Wall clock time and date at job start Tue Mar 31 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47657 * 2 1 4 4 C 1.53001 * 109.47237 * 240.00467 * 2 1 3 5 5 C 1.52997 * 109.47598 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47090 * 59.99741 * 5 4 2 7 7 C 1.53000 * 109.47281 * 300.00204 * 6 5 4 8 8 C 1.53001 * 109.47254 * 120.00329 * 2 1 3 9 9 H 1.09003 * 109.47117 * 60.00088 * 8 2 1 10 10 N 1.46497 * 109.47286 * 299.99940 * 8 2 1 11 11 C 1.34775 * 120.00117 * 155.00041 * 10 8 2 12 12 O 1.21647 * 120.00131 * 359.97438 * 11 10 8 13 13 C 1.47109 * 119.99784 * 180.02562 * 11 10 8 14 14 C 1.43197 * 120.00408 * 359.97438 * 13 11 10 15 15 N 5.44395 * 77.17923 * 62.12494 * 2 1 3 16 16 C 1.37883 * 119.99769 * 179.97438 * 13 11 10 17 17 C 1.46304 * 119.99939 * 173.70356 * 16 13 11 18 18 C 1.40206 * 120.25461 * 327.75173 * 17 16 13 19 19 C 1.37633 * 119.87225 * 180.34102 * 18 17 16 20 20 C 1.38718 * 120.38709 * 359.66315 * 19 18 17 21 21 C 1.38032 * 120.51546 * 359.97438 * 20 19 18 22 22 C 1.38785 * 120.11917 * 0.05100 * 21 20 19 23 23 O 1.35440 * 120.19682 * 179.97438 * 22 21 20 24 24 C 1.34745 * 117.00221 * 5.64034 * 23 22 21 25 25 H 1.08008 * 119.99682 * 354.91632 * 24 23 22 26 26 C 1.38763 * 120.00423 * 174.91020 * 24 23 22 27 27 N 1.31473 * 119.99719 * 359.97438 * 26 24 23 28 28 Si 1.86793 * 120.00411 * 180.02562 * 26 24 23 29 29 H 1.48509 * 109.47118 * 270.00069 * 28 26 24 30 30 H 1.48507 * 109.47128 * 29.99630 * 28 26 24 31 31 H 1.48500 * 109.47580 * 149.99623 * 28 26 24 32 32 H 1.09002 * 109.47033 * 299.99767 * 1 2 3 33 33 H 1.09000 * 109.47274 * 59.99574 * 1 2 3 34 34 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 35 35 H 1.09008 * 109.46895 * 300.00312 * 4 2 1 36 36 H 1.09000 * 109.47022 * 59.99804 * 4 2 1 37 37 H 1.09002 * 109.47394 * 179.97438 * 5 4 2 38 38 H 1.08995 * 109.46954 * 300.00278 * 5 4 2 39 39 H 1.08999 * 109.47373 * 59.99998 * 6 5 4 40 40 H 1.09001 * 109.47609 * 179.97438 * 6 5 4 41 41 H 1.09003 * 109.47229 * 300.00157 * 7 6 5 42 42 H 1.08996 * 109.47306 * 179.97438 * 7 6 5 43 43 H 0.97004 * 119.99927 * 334.99639 * 10 8 2 44 44 H 1.08004 * 120.00136 * 353.70689 * 16 13 11 45 45 H 1.08004 * 120.06705 * 0.02562 * 18 17 16 46 46 H 1.08001 * 119.80572 * 179.67601 * 19 18 17 47 47 H 1.08007 * 119.73857 * 180.02562 * 20 19 18 48 48 H 1.08007 * 119.94285 * 180.02562 * 21 20 19 49 49 H 0.96996 * 120.00298 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5699 -0.7218 -1.2491 6 6 4.0795 -1.4434 0.0001 7 6 3.5695 -0.7223 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -1.7490 1.2491 10 7 1.5517 -0.0308 2.4454 11 6 1.4230 -0.7032 3.6063 12 8 1.7119 -1.8836 3.6608 13 6 0.9322 -0.0099 4.8074 14 6 0.5916 1.3795 4.7432 15 7 0.3219 2.4818 4.6923 16 6 0.8000 -0.6980 5.9949 17 6 0.4449 0.0187 7.2200 18 6 0.8698 1.3408 7.4134 19 6 0.5371 2.0052 8.5719 20 6 -0.2227 1.3769 9.5477 21 6 -0.6558 0.0783 9.3706 22 6 -0.3322 -0.6117 8.2108 23 8 -0.7559 -1.8862 8.0357 24 6 -1.5857 -2.3889 8.9707 25 1 -1.8183 -1.8112 9.8531 26 6 -2.1416 -3.6488 8.7998 27 7 -1.8590 -4.3518 7.7254 28 14 -3.2926 -4.3455 10.0957 29 1 -2.5050 -5.1021 11.1021 30 1 -4.0143 -3.2340 10.7658 31 1 -4.2735 -5.2542 9.4497 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1392 37 1 3.9333 -1.2359 -2.1389 38 1 3.9336 0.3057 -1.2487 39 1 3.7157 -2.4710 -0.0001 40 1 5.1695 -1.4443 0.0002 41 1 3.9332 0.3053 1.2497 42 1 3.9321 -1.2367 2.1394 43 1 1.3210 0.9104 2.4019 44 1 0.9588 -1.7660 6.0208 45 1 1.4614 1.8352 6.6570 46 1 0.8695 3.0218 8.7221 47 1 -0.4781 1.9083 10.4526 48 1 -1.2473 -0.4018 10.1362 49 1 -1.2617 -3.9900 7.0523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022344855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:43 Heat of formation + Delta-G solvation = -21.867493 kcal Electronic energy + Delta-G solvation = -30697.935206 eV Core-core repulsion = 26589.962907 eV Total energy + Delta-G solvation = -4107.972298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.25067 -39.56019 -38.38105 -37.17877 -36.20089 -34.23349 -33.47013 -32.66008 -32.61076 -30.31585 -29.44581 -28.89096 -26.48979 -25.27497 -24.49377 -22.82602 -21.85984 -21.46903 -20.98006 -20.72158 -20.21876 -18.73191 -18.27669 -16.94259 -16.46029 -15.64811 -15.28349 -15.08245 -14.93461 -14.60865 -14.52008 -14.43576 -14.37092 -14.07889 -13.96655 -13.89830 -13.59622 -13.26585 -13.07106 -13.03547 -12.74677 -12.60452 -12.52524 -12.13033 -12.04426 -11.78392 -11.65223 -11.41435 -11.38867 -11.11211 -11.00438 -10.96772 -10.78593 -10.67697 -10.64011 -10.44998 -10.37682 -9.84568 -9.78709 -9.52911 -9.04052 -8.99447 -8.19410 -7.48339 -7.07551 -4.33884 0.64899 2.05593 2.16693 2.90591 2.90991 3.11046 3.16730 3.22912 3.30179 3.84639 3.87437 4.27945 4.28955 4.37443 4.48136 4.62430 4.66675 4.84406 4.89440 4.91501 4.98470 5.17724 5.21866 5.25295 5.27047 5.32077 5.42219 5.48677 5.51405 5.53878 5.67534 5.74665 5.78514 5.80937 5.84506 5.90276 5.93486 5.96253 6.07982 6.09974 6.17895 6.24528 6.28037 6.29851 6.45887 6.54895 6.83698 6.89025 7.01454 7.24208 7.39264 7.56155 7.75711 8.06911 8.36869 8.54970 9.19393 10.35175 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.002594 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.050672 B =10789.597415 C =12373.981235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.152 3.848 9 H 0.091 0.909 10 N -0.728 5.728 11 C 0.584 3.416 12 O -0.535 6.535 13 C -0.208 4.208 14 C 0.270 3.730 15 N -0.444 5.444 16 C 0.132 3.868 17 C -0.204 4.204 18 C -0.034 4.034 19 C -0.216 4.216 20 C -0.046 4.046 21 C -0.228 4.228 22 C 0.184 3.816 23 O -0.173 6.173 24 C -0.471 4.471 25 H 0.092 0.908 26 C 0.016 3.984 27 N -0.856 5.856 28 Si 1.099 2.901 29 H -0.277 1.277 30 H -0.280 1.280 31 H -0.272 1.272 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.155 0.845 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.136 0.864 49 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 7.526 -11.604 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.169 4.169 8 C 0.048 3.952 9 H 0.109 0.891 10 N -0.379 5.379 11 C 0.373 3.627 12 O -0.413 6.413 13 C -0.216 4.216 14 C -0.042 4.042 15 N -0.122 5.122 16 C 0.109 3.891 17 C -0.206 4.206 18 C -0.052 4.052 19 C -0.235 4.235 20 C -0.064 4.064 21 C -0.247 4.247 22 C 0.126 3.874 23 O -0.073 6.073 24 C -0.545 4.545 25 H 0.110 0.890 26 C -0.193 4.193 27 N -0.484 5.484 28 Si 0.922 3.078 29 H -0.203 1.203 30 H -0.205 1.205 31 H -0.197 1.197 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.230 0.770 44 H 0.172 0.828 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.153 0.847 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.428 6.766 -11.506 14.815 hybrid contribution 0.915 1.621 -0.154 1.868 sum 7.342 8.387 -11.660 16.131 Atomic orbital electron populations 1.21839 0.94577 1.02429 1.01802 1.21403 0.96191 0.99840 0.94308 0.90870 1.21554 0.95537 1.00972 0.96787 1.21573 0.95558 1.00787 0.97958 1.21494 1.00319 0.99700 0.93964 1.21936 0.95275 1.01009 0.98716 1.20983 0.93484 0.97631 0.83120 0.89074 1.45903 1.68448 1.13868 1.09639 1.17518 0.76995 0.86082 0.82132 1.90826 1.50978 1.14874 1.84669 1.17825 1.20962 0.86944 0.95828 1.25483 0.93117 0.92515 0.93107 1.81218 1.10960 1.11784 1.08268 1.23004 0.77871 0.99802 0.88471 1.17975 1.11632 0.95342 0.95680 1.21113 0.96252 0.91325 0.96543 1.20567 1.06484 1.00386 0.96100 1.21029 0.93921 0.93887 0.97591 1.21178 1.07919 0.96141 0.99493 1.19287 0.92159 0.84042 0.91899 1.83514 1.54731 1.21523 1.47580 1.22479 1.26080 1.04308 1.01641 0.89030 1.26746 0.99167 0.91578 1.01789 1.70507 1.31073 1.38883 1.07938 0.83050 0.75224 0.76289 0.73267 1.20315 1.20537 1.19715 0.92429 0.92567 0.92279 0.91508 0.91613 0.91921 0.92028 0.91605 0.91821 0.91972 0.91021 0.76961 0.82786 0.86451 0.86911 0.86704 0.84672 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.04 37.15 0.34 -1.05 16 2 C -0.10 -0.87 2.30 -90.62 -0.21 -1.08 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -0.84 5.20 -26.73 -0.14 -0.98 16 5 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.13 -1.35 5.49 -26.75 -0.15 -1.49 16 8 C 0.15 1.69 1.90 -67.96 -0.13 1.56 16 9 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 10 N -0.73 -9.25 4.34 -55.00 -0.24 -9.49 16 11 C 0.58 9.36 7.71 -12.66 -0.10 9.26 16 12 O -0.54 -10.13 15.96 5.24 0.08 -10.04 16 13 C -0.21 -3.45 5.84 -104.50 -0.61 -4.06 16 14 C 0.27 4.43 10.53 -22.47 -0.24 4.20 16 15 N -0.44 -7.60 18.04 41.84 0.75 -6.84 16 16 C 0.13 2.44 9.03 -36.47 -0.33 2.11 16 17 C -0.20 -4.01 5.56 -104.94 -0.58 -4.59 16 18 C -0.03 -0.60 8.29 -39.06 -0.32 -0.93 16 19 C -0.22 -3.62 10.02 -39.63 -0.40 -4.02 16 20 C -0.05 -0.77 10.03 -39.48 -0.40 -1.17 16 21 C -0.23 -4.54 9.16 -39.45 -0.36 -4.90 16 22 C 0.18 4.04 6.67 -38.40 -0.26 3.78 16 23 O -0.17 -4.36 8.58 1.24 0.01 -4.35 16 24 C -0.47 -11.96 9.49 30.93 0.29 -11.67 16 25 H 0.09 2.17 5.21 -52.48 -0.27 1.89 16 26 C 0.02 0.41 5.49 -17.51 -0.10 0.32 16 27 N -0.86 -23.63 13.69 55.48 0.76 -22.87 16 28 Si 1.10 21.76 29.92 -169.99 -5.09 16.68 16 29 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 30 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 31 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 32 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.40 4.60 7.26 -40.82 -0.30 4.31 16 44 H 0.15 2.96 7.56 -52.48 -0.40 2.56 16 45 H 0.12 1.96 5.65 -52.48 -0.30 1.66 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 48 H 0.14 2.65 5.64 -52.48 -0.30 2.36 16 49 H 0.29 8.16 7.97 -40.82 -0.33 7.83 16 LS Contribution 405.45 15.07 6.11 6.11 Total: -1.00 -28.42 405.45 -8.56 -36.98 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.96 Total: 10.72 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -4.00 Total: -16.89 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 1.28 Total: -39.20 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.09 Total: -14.40 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.09 Total: 16.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -28.42 -8.56 -36.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022344855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.108 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds