Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21290 * 120.00122 * 2 1 4 4 C 1.46855 * 119.99995 * 179.97438 * 2 1 3 5 5 C 1.40038 * 120.11596 * 179.97438 * 4 2 1 6 6 C 1.37118 * 119.88253 * 180.02562 * 5 4 2 7 7 C 1.39082 * 120.11803 * 0.02612 * 6 5 4 8 8 O 1.35664 * 119.88348 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99702 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47308 * 180.02562 * 9 8 7 11 11 O 1.21299 * 119.99512 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00347 * 180.02562 * 10 9 8 13 13 C 1.39989 * 119.99787 * 175.48970 * 12 10 9 14 14 C 1.38925 * 119.99993 * 214.84722 * 13 12 10 15 15 C 1.38000 * 119.99647 * 179.77116 * 14 13 12 16 16 C 1.38909 * 120.00411 * 0.48632 * 15 14 13 17 17 O 1.35779 * 120.00128 * 179.74844 * 16 15 14 18 18 C 1.34814 * 117.00162 * 185.36181 * 17 16 15 19 19 H 1.08004 * 119.99734 * 354.96948 * 18 17 16 20 20 C 1.38632 * 120.00217 * 174.96158 * 18 17 16 21 21 N 1.31573 * 119.99836 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00036 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47064 * 90.00244 * 22 20 18 24 24 H 1.48494 * 109.46838 * 210.00104 * 22 20 18 25 25 H 1.48497 * 109.46910 * 329.99821 * 22 20 18 26 26 C 1.38910 * 120.00323 * 359.76555 * 16 15 14 27 27 C 1.38003 * 119.99829 * 0.02562 * 26 16 15 28 28 C 1.39072 * 120.22897 * 0.24910 * 7 6 5 29 29 C 1.37125 * 120.11577 * 359.45207 * 28 7 6 30 30 H 1.09000 * 109.47223 * 239.99911 * 1 2 3 31 31 H 1.08997 * 109.47144 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.46959 * 119.99938 * 1 2 3 33 33 H 1.07997 * 120.05634 * 0.02562 * 5 4 2 34 34 H 1.07995 * 119.93958 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47144 * 300.00147 * 9 8 7 36 36 H 1.09004 * 109.47072 * 60.00080 * 9 8 7 37 37 H 0.97005 * 119.99685 * 355.49103 * 12 10 9 38 38 H 1.07993 * 120.00069 * 0.02562 * 14 13 12 39 39 H 1.07999 * 119.99894 * 180.21508 * 15 14 13 40 40 H 0.96994 * 119.99979 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.00100 * 179.97438 * 26 16 15 42 42 H 1.08003 * 120.00159 * 179.97438 * 27 26 16 43 43 H 1.07994 * 119.94577 * 179.72673 * 28 7 6 44 44 H 1.07997 * 120.05726 * 180.27617 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2718 0.0006 5 6 3.6417 -1.2746 0.0000 6 6 4.3224 -2.4649 0.0000 7 6 3.6246 -3.6680 0.0000 8 8 4.3029 -4.8429 -0.0005 9 6 3.5246 -6.0413 0.0001 10 6 4.4425 -7.2365 0.0000 11 8 5.6451 -7.0775 0.0000 12 7 3.9274 -8.4819 0.0000 13 6 4.7767 -9.5906 -0.0954 14 6 4.3666 -10.7221 -0.7892 15 6 5.2057 -11.8132 -0.8873 16 6 6.4565 -11.7841 -0.2837 17 8 7.2801 -12.8596 -0.3758 18 6 8.4315 -12.8106 0.3237 19 1 8.7015 -11.9109 0.8569 20 6 9.2689 -13.9148 0.3588 21 7 8.9401 -15.0106 -0.2911 22 14 10.8639 -13.8471 1.3286 23 1 10.6166 -14.3012 2.7205 24 1 11.8695 -14.7337 0.6900 25 1 11.3737 -12.4524 1.3460 26 6 6.8646 -10.6547 0.4146 27 6 6.0272 -9.5618 0.5090 28 6 2.2339 -3.6707 -0.0052 29 6 1.5435 -2.4860 0.0009 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 4.1845 -0.3410 -0.0004 34 1 5.4024 -2.4682 0.0000 35 1 2.8964 -6.0661 0.8906 36 1 2.8951 -6.0661 -0.8895 37 1 2.9681 -8.6099 0.0661 38 1 3.3927 -10.7463 -1.2553 39 1 4.8883 -12.6916 -1.4296 40 1 9.5261 -15.7831 -0.2669 41 1 7.8368 -10.6322 0.8842 42 1 6.3443 -8.6838 1.0522 43 1 1.6967 -4.6076 -0.0097 44 1 0.4635 -2.4893 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023149809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -72.504120 kcal Electronic energy + Delta-G solvation = -28513.814082 eV Core-core repulsion = 24170.094258 eV Total energy + Delta-G solvation = -4343.719824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03873 -40.24494 -39.52626 -38.67017 -37.45182 -36.48017 -34.13790 -32.41373 -32.23089 -31.27032 -30.33641 -30.12912 -28.98156 -27.31350 -25.30030 -23.93838 -23.29248 -22.43269 -21.58561 -20.37936 -20.21157 -18.91288 -18.30266 -17.78789 -17.07506 -16.95054 -16.78151 -16.39892 -16.14401 -15.42319 -15.33415 -14.88133 -14.82475 -14.53448 -14.28261 -14.13157 -13.98398 -13.69700 -13.62969 -13.48417 -13.05502 -12.95472 -12.92136 -12.66274 -12.61616 -12.55636 -11.83159 -11.66703 -11.61364 -11.49339 -11.40730 -11.04999 -10.81527 -10.45867 -10.20269 -9.87339 -9.78289 -9.64451 -9.25151 -8.76429 -8.74774 -8.27811 -7.03070 -6.48448 -4.06133 0.23412 0.84367 1.92866 1.96710 2.13724 2.20269 2.64629 3.12721 3.13598 3.18377 3.29428 3.38519 3.64347 3.95056 4.10186 4.28942 4.35277 4.47420 4.54279 4.58460 4.61477 4.70681 4.79205 4.88736 4.98346 5.05663 5.08857 5.19910 5.40757 5.44703 5.59419 5.62997 5.67433 5.73133 5.93530 6.02300 6.08568 6.13263 6.24785 6.63498 6.73125 6.82427 6.91819 7.01481 7.10609 7.24562 7.37890 7.51826 7.69162 7.96482 8.15145 8.97284 9.65285 10.69224 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.001446 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.853266 B =19364.603051 C =20232.973602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.398 3.602 3 O -0.465 6.465 4 C -0.220 4.220 5 C -0.018 4.018 6 C -0.162 4.162 7 C 0.169 3.831 8 O -0.281 6.281 9 C 0.041 3.959 10 C 0.505 3.495 11 O -0.500 6.500 12 N -0.654 5.654 13 C 0.028 3.972 14 C -0.089 4.089 15 C -0.178 4.178 16 C 0.148 3.852 17 O -0.175 6.175 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.221 4.221 27 C -0.062 4.062 28 C -0.227 4.227 29 C -0.028 4.028 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.403 0.597 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.270 0.730 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.889 22.814 1.239 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.277 3.723 3 O -0.341 6.341 4 C -0.221 4.221 5 C -0.037 4.037 6 C -0.180 4.180 7 C 0.122 3.878 8 O -0.192 6.192 9 C -0.038 4.038 10 C 0.290 3.710 11 O -0.374 6.374 12 N -0.300 5.300 13 C -0.064 4.064 14 C -0.109 4.109 15 C -0.198 4.198 16 C 0.094 3.906 17 O -0.078 6.078 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.241 4.241 27 C -0.082 4.082 28 C -0.246 4.246 29 C -0.046 4.046 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.389 23.015 1.056 29.478 hybrid contribution -0.019 -0.275 0.495 0.566 sum -18.408 22.740 1.551 29.298 Atomic orbital electron populations 1.22254 0.93858 1.05187 1.04480 1.22348 0.91598 0.87527 0.70799 1.90554 1.72187 1.34359 1.37028 1.20406 0.94555 0.94789 1.12329 1.21123 0.93034 0.97971 0.91523 1.20374 1.01327 0.89179 1.07136 1.19473 0.90678 0.85951 0.91737 1.86162 1.34464 1.11459 1.87080 1.22557 0.93852 0.83219 1.04138 1.19949 0.89234 0.83687 0.78175 1.90786 1.14870 1.85206 1.46528 1.42937 1.10004 1.03993 1.73071 1.17184 0.93764 0.87988 1.07432 1.20335 0.99271 0.92713 0.98624 1.19993 0.92991 0.99698 1.07134 1.19429 0.90224 0.87865 0.93099 1.83971 1.28722 1.34388 1.60685 1.21357 0.95133 1.01014 1.29277 0.88939 1.25291 0.99477 0.94276 0.97389 1.70041 1.37393 1.02934 1.39218 0.85703 0.79813 0.78814 0.79107 1.19832 1.20217 1.19102 1.21112 1.01945 0.93933 1.07078 1.20857 0.92672 0.97717 0.96967 1.21146 0.92837 0.99887 1.10716 1.21093 1.00030 0.90770 0.92711 0.88853 0.89726 0.88845 0.84142 0.84097 0.88584 0.88479 0.76251 0.86633 0.85947 0.91967 0.85101 0.85706 0.84571 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.73 8.92 36.01 0.32 -0.41 16 2 C 0.40 3.00 7.22 -30.82 -0.22 2.78 16 3 O -0.46 -5.21 17.07 5.55 0.09 -5.12 16 4 C -0.22 -1.63 5.87 -105.06 -0.62 -2.24 16 5 C -0.02 -0.15 9.57 -39.31 -0.38 -0.53 16 6 C -0.16 -1.44 9.95 -39.68 -0.39 -1.84 16 7 C 0.17 1.51 6.70 -38.96 -0.26 1.25 16 8 O -0.28 -3.09 9.65 -38.60 -0.37 -3.46 16 9 C 0.04 0.33 5.21 36.01 0.19 0.52 16 10 C 0.50 6.49 7.75 -10.99 -0.09 6.40 16 11 O -0.50 -9.06 13.94 -14.37 -0.20 -9.26 16 12 N -0.65 -7.75 5.34 -9.82 -0.05 -7.80 16 13 C 0.03 0.47 6.30 -83.62 -0.53 -0.06 16 14 C -0.09 -1.46 9.96 -39.41 -0.39 -1.85 16 15 C -0.18 -3.57 9.98 -39.42 -0.39 -3.96 16 16 C 0.15 3.52 6.65 -39.08 -0.26 3.26 16 17 O -0.17 -4.91 9.76 0.00 0.00 -4.91 16 18 C -0.39 -10.88 9.48 30.88 0.29 -10.59 16 19 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 22 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.22 -4.89 9.16 -39.42 -0.36 -5.25 16 27 C -0.06 -1.22 8.69 -39.41 -0.34 -1.56 16 28 C -0.23 -1.42 8.99 -39.68 -0.36 -1.77 16 29 C -0.03 -0.15 9.44 -39.31 -0.37 -0.52 16 30 H 0.09 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.09 0.18 8.08 -51.93 -0.42 -0.24 16 33 H 0.14 1.11 7.64 -52.49 -0.40 0.71 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.10 0.47 7.66 -51.93 -0.40 0.07 16 36 H 0.10 0.49 7.64 -51.93 -0.40 0.10 16 37 H 0.40 2.93 8.82 -40.82 -0.36 2.57 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.13 2.93 5.63 -52.49 -0.30 2.64 16 42 H 0.13 2.44 6.23 -52.48 -0.33 2.11 16 43 H 0.14 0.48 6.27 -52.49 -0.33 0.16 16 44 H 0.14 0.30 7.04 -52.49 -0.37 -0.07 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -36.57 384.52 -8.07 -44.64 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.81 Total: 4.25 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -4.25 Total: -15.38 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.71 Total: -32.01 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.48 Total: -22.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.57 -8.07 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023149809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.867 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds