Wall clock time and date at job start Tue Mar 31 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47097 * 2 1 4 4 C 1.53006 * 109.46709 * 239.99946 * 2 1 3 5 5 C 1.53003 * 109.46735 * 175.00038 * 4 2 1 6 6 C 1.50699 * 109.46885 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00184 * 269.72895 * 6 5 4 8 8 C 1.38234 * 119.99784 * 179.76923 * 7 6 5 9 9 C 1.38231 * 120.00229 * 0.50572 * 8 7 6 10 10 C 1.38239 * 119.99903 * 359.74569 * 9 8 7 11 11 C 1.38235 * 119.99585 * 90.00398 * 6 5 4 12 12 N 1.46494 * 109.47012 * 119.99964 * 2 1 3 13 13 C 1.34774 * 119.99973 * 274.99992 * 12 2 1 14 14 O 1.21609 * 120.00320 * 359.97438 * 13 12 2 15 15 C 1.47429 * 119.99840 * 180.02562 * 13 12 2 16 16 C 1.39682 * 120.21882 * 359.97438 * 15 13 12 17 17 C 1.37801 * 119.94016 * 179.97438 * 16 15 13 18 18 C 1.38654 * 120.38549 * 0.02562 * 17 16 15 19 19 C 1.37919 * 120.43362 * 359.97438 * 18 17 16 20 20 C 1.39101 * 120.05207 * 359.97438 * 19 18 17 21 21 S 1.76206 * 120.18871 * 180.02562 * 20 19 18 22 22 C 1.76200 * 99.99847 * 6.83369 * 21 20 19 23 23 H 1.07998 * 120.00274 * 5.66026 * 22 21 20 24 24 C 1.38805 * 119.99573 * 185.65392 * 22 21 20 25 25 N 1.31555 * 120.00478 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99806 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46989 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47010 * 120.00235 * 26 24 22 29 29 H 1.48497 * 109.47529 * 240.00149 * 26 24 22 30 30 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46589 * 300.00481 * 1 2 3 32 32 H 1.09006 * 109.46888 * 59.99824 * 1 2 3 33 33 H 1.08993 * 109.46883 * 294.99800 * 4 2 1 34 34 H 1.08994 * 109.46916 * 55.00315 * 4 2 1 35 35 H 1.09003 * 109.47188 * 300.00102 * 5 4 2 36 36 H 1.09004 * 109.46738 * 60.00181 * 5 4 2 37 37 H 1.08003 * 119.99784 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.00052 * 180.22852 * 8 7 6 39 39 H 1.07998 * 120.00506 * 179.73181 * 9 8 7 40 40 H 1.08000 * 119.99792 * 179.97438 * 10 9 8 41 41 H 1.07999 * 120.00514 * 359.97438 * 11 6 5 42 42 H 0.97000 * 120.00176 * 94.99990 * 12 2 1 43 43 H 1.07998 * 120.02576 * 0.04797 * 16 15 13 44 44 H 1.08008 * 119.80460 * 180.02562 * 17 16 15 45 45 H 1.08001 * 119.78248 * 180.27544 * 18 17 16 46 46 H 1.08005 * 119.96990 * 180.02562 * 19 18 17 47 47 H 0.96995 * 120.00304 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0672 -1.3243 -2.5439 7 6 4.4012 -2.6641 -2.4799 8 6 4.8575 -3.3174 -3.6095 9 6 4.9896 -2.6283 -4.8005 10 6 4.6604 -1.2871 -4.8632 11 6 4.1992 -0.6351 -3.7349 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1618 2.4116 15 6 2.6390 -0.7131 3.5607 16 6 2.9725 -2.0683 3.5031 17 6 3.4323 -2.7120 4.6315 18 6 3.5661 -2.0223 5.8269 19 6 3.2413 -0.6840 5.9014 20 6 2.7765 -0.0161 4.7733 21 16 2.3612 1.6939 4.8643 22 6 2.9128 2.0562 6.4980 23 1 3.4393 1.3058 7.0691 24 6 2.6708 3.3061 7.0510 25 7 2.0292 4.2201 6.3556 26 14 3.2550 3.6900 8.7833 27 1 3.9449 2.5023 9.3476 28 1 4.1969 4.8374 8.7451 29 1 2.0880 4.0358 9.6341 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 4.3026 -3.2013 -1.5481 38 1 5.1150 -4.3651 -3.5604 39 1 5.3501 -3.1376 -5.6820 40 1 4.7640 -0.7487 -5.7937 41 1 3.9421 0.4126 -3.7840 42 1 2.2491 -1.6317 1.1526 43 1 2.8712 -2.6108 2.5748 44 1 3.6899 -3.7598 4.5844 45 1 3.9316 -2.5353 6.7042 46 1 3.3488 -0.1540 6.8363 47 1 1.8597 5.0934 6.7421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021706894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:10 Heat of formation + Delta-G solvation = -17.010254 kcal Electronic energy + Delta-G solvation = -27622.222674 eV Core-core repulsion = 23859.495210 eV Total energy + Delta-G solvation = -3762.727464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09700 -40.12146 -39.06240 -37.32720 -34.76390 -34.34461 -32.81726 -31.76538 -31.69695 -31.04325 -29.34530 -27.83856 -25.45610 -24.63473 -23.43624 -23.38864 -22.21391 -21.65117 -21.42869 -19.91207 -18.71747 -17.59746 -17.50183 -17.15040 -17.00703 -16.14871 -16.12383 -15.84806 -15.79813 -15.54457 -15.28327 -14.84710 -14.70360 -14.50166 -14.37337 -14.23583 -13.93356 -13.64687 -13.63259 -13.30747 -13.22838 -13.00827 -12.94423 -12.80443 -12.53163 -12.43676 -12.18012 -12.04340 -11.94420 -11.65092 -11.52455 -11.44930 -11.40692 -11.20376 -10.40105 -10.09441 -9.87101 -9.75240 -9.74459 -9.50077 -8.45508 -8.44739 -6.23635 0.06952 0.51673 0.55738 0.56905 1.26485 1.34540 1.45166 1.66315 2.07943 2.18566 2.33910 2.87964 2.94017 3.06955 3.25816 3.65099 3.97376 3.98258 4.03403 4.09789 4.20800 4.23873 4.27915 4.29946 4.38779 4.49718 4.61520 4.64349 4.68555 4.72110 4.74229 4.80065 4.87607 4.88084 4.99390 5.10581 5.15741 5.21411 5.26401 5.30451 5.37761 5.38085 5.47364 5.59008 5.64971 5.68059 5.69249 5.69765 5.81375 6.11025 6.17802 6.20109 6.72177 6.96143 7.45293 8.60526 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002247 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.848828 B =12456.216715 C =13186.135095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.059 0.941 4 C -0.102 4.102 5 C -0.081 4.081 6 C -0.087 4.087 7 C -0.127 4.127 8 C -0.126 4.126 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.134 4.134 12 N -0.707 5.707 13 C 0.547 3.453 14 O -0.556 6.556 15 C -0.181 4.181 16 C -0.053 4.053 17 C -0.157 4.157 18 C -0.071 4.071 19 C -0.176 4.176 20 C -0.074 4.074 21 S 0.063 5.937 22 C -0.601 4.601 23 H 0.094 0.906 24 C 0.023 3.977 25 N -0.905 5.905 26 Si 0.993 3.007 27 H -0.257 1.257 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.411 0.589 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.148 0.852 46 H 0.117 0.883 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -19.703 -19.333 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.152 4.152 12 N -0.361 5.361 13 C 0.335 3.665 14 O -0.436 6.436 15 C -0.194 4.194 16 C -0.073 4.073 17 C -0.180 4.180 18 C -0.092 4.092 19 C -0.201 4.201 20 C -0.192 4.192 21 S 0.322 5.678 22 C -0.748 4.748 23 H 0.111 0.889 24 C -0.183 4.183 25 N -0.540 5.540 26 Si 0.814 3.186 27 H -0.181 1.181 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.249 0.751 43 H 0.179 0.821 44 H 0.183 0.817 45 H 0.165 0.835 46 H 0.134 0.866 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.908 -17.595 -20.077 26.854 hybrid contribution 0.766 -0.039 2.084 2.221 sum 3.674 -17.634 -17.993 25.459 Atomic orbital electron populations 1.22134 0.95026 1.02810 1.01727 1.20984 0.94178 0.96753 0.84225 0.92245 1.21757 0.94252 1.01968 0.95960 1.20591 0.95844 1.00044 0.95318 1.19990 0.99035 0.94597 0.95126 1.21315 0.99593 0.94087 0.99520 1.21449 0.99204 1.00878 0.92864 1.21453 1.00426 0.94770 0.98767 1.21411 0.99082 0.95345 0.98805 1.21283 1.00526 1.00427 0.92969 1.45732 1.67845 1.14179 1.08387 1.18471 0.77673 0.86183 0.84129 1.90783 1.50916 1.17397 1.84550 1.19549 1.11703 0.96124 0.92016 1.21445 0.94806 0.90922 1.00148 1.21322 1.03347 1.01506 0.91851 1.21530 0.95689 0.92418 0.99594 1.21440 1.04421 0.96542 0.97732 1.23003 0.99312 1.00567 0.96307 1.84931 1.68951 0.98746 1.15159 1.24283 1.43251 1.03053 1.04177 0.88880 1.26151 0.93916 0.94718 1.03472 1.70136 1.38886 1.05627 1.39401 0.84993 0.78379 0.78786 0.76398 1.18081 1.19599 1.19473 0.90719 0.95403 0.90145 0.89297 0.89293 0.92101 0.90816 0.84690 0.84320 0.84485 0.84772 0.85793 0.75127 0.82071 0.81680 0.83453 0.86554 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.48 71.98 0.68 -2.91 16 2 C 0.14 3.32 2.58 45.00 0.12 3.44 16 3 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 4 C -0.10 -1.56 4.74 30.60 0.14 -1.42 16 5 C -0.08 -1.39 5.23 29.85 0.16 -1.24 16 6 C -0.09 -1.46 5.13 -19.87 -0.10 -1.56 16 7 C -0.13 -1.87 9.70 22.27 0.22 -1.65 16 8 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 9 C -0.14 -1.81 10.05 22.27 0.22 -1.59 16 10 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 11 C -0.13 -2.21 9.70 22.27 0.22 -2.00 16 12 N -0.71 -18.04 4.48 -445.79 -2.00 -20.03 16 13 C 0.55 20.93 7.71 86.66 0.67 21.60 16 14 O -0.56 -27.39 13.43 -4.06 -0.05 -27.44 16 15 C -0.18 -6.89 5.89 -19.95 -0.12 -7.01 16 16 C -0.05 -1.40 9.53 22.52 0.21 -1.18 16 17 C -0.16 -3.80 10.02 22.27 0.22 -3.57 16 18 C -0.07 -2.15 10.03 22.29 0.22 -1.93 16 19 C -0.18 -7.38 9.22 22.40 0.21 -7.18 16 20 C -0.07 -3.48 6.15 23.04 0.14 -3.34 16 21 S 0.06 3.70 18.56 -56.49 -1.05 2.66 16 22 C -0.60 -35.55 9.00 67.96 0.61 -34.93 16 23 H 0.09 5.21 4.98 -2.91 -0.01 5.20 16 24 C 0.02 1.33 5.49 84.87 0.47 1.80 16 25 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 26 Si 0.99 44.51 29.55 68.60 2.03 46.53 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 36 H 0.07 1.30 7.69 -2.38 -0.02 1.28 16 37 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.41 7.23 6.63 -92.71 -0.61 6.61 16 43 H 0.16 2.56 6.40 -2.91 -0.02 2.55 16 44 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.12 5.32 5.03 -2.91 -0.01 5.30 16 47 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -80.64 402.14 4.32 -76.31 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.37 Total: 25.56 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 4.74 Total: -47.77 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.71 Total: -75.85 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.05 Total: 2.66 kcal Total: -80.64 4.32 -76.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021706894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.303 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds