Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21290 * 120.00122 * 2 1 4 4 C 1.46855 * 119.99995 * 179.97438 * 2 1 3 5 5 C 1.40038 * 120.11596 * 179.97438 * 4 2 1 6 6 C 1.37118 * 119.88253 * 180.02562 * 5 4 2 7 7 C 1.39082 * 120.11803 * 0.02612 * 6 5 4 8 8 O 1.35664 * 119.88348 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99702 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47308 * 180.02562 * 9 8 7 11 11 O 1.21299 * 119.99512 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00347 * 180.02562 * 10 9 8 13 13 C 1.39989 * 119.99787 * 175.48970 * 12 10 9 14 14 C 1.38925 * 119.99993 * 214.84722 * 13 12 10 15 15 C 1.38000 * 119.99647 * 179.77116 * 14 13 12 16 16 C 1.38909 * 120.00411 * 0.48632 * 15 14 13 17 17 O 1.35779 * 120.00128 * 179.74844 * 16 15 14 18 18 C 1.34814 * 117.00162 * 185.36181 * 17 16 15 19 19 H 1.08004 * 119.99734 * 354.96948 * 18 17 16 20 20 C 1.38632 * 120.00217 * 174.96158 * 18 17 16 21 21 N 1.31573 * 119.99836 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00036 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47064 * 90.00244 * 22 20 18 24 24 H 1.48494 * 109.46838 * 210.00104 * 22 20 18 25 25 H 1.48497 * 109.46910 * 329.99821 * 22 20 18 26 26 C 1.38910 * 120.00323 * 359.76555 * 16 15 14 27 27 C 1.38003 * 119.99829 * 0.02562 * 26 16 15 28 28 C 1.39072 * 120.22897 * 0.24910 * 7 6 5 29 29 C 1.37125 * 120.11577 * 359.45207 * 28 7 6 30 30 H 1.09000 * 109.47223 * 239.99911 * 1 2 3 31 31 H 1.08997 * 109.47144 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.46959 * 119.99938 * 1 2 3 33 33 H 1.07997 * 120.05634 * 0.02562 * 5 4 2 34 34 H 1.07995 * 119.93958 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47144 * 300.00147 * 9 8 7 36 36 H 1.09004 * 109.47072 * 60.00080 * 9 8 7 37 37 H 0.97005 * 119.99685 * 355.49103 * 12 10 9 38 38 H 1.07993 * 120.00069 * 0.02562 * 14 13 12 39 39 H 1.07999 * 119.99894 * 180.21508 * 15 14 13 40 40 H 0.96994 * 119.99979 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.00100 * 179.97438 * 26 16 15 42 42 H 1.08003 * 120.00159 * 179.97438 * 27 26 16 43 43 H 1.07994 * 119.94577 * 179.72673 * 28 7 6 44 44 H 1.07997 * 120.05726 * 180.27617 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2718 0.0006 5 6 3.6417 -1.2746 0.0000 6 6 4.3224 -2.4649 0.0000 7 6 3.6246 -3.6680 0.0000 8 8 4.3029 -4.8429 -0.0005 9 6 3.5246 -6.0413 0.0001 10 6 4.4425 -7.2365 0.0000 11 8 5.6451 -7.0775 0.0000 12 7 3.9274 -8.4819 0.0000 13 6 4.7767 -9.5906 -0.0954 14 6 4.3666 -10.7221 -0.7892 15 6 5.2057 -11.8132 -0.8873 16 6 6.4565 -11.7841 -0.2837 17 8 7.2801 -12.8596 -0.3758 18 6 8.4315 -12.8106 0.3237 19 1 8.7015 -11.9109 0.8569 20 6 9.2689 -13.9148 0.3588 21 7 8.9401 -15.0106 -0.2911 22 14 10.8639 -13.8471 1.3286 23 1 10.6166 -14.3012 2.7205 24 1 11.8695 -14.7337 0.6900 25 1 11.3737 -12.4524 1.3460 26 6 6.8646 -10.6547 0.4146 27 6 6.0272 -9.5618 0.5090 28 6 2.2339 -3.6707 -0.0052 29 6 1.5435 -2.4860 0.0009 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 4.1845 -0.3410 -0.0004 34 1 5.4024 -2.4682 0.0000 35 1 2.8964 -6.0661 0.8906 36 1 2.8951 -6.0661 -0.8895 37 1 2.9681 -8.6099 0.0661 38 1 3.3927 -10.7463 -1.2553 39 1 4.8883 -12.6916 -1.4296 40 1 9.5261 -15.7831 -0.2669 41 1 7.8368 -10.6322 0.8842 42 1 6.3443 -8.6838 1.0522 43 1 1.6967 -4.6076 -0.0097 44 1 0.4635 -2.4893 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023149809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = -97.140176 kcal Electronic energy + Delta-G solvation = -28514.882381 eV Core-core repulsion = 24170.094258 eV Total energy + Delta-G solvation = -4344.788123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81755 -41.24292 -40.49524 -40.00803 -38.33925 -37.82348 -35.48274 -34.19859 -32.92203 -31.89018 -31.78436 -30.97893 -29.75760 -28.48050 -27.19680 -24.50894 -24.17065 -23.77562 -22.92861 -21.46346 -20.85106 -19.99806 -19.52379 -19.24936 -18.33247 -17.87483 -17.52955 -17.45043 -16.92836 -16.36378 -16.20761 -15.95193 -15.86415 -15.68345 -15.49683 -15.38803 -15.27615 -14.89972 -14.65526 -14.53120 -14.17153 -14.07074 -13.65915 -13.53032 -13.50206 -13.26497 -13.21230 -12.98909 -12.95803 -12.71557 -12.46552 -12.14748 -12.10446 -11.93400 -11.44026 -11.17960 -10.84693 -10.77065 -10.54637 -10.15747 -9.84897 -9.34552 -8.64832 -8.48423 -6.15203 -0.32418 0.33361 0.48467 0.53773 1.34189 1.39293 1.41048 1.42496 1.50836 1.56753 2.16790 2.55816 2.76519 2.80520 3.13469 3.18352 3.46412 3.51673 3.74936 3.85291 4.00477 4.09760 4.10701 4.13012 4.15565 4.28492 4.36482 4.47211 4.48290 4.65226 4.68534 4.72586 4.73714 4.96373 5.05819 5.06942 5.11416 5.16176 5.25048 5.33004 5.42138 5.44467 5.56009 5.60706 5.69297 6.00980 6.13136 6.22923 6.49620 6.59383 6.96427 7.16618 7.75263 8.74142 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.001446 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.853266 B =19364.603051 C =20232.973602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.516 6.516 4 C -0.232 4.232 5 C -0.034 4.034 6 C -0.184 4.184 7 C 0.154 3.846 8 O -0.317 6.317 9 C 0.046 3.954 10 C 0.502 3.498 11 O -0.561 6.561 12 N -0.637 5.637 13 C 0.060 3.940 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.107 3.893 17 O -0.227 6.227 18 C -0.415 4.415 19 H 0.096 0.904 20 C -0.018 4.018 21 N -0.916 5.916 22 Si 1.015 2.985 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.232 4.232 27 C -0.078 4.078 28 C -0.218 4.218 29 C -0.013 4.013 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.433 0.567 38 H 0.174 0.826 39 H 0.130 0.870 40 H 0.273 0.727 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.176 0.824 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.807 24.178 1.415 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.279 3.721 3 O -0.397 6.397 4 C -0.233 4.233 5 C -0.052 4.052 6 C -0.202 4.202 7 C 0.108 3.892 8 O -0.230 6.230 9 C -0.031 4.031 10 C 0.290 3.710 11 O -0.438 6.438 12 N -0.286 5.286 13 C -0.033 4.033 14 C -0.090 4.090 15 C -0.200 4.200 16 C 0.056 3.944 17 O -0.134 6.134 18 C -0.491 4.491 19 H 0.113 0.887 20 C -0.216 4.216 21 N -0.554 5.554 22 Si 0.834 3.166 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.252 4.252 27 C -0.098 4.098 28 C -0.236 4.236 29 C -0.030 4.030 30 H 0.138 0.862 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.273 0.727 38 H 0.191 0.809 39 H 0.148 0.852 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.193 0.807 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -23.418 24.425 1.238 33.860 hybrid contribution 1.191 -0.379 0.403 1.314 sum -22.227 24.046 1.641 32.786 Atomic orbital electron populations 1.22300 0.90236 1.05780 1.06849 1.23035 0.93561 0.86697 0.68843 1.90544 1.73508 1.35926 1.39677 1.20641 0.94048 0.96098 1.12535 1.21127 0.94179 0.97388 0.92514 1.20382 1.01067 0.90137 1.08639 1.19599 0.92011 0.84875 0.92732 1.86100 1.36444 1.12684 1.87733 1.22750 0.92318 0.79920 1.08143 1.20953 0.89183 0.84953 0.75923 1.90786 1.17976 1.86090 1.48934 1.42813 1.10951 1.02485 1.72384 1.17324 0.92818 0.89324 1.03871 1.20815 1.00637 0.90610 0.96970 1.20367 0.91991 1.01390 1.06268 1.19987 0.91604 0.87625 0.95162 1.83931 1.29784 1.36650 1.62993 1.21753 0.95892 1.01623 1.29849 0.88667 1.26487 1.03108 0.93590 0.98404 1.70166 1.39348 1.03962 1.41915 0.84643 0.75014 0.79161 0.77770 1.18612 1.19280 1.18321 1.21092 1.01984 0.94727 1.07417 1.20937 0.94103 0.96708 0.98023 1.21554 0.91354 1.01814 1.08886 1.21542 1.02021 0.89260 0.90227 0.86202 0.90276 0.86202 0.85328 0.85460 0.84250 0.84245 0.72699 0.80852 0.85180 0.91749 0.86888 0.85929 0.80659 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.68 8.92 71.24 0.64 -0.05 16 2 C 0.40 5.35 7.22 27.94 0.20 5.55 16 3 O -0.52 -11.85 17.07 -3.06 -0.05 -11.90 16 4 C -0.23 -2.97 5.87 -20.15 -0.12 -3.09 16 5 C -0.03 -0.58 9.57 22.44 0.21 -0.36 16 6 C -0.18 -3.34 9.95 22.21 0.22 -3.12 16 7 C 0.15 2.39 6.70 22.67 0.15 2.54 16 8 O -0.32 -6.18 9.65 -70.77 -0.68 -6.87 16 9 C 0.05 0.49 5.21 71.24 0.37 0.86 16 10 C 0.50 11.07 7.75 87.66 0.68 11.75 16 11 O -0.56 -19.76 13.94 15.95 0.22 -19.53 16 12 N -0.64 -11.92 5.34 -303.37 -1.62 -13.54 16 13 C 0.06 1.81 6.30 38.17 0.24 2.05 16 14 C -0.07 -2.03 9.96 22.38 0.22 -1.81 16 15 C -0.18 -7.08 9.98 22.37 0.22 -6.86 16 16 C 0.11 5.29 6.65 22.59 0.15 5.45 16 17 O -0.23 -13.64 9.76 -22.90 -0.22 -13.86 16 18 C -0.42 -24.58 9.48 67.91 0.64 -23.94 16 19 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 20 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 21 N -0.92 -55.99 13.67 21.61 0.30 -55.69 16 22 Si 1.01 43.69 29.55 68.60 2.03 45.72 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 C -0.23 -10.77 9.16 22.38 0.20 -10.56 16 27 C -0.08 -3.03 8.69 22.38 0.19 -2.83 16 28 C -0.22 -1.56 8.99 22.21 0.20 -1.36 16 29 C -0.01 -0.07 9.44 22.45 0.21 0.14 16 30 H 0.12 -0.17 8.08 -2.39 -0.02 -0.19 16 31 H 0.08 0.41 8.12 -2.39 -0.02 0.40 16 32 H 0.12 -0.17 8.08 -2.38 -0.02 -0.19 16 33 H 0.13 2.35 7.64 -2.91 -0.02 2.32 16 34 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.14 0.34 7.66 -2.39 -0.02 0.32 16 36 H 0.14 0.37 7.64 -2.38 -0.02 0.35 16 37 H 0.43 3.22 8.82 -92.70 -0.82 2.40 16 38 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.11 5.49 5.63 -2.91 -0.02 5.47 16 42 H 0.12 4.85 6.23 -2.91 -0.02 4.83 16 43 H 0.18 -0.18 6.27 -2.91 -0.02 -0.20 16 44 H 0.18 -0.52 7.04 -2.91 -0.02 -0.54 16 Total: -1.00 -92.32 384.52 5.34 -86.98 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.26 Total: 14.90 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 5.12 Total: -26.19 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.32 Total: -69.24 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.74 Total: -52.17 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -92.32 5.34 -86.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023149809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.163 kcal (2) G-P(sol) polarization free energy of solvation -92.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds