 N -0.71 -18.04 4.48 -445.80 -2.00 -20.04 16 13 C 0.55 20.93 7.71 86.66 0.67 21.60 16 14 O -0.56 -27.39 13.43 -4.06 -0.05 -27.44 16 15 C -0.18 -6.89 5.89 -19.95 -0.12 -7.01 16 16 C -0.05 -1.40 9.53 22.52 0.21 -1.19 16 17 C -0.16 -3.80 10.02 22.27 0.22 -3.57 16 18 C -0.07 -2.15 10.02 22.29 0.22 -1.93 16 19 C -0.18 -7.38 9.22 22.40 0.21 -7.17 16 20 C -0.07 -3.48 6.15 23.04 0.14 -3.34 16 21 S 0.06 3.73 18.56 -56.49 -1.05 2.68 16 22 C -0.60 -35.59 9.00 67.95 0.61 -34.98 16 23 H 0.09 5.20 4.98 -2.91 -0.01 5.18 16 24 C 0.02 1.34 5.49 84.87 0.47 1.81 16 25 N -0.91 -56.11 13.22 21.64 0.29 -55.82 16 26 Si 0.99 44.47 29.55 68.60 2.03 46.49 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.29 7.69 -2.39 -0.02 1.28 16 36 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.12 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.41 7.23 6.63 -92.71 -0.61 6.62 16 43 H 0.16 2.57 6.40 -2.91 -0.02 2.55 16 44 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.12 5.31 5.04 -2.91 -0.01 5.30 16 47 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.59 402.15 4.32 -76.27 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.37 Total: 25.65 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 4.74 Total: -47.79 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.71 Total: -75.86 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.05 Total: 2.68 kcal Total: -80.59 4.32 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.299 kcal (2) G-P(sol) polarization free energy of solvation -80.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds