Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47097 * 2 1 4 4 C 1.53006 * 109.46709 * 239.99946 * 2 1 3 5 5 C 1.53003 * 109.46735 * 175.00038 * 4 2 1 6 6 C 1.50699 * 109.46885 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00184 * 269.72895 * 6 5 4 8 8 C 1.38234 * 119.99784 * 179.76923 * 7 6 5 9 9 C 1.38231 * 120.00229 * 0.50572 * 8 7 6 10 10 C 1.38239 * 119.99903 * 359.74569 * 9 8 7 11 11 C 1.38235 * 119.99585 * 90.00398 * 6 5 4 12 12 N 1.46494 * 109.47012 * 119.99964 * 2 1 3 13 13 C 1.34774 * 119.99973 * 274.99992 * 12 2 1 14 14 O 1.21609 * 120.00320 * 359.97438 * 13 12 2 15 15 C 1.47429 * 119.99840 * 180.02562 * 13 12 2 16 16 C 1.39682 * 120.21882 * 359.97438 * 15 13 12 17 17 C 1.37801 * 119.94016 * 179.97438 * 16 15 13 18 18 C 1.38654 * 120.38549 * 0.02562 * 17 16 15 19 19 C 1.37919 * 120.43362 * 359.97438 * 18 17 16 20 20 C 1.39101 * 120.05207 * 359.97438 * 19 18 17 21 21 S 1.76206 * 120.18871 * 180.02562 * 20 19 18 22 22 C 1.76200 * 99.99847 * 6.83369 * 21 20 19 23 23 H 1.07998 * 120.00274 * 5.66026 * 22 21 20 24 24 C 1.38805 * 119.99573 * 185.65392 * 22 21 20 25 25 N 1.31555 * 120.00478 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99806 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46989 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47010 * 120.00235 * 26 24 22 29 29 H 1.48497 * 109.47529 * 240.00149 * 26 24 22 30 30 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46589 * 300.00481 * 1 2 3 32 32 H 1.09006 * 109.46888 * 59.99824 * 1 2 3 33 33 H 1.08993 * 109.46883 * 294.99800 * 4 2 1 34 34 H 1.08994 * 109.46916 * 55.00315 * 4 2 1 35 35 H 1.09003 * 109.47188 * 300.00102 * 5 4 2 36 36 H 1.09004 * 109.46738 * 60.00181 * 5 4 2 37 37 H 1.08003 * 119.99784 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.00052 * 180.22852 * 8 7 6 39 39 H 1.07998 * 120.00506 * 179.73181 * 9 8 7 40 40 H 1.08000 * 119.99792 * 179.97438 * 10 9 8 41 41 H 1.07999 * 120.00514 * 359.97438 * 11 6 5 42 42 H 0.97000 * 120.00176 * 94.99990 * 12 2 1 43 43 H 1.07998 * 120.02576 * 0.04797 * 16 15 13 44 44 H 1.08008 * 119.80460 * 180.02562 * 17 16 15 45 45 H 1.08001 * 119.78248 * 180.27544 * 18 17 16 46 46 H 1.08005 * 119.96990 * 180.02562 * 19 18 17 47 47 H 0.96995 * 120.00304 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0672 -1.3243 -2.5439 7 6 4.4012 -2.6641 -2.4799 8 6 4.8575 -3.3174 -3.6095 9 6 4.9896 -2.6283 -4.8005 10 6 4.6604 -1.2871 -4.8632 11 6 4.1992 -0.6351 -3.7349 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1618 2.4116 15 6 2.6390 -0.7131 3.5607 16 6 2.9725 -2.0683 3.5031 17 6 3.4323 -2.7120 4.6315 18 6 3.5661 -2.0223 5.8269 19 6 3.2413 -0.6840 5.9014 20 6 2.7765 -0.0161 4.7733 21 16 2.3612 1.6939 4.8643 22 6 2.9128 2.0562 6.4980 23 1 3.4393 1.3058 7.0691 24 6 2.6708 3.3061 7.0510 25 7 2.0292 4.2201 6.3556 26 14 3.2550 3.6900 8.7833 27 1 3.9449 2.5023 9.3476 28 1 4.1969 4.8374 8.7451 29 1 2.0880 4.0358 9.6341 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 4.3026 -3.2013 -1.5481 38 1 5.1150 -4.3651 -3.5604 39 1 5.3501 -3.1376 -5.6820 40 1 4.7640 -0.7487 -5.7937 41 1 3.9421 0.4126 -3.7840 42 1 2.2491 -1.6317 1.1526 43 1 2.8712 -2.6108 2.5748 44 1 3.6899 -3.7598 4.5844 45 1 3.9316 -2.5353 6.7042 46 1 3.3488 -0.1540 6.8363 47 1 1.8597 5.0934 6.7421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021706894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 0.069079 kcal Electronic energy + Delta-G solvation = -27621.482058 eV Core-core repulsion = 23859.495210 eV Total energy + Delta-G solvation = -3761.986848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.81130 -39.35049 -37.66558 -36.15126 -33.39044 -32.74827 -31.58961 -31.10574 -30.26671 -29.79126 -28.55366 -25.82061 -24.47849 -23.40177 -22.79005 -21.99562 -21.22513 -20.79089 -20.06032 -18.17555 -17.15869 -16.97898 -16.20973 -15.76722 -15.43425 -15.30171 -15.14179 -14.56403 -14.43547 -14.19401 -13.80015 -13.70161 -13.65700 -13.54206 -13.27372 -13.00134 -12.88979 -12.84783 -12.50936 -11.99976 -11.89793 -11.64606 -11.58082 -11.47219 -11.24241 -11.21416 -11.11679 -10.95586 -10.89630 -10.68147 -10.31661 -9.78705 -9.61871 -9.49593 -9.14569 -8.94232 -8.74040 -8.69402 -8.32139 -8.04357 -6.52531 -6.45785 -4.16033 1.13821 1.17640 1.54816 2.02549 3.10892 3.12170 3.20573 3.42734 3.54139 3.55528 3.56384 4.06931 4.44625 4.50089 4.61734 4.75925 4.87878 4.93662 4.95301 4.99350 5.04078 5.14068 5.28947 5.31716 5.33735 5.40184 5.47423 5.55176 5.60305 5.61081 5.68943 5.79077 5.83150 5.87359 5.91715 6.04837 6.12114 6.20791 6.24790 6.28739 6.34633 6.39878 6.45474 6.60536 6.79236 6.83056 6.88200 7.04437 7.14272 7.45492 7.59884 7.95167 8.17079 8.83578 9.00685 10.57480 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002247 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.848828 B =12456.216715 C =13186.135095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.117 4.117 5 C -0.085 4.085 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.119 4.119 11 C -0.118 4.118 12 N -0.733 5.733 13 C 0.553 3.447 14 O -0.509 6.509 15 C -0.177 4.177 16 C -0.061 4.061 17 C -0.187 4.187 18 C -0.077 4.077 19 C -0.153 4.153 20 C -0.057 4.057 21 S 0.184 5.816 22 C -0.595 4.595 23 H 0.091 0.909 24 C 0.083 3.917 25 N -0.858 5.858 26 Si 0.919 3.081 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.393 0.607 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.139 0.861 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -14.467 -18.077 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.122 4.122 6 C -0.076 4.076 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.388 5.388 13 C 0.342 3.658 14 O -0.386 6.386 15 C -0.192 4.192 16 C -0.081 4.081 17 C -0.212 4.212 18 C -0.099 4.099 19 C -0.179 4.179 20 C -0.177 4.177 21 S 0.449 5.551 22 C -0.742 4.742 23 H 0.109 0.891 24 C -0.128 4.128 25 N -0.491 5.491 26 Si 0.744 3.256 27 H -0.192 1.192 28 H -0.202 1.202 29 H -0.202 1.202 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.227 0.773 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.156 0.844 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.656 -12.217 -18.767 22.455 hybrid contribution 1.082 -1.250 1.944 2.552 sum 2.739 -13.467 -16.823 21.723 Atomic orbital electron populations 1.22181 0.95548 1.01805 1.02631 1.20875 0.93820 0.97746 0.83620 0.89259 1.21865 0.94677 1.01261 0.97712 1.20671 0.95574 1.00852 0.95095 1.19988 0.98115 0.94110 0.95357 1.21095 0.99620 0.94272 0.98603 1.21147 0.99683 0.99837 0.93050 1.21129 1.00945 0.94769 0.97928 1.21149 0.99354 0.94856 0.98384 1.21104 0.99991 1.00015 0.92533 1.45939 1.69679 1.13588 1.09559 1.18300 0.78010 0.86623 0.82848 1.90780 1.48890 1.15108 1.83809 1.19140 1.12765 0.94343 0.92977 1.20882 0.96826 0.92945 0.97489 1.20627 1.07676 0.99323 0.93556 1.21082 0.97434 0.94318 0.97115 1.21439 1.02874 0.94552 0.98988 1.23096 0.97422 1.03135 0.94034 1.84757 1.63805 0.93040 1.13516 1.24101 1.43141 1.02603 1.04343 0.89123 1.25099 0.93696 0.95005 0.98995 1.69982 1.36648 1.05112 1.37318 0.86105 0.78729 0.78785 0.81954 1.19159 1.20239 1.20245 0.92811 0.91565 0.92084 0.91404 0.90459 0.90599 0.90472 0.86045 0.86233 0.86381 0.86254 0.86047 0.77267 0.87257 0.87146 0.87071 0.84409 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.14 1.71 2.58 -67.93 -0.17 1.54 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 C -0.12 -1.04 4.74 -26.73 -0.13 -1.16 16 5 C -0.08 -0.79 5.23 -27.88 -0.15 -0.94 16 6 C -0.08 -0.70 5.13 -104.63 -0.54 -1.24 16 7 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 8 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 9 C -0.13 -1.03 10.05 -39.58 -0.40 -1.42 16 10 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 11 C -0.12 -1.05 9.70 -39.58 -0.38 -1.44 16 12 N -0.73 -9.87 4.48 -54.88 -0.25 -10.12 16 13 C 0.55 10.38 7.71 -12.52 -0.10 10.28 16 14 O -0.51 -11.60 13.43 5.27 0.07 -11.53 16 15 C -0.18 -3.44 5.89 -104.75 -0.62 -4.05 16 16 C -0.06 -0.95 9.53 -39.20 -0.37 -1.32 16 17 C -0.19 -2.85 10.02 -39.59 -0.40 -3.25 16 18 C -0.08 -1.32 10.03 -39.54 -0.40 -1.71 16 19 C -0.15 -3.20 9.22 -39.38 -0.36 -3.56 16 20 C -0.06 -1.29 6.15 -38.39 -0.24 -1.53 16 21 S 0.18 4.92 18.56 -107.50 -2.00 2.93 16 22 C -0.60 -16.41 9.00 30.94 0.28 -16.13 16 23 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 24 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 25 N -0.86 -24.73 13.22 55.49 0.73 -24.00 16 26 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.39 4.23 6.63 -40.82 -0.27 3.96 16 43 H 0.11 1.26 6.40 -52.49 -0.34 0.93 16 44 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.14 3.01 5.03 -52.48 -0.26 2.74 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -32.09 402.14 -11.84 -43.94 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.55 Total: 6.49 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -4.89 Total: -29.46 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.49 Total: -34.11 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.00 Total: 2.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.09 -11.84 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds