Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46844 * 2 1 4 4 C 1.52999 * 109.46875 * 240.00715 * 2 1 3 5 5 C 1.53005 * 109.47251 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47134 * 59.99324 * 5 4 2 7 7 C 1.52999 * 109.47319 * 300.00201 * 6 5 4 8 8 C 1.52997 * 109.47176 * 60.00294 * 7 6 5 9 9 H 1.09000 * 109.47644 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.47451 * 59.99679 * 8 7 6 11 11 C 1.34777 * 119.99907 * 85.00106 * 10 8 7 12 12 O 1.21653 * 119.99922 * 0.02562 * 11 10 8 13 13 C 1.47105 * 120.00078 * 180.02562 * 11 10 8 14 14 C 1.43199 * 120.00028 * 359.97438 * 13 11 10 15 15 N 5.44395 * 77.17883 * 177.88134 * 2 1 3 16 16 C 1.37882 * 120.00072 * 179.72792 * 13 11 10 17 17 C 1.46306 * 120.00444 * 187.06881 * 16 13 11 18 18 C 1.40206 * 120.24879 * 39.51846 * 17 16 13 19 19 C 1.37644 * 119.86904 * 179.72303 * 18 17 16 20 20 C 1.38716 * 120.38540 * 0.59264 * 19 18 17 21 21 C 1.38033 * 120.51521 * 359.68627 * 20 19 18 22 22 C 1.38785 * 120.11899 * 0.02562 * 21 20 19 23 23 O 1.35437 * 120.19281 * 180.02562 * 22 21 20 24 24 C 1.34744 * 117.00446 * 4.89131 * 23 22 21 25 25 H 1.08001 * 119.99411 * 354.87854 * 24 23 22 26 26 C 1.38768 * 120.00411 * 174.88007 * 24 23 22 27 27 N 1.31473 * 120.00255 * 180.02562 * 26 24 23 28 28 Si 1.86799 * 119.99690 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.47211 * 90.00505 * 28 26 24 30 30 H 1.48504 * 109.47372 * 210.00114 * 28 26 24 31 31 H 1.48500 * 109.47428 * 330.00285 * 28 26 24 32 32 H 1.09009 * 109.47097 * 299.99832 * 1 2 3 33 33 H 1.09003 * 109.47777 * 59.99447 * 1 2 3 34 34 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46801 * 299.99311 * 4 2 1 36 36 H 1.08990 * 109.47430 * 59.99421 * 4 2 1 37 37 H 1.08996 * 109.47164 * 179.97438 * 5 4 2 38 38 H 1.09004 * 109.46512 * 299.99849 * 5 4 2 39 39 H 1.08999 * 109.47347 * 60.00499 * 6 5 4 40 40 H 1.09000 * 109.47238 * 180.02562 * 6 5 4 41 41 H 1.09004 * 109.47592 * 300.00251 * 7 6 5 42 42 H 1.09003 * 109.47477 * 180.02562 * 7 6 5 43 43 H 0.96995 * 120.00356 * 265.00929 * 10 8 7 44 44 H 1.08002 * 120.00375 * 7.06028 * 16 13 11 45 45 H 1.07997 * 120.06957 * 0.03542 * 18 17 16 46 46 H 1.07998 * 119.80300 * 180.27691 * 19 18 17 47 47 H 1.07996 * 119.73782 * 179.71796 * 20 19 18 48 48 H 1.08008 * 119.94087 * 180.02562 * 21 20 19 49 49 H 0.96999 * 119.99925 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7217 -1.2491 6 6 4.0794 -1.4433 0.0001 7 6 3.5695 -0.7221 1.2493 8 6 2.0396 -0.7216 1.2492 9 1 1.6762 -0.2075 2.1389 10 7 1.5507 -2.1027 1.2488 11 6 1.4216 -2.7721 2.4114 12 8 1.7105 -2.2294 3.4611 13 6 0.9312 -4.1590 2.4110 14 6 0.5906 -4.7977 1.1754 15 7 0.3219 -5.3046 0.1962 16 6 0.8044 -4.8458 3.5999 17 6 0.4663 -6.2692 3.5901 18 6 1.0272 -7.1218 2.6287 19 6 0.7081 -8.4607 2.6302 20 6 -0.1754 -8.9704 3.5704 21 6 -0.7413 -8.1444 4.5205 22 6 -0.4298 -6.7921 4.5421 23 8 -0.9838 -5.9803 5.4740 24 6 -1.7510 -6.5639 6.4155 25 1 -1.9683 -7.6202 6.3564 26 6 -2.2621 -5.8079 7.4609 27 7 -3.0103 -6.3775 8.3798 28 14 -1.8857 -3.9811 7.5634 29 1 -2.9288 -3.2189 6.8309 30 1 -1.8712 -3.5577 8.9867 31 1 -0.5581 -3.7142 6.9540 32 1 -0.3634 0.5138 0.8901 33 1 -0.3635 0.5139 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.6766 -1.7488 -1.2493 36 1 1.6765 -0.2073 -2.1392 37 1 3.9332 -1.2358 -2.1389 38 1 3.9336 0.3059 -1.2488 39 1 3.7158 -2.4709 -0.0002 40 1 5.1694 -1.4434 0.0005 41 1 3.9332 0.3054 1.2497 42 1 3.9329 -1.2360 2.1393 43 1 1.3201 -2.5353 0.4119 44 1 0.9548 -4.3330 4.5385 45 1 1.7121 -6.7297 1.8915 46 1 1.1442 -9.1173 1.8919 47 1 -0.4219 -10.0218 3.5592 48 1 -1.4277 -8.5511 5.2485 49 1 -3.3677 -5.8489 9.1103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022344848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -12.673667 kcal Electronic energy + Delta-G solvation = -31172.880806 eV Core-core repulsion = 27065.307182 eV Total energy + Delta-G solvation = -4107.573624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.50852 -39.61000 -38.38682 -37.14169 -36.26854 -33.80723 -33.52838 -32.76060 -32.66748 -30.52918 -29.61395 -29.17230 -26.55148 -25.56356 -24.54359 -22.88041 -21.91663 -21.64279 -21.14761 -21.08962 -19.22702 -18.67357 -18.17645 -17.25835 -16.15665 -15.77299 -15.43881 -15.25093 -15.11968 -14.68171 -14.60199 -14.33462 -14.20566 -14.09515 -14.04431 -13.80627 -13.60139 -13.16348 -13.09918 -12.93013 -12.69944 -12.58240 -12.40287 -12.38368 -12.20387 -12.08428 -11.93069 -11.77202 -11.67721 -11.16957 -11.08834 -10.99058 -10.93789 -10.81023 -10.57354 -10.35708 -10.23988 -9.93524 -9.72083 -9.54512 -9.10302 -9.05435 -8.23316 -7.55930 -6.67886 -4.32858 0.62848 2.00801 2.08415 2.84583 2.86441 3.13264 3.17026 3.19828 3.31217 3.79030 4.05772 4.20902 4.23706 4.34112 4.43779 4.44522 4.49190 4.79452 4.84864 4.86454 4.92327 5.13544 5.17095 5.19904 5.29116 5.33815 5.35329 5.41058 5.49859 5.53645 5.59206 5.69155 5.71792 5.77400 5.82900 5.84056 5.92234 5.95814 6.04102 6.08590 6.09395 6.15710 6.20903 6.25523 6.43764 6.49810 6.82307 6.88370 7.01454 7.30459 7.48968 7.51148 7.70387 7.74220 8.28625 8.64098 9.20412 10.37374 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003073 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.686507 B = 9110.112899 C =10772.037294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.131 4.131 8 C 0.152 3.848 9 H 0.092 0.908 10 N -0.722 5.722 11 C 0.582 3.418 12 O -0.536 6.536 13 C -0.196 4.196 14 C 0.266 3.734 15 N -0.436 5.436 16 C 0.130 3.870 17 C -0.201 4.201 18 C -0.036 4.036 19 C -0.210 4.210 20 C -0.048 4.048 21 C -0.221 4.221 22 C 0.190 3.810 23 O -0.191 6.191 24 C -0.393 4.393 25 H 0.112 0.888 26 C 0.071 3.929 27 N -0.861 5.861 28 Si 0.900 3.100 29 H -0.269 1.269 30 H -0.278 1.278 31 H -0.251 1.251 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.397 0.603 44 H 0.155 0.845 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.141 0.859 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 9.485 -15.177 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.170 4.170 8 C 0.047 3.953 9 H 0.110 0.890 10 N -0.375 5.375 11 C 0.370 3.630 12 O -0.414 6.414 13 C -0.204 4.204 14 C -0.047 4.047 15 N -0.114 5.114 16 C 0.106 3.894 17 C -0.202 4.202 18 C -0.054 4.054 19 C -0.228 4.228 20 C -0.067 4.067 21 C -0.240 4.240 22 C 0.134 3.866 23 O -0.093 6.093 24 C -0.468 4.468 25 H 0.130 0.870 26 C -0.136 4.136 27 N -0.495 5.495 28 Si 0.724 3.276 29 H -0.194 1.194 30 H -0.203 1.203 31 H -0.175 1.175 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.232 0.768 44 H 0.173 0.827 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.158 0.842 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.428 9.426 -15.653 21.038 hybrid contribution -0.118 0.426 0.189 0.481 sum 10.310 9.852 -15.465 21.036 Atomic orbital electron populations 1.21841 0.94585 1.02354 1.01910 1.21425 0.96189 0.99889 0.94229 0.89713 1.21616 0.95792 1.00578 0.97500 1.21548 0.95355 1.00796 0.97985 1.21507 1.00169 0.99763 0.94283 1.21932 0.95209 1.01156 0.98656 1.20955 0.93567 0.81985 0.98769 0.89044 1.45945 1.68054 1.14602 1.08879 1.17549 0.77074 0.84609 0.83722 1.90822 1.51025 1.68612 1.30973 1.17935 1.19711 0.94818 0.87919 1.25450 0.93284 0.93307 0.92703 1.81164 1.10595 1.08026 1.11596 1.23062 0.77841 0.91607 0.96885 1.18002 1.07329 0.92820 1.02083 1.20969 0.96909 0.93409 0.94107 1.20599 1.04405 0.95234 1.02602 1.21054 0.93747 0.98923 0.92936 1.21276 1.06244 0.93245 1.03238 1.19128 0.90224 0.89265 0.87964 1.83443 1.55869 1.35424 1.34549 1.20880 1.26806 0.97084 1.02000 0.87036 1.24538 0.94779 1.00643 0.93602 1.69590 1.30388 1.37742 1.11800 0.86245 0.80972 0.82358 0.77998 1.19426 1.20334 1.17473 0.92255 0.92539 0.92462 0.92214 0.91595 0.92062 0.91894 0.91913 0.92037 0.91140 0.90988 0.76753 0.82729 0.86628 0.86826 0.86576 0.84192 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.03 37.16 0.34 -0.94 16 2 C -0.10 -0.78 2.51 -90.62 -0.23 -1.01 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -0.88 5.03 -26.73 -0.13 -1.01 16 5 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 6 C -0.12 -1.01 5.76 -26.73 -0.15 -1.16 16 7 C -0.13 -1.22 5.60 -26.73 -0.15 -1.37 16 8 C 0.15 1.53 2.23 -67.93 -0.15 1.38 16 9 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 10 N -0.72 -8.49 3.49 -54.98 -0.19 -8.68 16 11 C 0.58 8.68 7.71 -12.66 -0.10 8.58 16 12 O -0.54 -9.46 15.97 5.23 0.08 -9.38 16 13 C -0.20 -3.05 5.81 -104.51 -0.61 -3.66 16 14 C 0.27 4.12 10.80 -22.51 -0.24 3.88 16 15 N -0.44 -7.14 18.48 41.79 0.77 -6.37 16 16 C 0.13 2.23 8.97 -36.47 -0.33 1.90 16 17 C -0.20 -3.70 5.42 -104.94 -0.57 -4.26 16 18 C -0.04 -0.59 8.32 -39.06 -0.33 -0.92 16 19 C -0.21 -3.33 10.02 -39.62 -0.40 -3.73 16 20 C -0.05 -0.79 10.03 -39.48 -0.40 -1.19 16 21 C -0.22 -4.32 9.16 -39.45 -0.36 -4.68 16 22 C 0.19 3.99 6.67 -38.41 -0.26 3.74 16 23 O -0.19 -4.55 8.04 1.25 0.01 -4.54 16 24 C -0.39 -10.12 9.95 30.93 0.31 -9.81 16 25 H 0.11 2.91 5.43 -52.49 -0.29 2.63 16 26 C 0.07 1.85 5.50 -17.51 -0.10 1.75 16 27 N -0.86 -23.15 13.96 55.49 0.77 -22.38 16 28 Si 0.90 20.33 28.62 -169.99 -4.86 15.46 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 31 H -0.25 -5.66 7.11 56.52 0.40 -5.26 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.55 7.44 -51.93 -0.39 0.17 16 35 H 0.06 0.50 6.50 -51.93 -0.34 0.16 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.40 4.37 5.53 -40.82 -0.23 4.14 16 44 H 0.16 2.73 7.61 -52.49 -0.40 2.33 16 45 H 0.12 1.76 6.58 -52.49 -0.35 1.42 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 47 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.14 2.82 5.63 -52.48 -0.30 2.53 16 49 H 0.29 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -27.61 401.94 -8.22 -35.82 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.85 Total: 7.51 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -4.01 Total: -13.51 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 1.36 Total: -37.43 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.86 Total: 15.46 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.61 -8.22 -35.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022344848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.149 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds