Wall clock time and date at job start Tue Mar 31 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.52997 * 109.46841 * 119.99783 * 2 1 3 5 5 C 1.52996 * 109.47001 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47566 * 300.00209 * 5 4 2 7 7 C 1.53003 * 109.46864 * 59.99731 * 6 5 4 8 8 C 1.52994 * 109.47151 * 240.00010 * 2 1 3 9 9 H 1.09001 * 109.47036 * 300.00119 * 8 2 1 10 10 N 1.46506 * 109.47148 * 59.99661 * 8 2 1 11 11 C 1.34768 * 120.00128 * 204.99735 * 10 8 2 12 12 O 1.21655 * 120.00296 * 0.02562 * 11 10 8 13 13 C 1.47107 * 119.99968 * 180.02562 * 11 10 8 14 14 C 1.43203 * 119.99920 * 0.02562 * 13 11 10 15 15 N 5.44395 * 77.17770 * 297.87906 * 2 1 3 16 16 C 1.37888 * 119.99990 * 180.02562 * 13 11 10 17 17 C 1.46306 * 119.99748 * 186.80231 * 16 13 11 18 18 C 1.40206 * 120.25166 * 39.54678 * 17 16 13 19 19 C 1.37643 * 119.87108 * 179.76403 * 18 17 16 20 20 C 1.38723 * 120.38627 * 0.49276 * 19 18 17 21 21 C 1.38039 * 120.51284 * 359.78384 * 20 19 18 22 22 C 1.38786 * 120.11973 * 359.95302 * 21 20 19 23 23 O 1.35437 * 120.19336 * 179.97438 * 22 21 20 24 24 C 1.34745 * 117.00251 * 4.87782 * 23 22 21 25 25 H 1.08002 * 120.00063 * 354.87636 * 24 23 22 26 26 C 1.38770 * 119.99997 * 174.87260 * 24 23 22 27 27 N 1.31475 * 120.00031 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 119.99790 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.47201 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.46911 * 120.00158 * 28 26 24 31 31 H 1.48502 * 109.47244 * 240.00059 * 28 26 24 32 32 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47589 * 300.00117 * 1 2 3 34 34 H 1.09002 * 109.47374 * 59.99837 * 1 2 3 35 35 H 1.08997 * 109.47537 * 300.00196 * 4 2 1 36 36 H 1.09001 * 109.47022 * 60.00079 * 4 2 1 37 37 H 1.09002 * 109.47534 * 180.02562 * 5 4 2 38 38 H 1.09001 * 109.46938 * 60.00309 * 5 4 2 39 39 H 1.09002 * 109.47548 * 300.00257 * 6 5 4 40 40 H 1.08995 * 109.47452 * 179.97438 * 6 5 4 41 41 H 1.09001 * 109.47042 * 60.00266 * 7 6 5 42 42 H 1.08997 * 109.47270 * 179.97438 * 7 6 5 43 43 H 0.96998 * 119.99593 * 25.00932 * 10 8 2 44 44 H 1.07998 * 120.00004 * 6.80030 * 16 13 11 45 45 H 1.08001 * 120.07072 * 359.97438 * 18 17 16 46 46 H 1.07994 * 119.80543 * 180.25545 * 19 18 17 47 47 H 1.07993 * 119.73782 * 179.76299 * 20 19 18 48 48 H 1.07996 * 119.93997 * 179.97438 * 21 20 19 49 49 H 0.96992 * 119.99740 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7221 -1.2495 8 6 2.0400 -0.7212 -1.2492 9 1 1.6766 -1.7489 -1.2492 10 7 1.5516 -0.0306 -2.4454 11 6 1.4229 -0.7029 -3.6063 12 8 1.7119 -1.8834 -3.6609 13 6 0.9330 -0.0093 -4.8076 14 6 0.5934 1.3803 -4.7435 15 7 0.3219 2.4821 -4.6921 16 6 0.8009 -0.6973 -5.9952 17 6 0.4576 0.0212 -7.2225 18 6 1.0181 1.2794 -7.4847 19 6 0.6934 1.9464 -8.6441 20 6 -0.1938 1.3857 -9.5513 21 6 -0.7593 0.1505 -9.3065 22 6 -0.4427 -0.5430 -8.1467 23 8 -0.9971 -1.7548 -7.9048 24 6 -1.7705 -2.2786 -8.8759 25 1 -1.9919 -1.7003 -9.7608 26 6 -2.2825 -3.5611 -8.7391 27 7 -2.0133 -4.2649 -7.6617 28 14 -3.3552 -4.2870 -10.0851 29 1 -3.5067 -3.2995 -11.1839 30 1 -2.7196 -5.5208 -10.6132 31 1 -4.6916 -4.6179 -9.5286 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.6766 -0.2074 2.1392 36 1 1.6766 -1.7489 1.2493 37 1 3.9333 -1.2360 2.1388 38 1 3.9336 0.3058 1.2488 39 1 3.7158 -2.4709 -0.0001 40 1 5.1694 -1.4434 -0.0006 41 1 3.9332 0.3054 -1.2497 42 1 3.9329 -1.2359 -2.1394 43 1 1.3210 0.9105 -2.4018 44 1 0.9509 -1.7666 -6.0194 45 1 1.7058 1.7229 -6.7800 46 1 1.1289 2.9136 -8.8469 47 1 -0.4441 1.9199 -10.4558 48 1 -1.4492 -0.2772 -10.0189 49 1 -2.3715 -5.1612 -7.5660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022344851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:39 Heat of formation + Delta-G solvation = -18.074282 kcal Electronic energy + Delta-G solvation = -30644.014935 eV Core-core repulsion = 26536.207123 eV Total energy + Delta-G solvation = -4107.807812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.19134 -39.41755 -38.31663 -36.96927 -36.11373 -34.18394 -33.39385 -32.62414 -32.57035 -30.25983 -29.38909 -28.85939 -26.45857 -25.63115 -24.42184 -22.77983 -21.75170 -21.41904 -20.93818 -20.65650 -20.18054 -18.31013 -18.20710 -16.97462 -16.41620 -15.46624 -15.13085 -15.00759 -14.87081 -14.61126 -14.54247 -14.38710 -14.33619 -13.95578 -13.90316 -13.73658 -13.54399 -13.09180 -13.03128 -12.85547 -12.68712 -12.53002 -12.42389 -12.09694 -11.97262 -11.90752 -11.74502 -11.56864 -11.37792 -11.10084 -11.08139 -10.98582 -10.89355 -10.75347 -10.64274 -10.58205 -10.34145 -9.78333 -9.66162 -9.40365 -9.07769 -8.94147 -8.12787 -7.40104 -6.71450 -4.27751 0.79172 2.12260 2.21413 2.97816 2.98268 3.00604 3.01672 3.07583 3.28338 3.75681 3.92266 4.33188 4.36485 4.40909 4.51455 4.65762 4.82064 4.87824 4.90846 4.96469 5.02717 5.21035 5.25208 5.28864 5.31211 5.41411 5.48481 5.53339 5.55745 5.62307 5.70958 5.81485 5.83988 5.84248 5.93112 5.94027 5.96649 5.99563 6.11688 6.14833 6.23966 6.28474 6.38032 6.40911 6.55073 6.59962 6.84828 6.97194 7.08892 7.13898 7.51401 7.61497 7.71104 7.83720 8.42868 8.71661 9.34117 10.43855 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.002595 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.135744 B =10789.057662 C =12373.543596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.152 3.848 9 H 0.091 0.909 10 N -0.728 5.728 11 C 0.584 3.416 12 O -0.533 6.533 13 C -0.203 4.203 14 C 0.269 3.731 15 N -0.443 5.443 16 C 0.139 3.861 17 C -0.203 4.203 18 C -0.033 4.033 19 C -0.218 4.218 20 C -0.048 4.048 21 C -0.232 4.232 22 C 0.181 3.819 23 O -0.151 6.151 24 C -0.396 4.396 25 H 0.099 0.901 26 C 0.045 3.955 27 N -0.840 5.840 28 Si 0.945 3.055 29 H -0.265 1.265 30 H -0.273 1.273 31 H -0.273 1.273 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.158 0.842 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.134 0.866 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 6.601 11.514 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.169 4.169 8 C 0.048 3.952 9 H 0.109 0.891 10 N -0.379 5.379 11 C 0.372 3.628 12 O -0.411 6.411 13 C -0.210 4.210 14 C -0.044 4.044 15 N -0.121 5.121 16 C 0.115 3.885 17 C -0.205 4.205 18 C -0.051 4.051 19 C -0.237 4.237 20 C -0.066 4.066 21 C -0.251 4.251 22 C 0.123 3.877 23 O -0.051 6.051 24 C -0.471 4.471 25 H 0.116 0.884 26 C -0.163 4.163 27 N -0.472 5.472 28 Si 0.769 3.231 29 H -0.189 1.189 30 H -0.198 1.198 31 H -0.198 1.198 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.230 0.770 44 H 0.175 0.825 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.152 0.848 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.658 6.997 11.894 15.782 hybrid contribution -0.615 -0.189 -0.809 1.034 sum 7.043 6.808 11.085 14.793 Atomic orbital electron populations 1.21841 0.94569 1.02441 1.01800 1.21401 0.96199 0.99827 0.94310 0.90883 1.21551 0.95523 1.00974 0.96800 1.21573 0.95573 1.00776 0.97952 1.21495 1.00290 0.99709 0.93980 1.21936 0.95307 1.00994 0.98699 1.20975 0.93448 0.97650 0.83136 0.89064 1.45905 1.68498 1.13865 1.09643 1.17540 0.77007 0.86096 0.82138 1.90833 1.50810 1.14822 1.84646 1.17894 1.20468 0.86880 0.95780 1.25522 0.93044 0.92490 0.93327 1.81189 1.10974 1.11854 1.08079 1.23084 0.76967 1.00015 0.88401 1.17996 1.07395 0.97766 0.97318 1.20972 0.96755 0.91217 0.96157 1.20534 1.04924 1.01318 0.96916 1.20995 0.93911 0.94129 0.97609 1.21160 1.06816 0.97219 0.99889 1.19385 0.90355 0.86484 0.91500 1.83840 1.53999 1.26027 1.41222 1.21539 1.27301 0.99030 0.99227 0.88359 1.25415 0.97659 0.95041 0.98179 1.70002 1.40507 1.10990 1.25687 0.85583 0.78974 0.79283 0.79282 1.18861 1.19786 1.19849 0.92271 0.92615 0.92382 0.91642 0.91512 0.91956 0.92039 0.91600 0.91847 0.91990 0.90999 0.76972 0.82476 0.86774 0.87051 0.86890 0.84813 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.04 37.16 0.34 -1.08 16 2 C -0.10 -0.88 2.30 -90.62 -0.21 -1.09 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 6 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 7 C -0.13 -1.36 5.49 -26.76 -0.15 -1.50 16 8 C 0.15 1.72 1.90 -67.96 -0.13 1.59 16 9 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 10 N -0.73 -9.40 4.34 -55.00 -0.24 -9.64 16 11 C 0.58 9.51 7.71 -12.67 -0.10 9.41 16 12 O -0.53 -10.26 15.97 5.23 0.08 -10.17 16 13 C -0.20 -3.42 5.81 -104.50 -0.61 -4.03 16 14 C 0.27 4.49 10.80 -22.47 -0.24 4.25 16 15 N -0.44 -7.72 18.49 41.83 0.77 -6.95 16 16 C 0.14 2.61 8.97 -36.47 -0.33 2.28 16 17 C -0.20 -4.00 5.42 -104.94 -0.57 -4.57 16 18 C -0.03 -0.58 8.33 -39.06 -0.33 -0.90 16 19 C -0.22 -3.64 10.02 -39.62 -0.40 -4.04 16 20 C -0.05 -0.81 10.03 -39.48 -0.40 -1.21 16 21 C -0.23 -4.60 9.16 -39.45 -0.36 -4.96 16 22 C 0.18 3.99 6.67 -38.40 -0.26 3.74 16 23 O -0.15 -3.89 9.21 1.25 0.01 -3.88 16 24 C -0.40 -10.06 9.49 30.93 0.29 -9.77 16 25 H 0.10 2.29 5.20 -52.49 -0.27 2.02 16 26 C 0.04 1.13 5.50 -17.51 -0.10 1.04 16 27 N -0.84 -22.81 13.67 55.49 0.76 -22.05 16 28 Si 0.94 18.95 29.55 -169.99 -5.02 13.93 16 29 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 30 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 31 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.40 4.68 7.26 -40.82 -0.30 4.38 16 44 H 0.16 3.12 7.61 -52.49 -0.40 2.72 16 45 H 0.11 1.86 6.58 -52.49 -0.35 1.52 16 46 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 48 H 0.13 2.60 5.63 -52.49 -0.30 2.30 16 49 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -28.61 407.51 -8.50 -37.11 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.02 Total: 9.57 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -3.99 Total: -14.05 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 1.29 Total: -38.65 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -28.61 -8.50 -37.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022344851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.033 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds