Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38266 * 119.94489 * 2 1 4 4 C 1.38147 * 120.05266 * 179.97438 * 3 2 1 5 5 C 1.38731 * 119.94270 * 359.97438 * 4 3 2 6 6 O 1.35904 * 120.04911 * 179.97438 * 5 4 3 7 7 C 1.42904 * 116.99736 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47113 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46913 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46804 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00203 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99730 * 180.02562 * 10 9 8 13 13 C 1.39992 * 119.99945 * 175.48800 * 12 10 9 14 14 C 1.38924 * 120.00051 * 214.84938 * 13 12 10 15 15 C 1.37998 * 119.99430 * 179.76207 * 14 13 12 16 16 C 1.38911 * 120.00580 * 0.48903 * 15 14 13 17 17 O 1.35779 * 120.00003 * 179.74294 * 16 15 14 18 18 C 1.34812 * 116.99857 * 185.36503 * 17 16 15 19 19 H 1.07999 * 119.99887 * 354.96331 * 18 17 16 20 20 C 1.38627 * 120.00084 * 174.96625 * 18 17 16 21 21 N 1.31571 * 119.99933 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47239 * 59.99879 * 22 20 18 24 24 H 1.48505 * 109.46656 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47006 * 299.99375 * 22 20 18 26 26 C 1.38904 * 119.99984 * 359.76282 * 16 15 14 27 27 C 1.38006 * 120.00153 * 0.02562 * 26 16 15 28 28 C 1.38728 * 119.89079 * 0.25405 * 5 4 3 29 29 C 1.38146 * 119.94573 * 359.49187 * 28 5 4 30 30 H 1.09002 * 109.47028 * 89.99830 * 1 2 3 31 31 H 1.08996 * 109.47419 * 210.00060 * 1 2 3 32 32 H 1.09002 * 109.46841 * 329.99821 * 1 2 3 33 33 H 1.07998 * 119.97548 * 359.95765 * 3 2 1 34 34 H 1.07998 * 120.02365 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47733 * 300.00632 * 7 6 5 36 36 H 1.09008 * 109.46585 * 60.00294 * 7 6 5 37 37 H 1.08992 * 109.47413 * 300.00430 * 8 7 6 38 38 H 1.09006 * 109.46590 * 60.00609 * 8 7 6 39 39 H 1.09000 * 109.46987 * 299.99967 * 9 8 7 40 40 H 1.08998 * 109.47451 * 60.00386 * 9 8 7 41 41 H 0.97005 * 120.00152 * 355.49251 * 12 10 9 42 42 H 1.07996 * 120.00022 * 0.02562 * 14 13 12 43 43 H 1.08004 * 119.99924 * 180.20957 * 15 14 13 44 44 H 0.97005 * 120.00282 * 180.02562 * 21 20 18 45 45 H 1.07996 * 119.99842 * 179.97438 * 26 16 15 46 46 H 1.08006 * 119.99935 * 179.97438 * 27 26 16 47 47 H 1.08000 * 120.02624 * 179.72079 * 28 5 4 48 48 H 1.07994 * 119.97543 * 180.25181 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2007 0.0005 5 6 4.2734 -0.0002 0.0016 6 8 5.6325 -0.0001 0.0016 7 6 6.2812 -1.2734 0.0033 8 6 7.7980 -1.0730 0.0024 9 6 8.4925 -2.4363 0.0036 10 6 9.9866 -2.2388 0.0033 11 8 10.4502 -1.1181 0.0018 12 7 10.8076 -3.3077 0.0037 13 6 12.1924 -3.1267 -0.0919 14 6 12.9672 -4.0480 -0.7854 15 6 14.3317 -3.8668 -0.8838 16 6 14.9319 -2.7687 -0.2808 17 8 16.2751 -2.5934 -0.3732 18 6 16.8084 -1.5714 0.3258 19 1 16.1644 -0.8875 0.8586 20 6 18.1834 -1.3983 0.3605 21 7 18.9679 -2.2318 -0.2883 22 14 18.9224 0.0174 1.3296 23 1 18.5405 -0.1086 2.7591 24 1 20.4020 -0.0187 1.2080 25 1 18.4124 1.3044 0.7925 26 6 14.1579 -1.8503 0.4171 27 6 12.7928 -2.0291 0.5118 28 6 3.5786 -1.2009 -0.0032 29 6 2.1971 -1.1982 0.0016 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6559 2.1326 -0.0007 34 1 4.1173 2.1368 0.0001 35 1 5.9883 -1.8293 0.8939 36 1 5.9883 -1.8316 -0.8860 37 1 8.0906 -0.5173 -0.8884 38 1 8.0912 -0.5147 0.8915 39 1 8.2000 -2.9923 0.8943 40 1 8.1993 -2.9943 -0.8856 41 1 10.4388 -4.2025 0.0702 42 1 12.5010 -4.9037 -1.2511 43 1 14.9336 -4.5812 -1.4258 44 1 19.9301 -2.1109 -0.2637 45 1 14.6246 -0.9969 0.8862 46 1 12.1911 -1.3151 1.0548 47 1 4.1172 -2.1369 -0.0069 48 1 1.6557 -2.1326 0.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = -58.362962 kcal Electronic energy + Delta-G solvation = -28473.746394 eV Core-core repulsion = 24266.472872 eV Total energy + Delta-G solvation = -4207.273523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.55691 -40.16515 -38.72365 -38.13349 -36.59277 -34.19629 -33.98115 -32.26189 -32.13718 -31.41761 -30.21526 -28.81878 -27.32573 -26.29984 -25.24322 -23.72418 -22.54708 -22.07993 -21.46174 -21.10634 -20.04489 -18.61244 -18.07092 -17.55961 -16.92549 -16.77848 -16.34571 -16.13266 -15.70979 -15.49083 -14.77079 -14.53871 -14.42549 -14.29159 -14.08993 -13.88658 -13.72490 -13.63119 -13.51716 -13.42030 -12.90530 -12.69767 -12.56576 -12.50121 -12.33390 -11.90343 -11.79218 -11.73766 -11.59376 -11.53434 -11.46173 -11.09521 -11.00366 -10.88822 -10.76541 -10.44855 -9.74911 -9.69352 -9.40053 -9.18007 -8.69829 -8.41297 -8.21554 -6.95219 -6.44277 -4.02060 0.94502 1.03380 2.06075 2.20503 2.69334 2.82432 3.15523 3.16635 3.18887 3.35664 3.36382 3.98412 4.33327 4.45126 4.46484 4.51836 4.55392 4.57781 4.64204 4.81769 4.90801 4.95358 4.96200 5.02882 5.10339 5.16702 5.19651 5.25086 5.26434 5.32597 5.50714 5.64939 5.66227 5.72728 5.74697 5.88544 5.94638 5.99218 6.13199 6.17231 6.21505 6.33049 6.40992 6.71761 6.84552 6.99618 7.07872 7.08677 7.30068 7.43627 7.66164 7.77628 8.00710 8.33792 9.01422 9.70366 10.73526 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.024694 B = 0.001298 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.593124 B =21566.176409 C =22552.219483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.081 4.081 4 C -0.149 4.149 5 C 0.128 3.872 6 O -0.312 6.312 7 C 0.061 3.939 8 C -0.105 4.105 9 C -0.135 4.135 10 C 0.504 3.496 11 O -0.524 6.524 12 N -0.661 5.661 13 C 0.030 3.970 14 C -0.093 4.093 15 C -0.179 4.179 16 C 0.147 3.853 17 O -0.176 6.176 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.221 4.221 27 C -0.064 4.064 28 C -0.206 4.206 29 C -0.081 4.081 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.402 0.598 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.270 0.730 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.986 -0.998 1.243 34.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.099 4.099 4 C -0.168 4.168 5 C 0.082 3.918 6 O -0.226 6.226 7 C -0.014 4.014 8 C -0.143 4.143 9 C -0.175 4.175 10 C 0.291 3.709 11 O -0.400 6.400 12 N -0.306 5.306 13 C -0.062 4.062 14 C -0.113 4.113 15 C -0.198 4.198 16 C 0.093 3.907 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.241 4.241 27 C -0.083 4.083 28 C -0.225 4.225 29 C -0.099 4.099 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.236 0.764 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -33.093 -0.175 1.064 33.110 hybrid contribution 0.160 -0.072 0.484 0.515 sum -32.933 -0.247 1.548 32.970 Atomic orbital electron populations 1.20721 0.91098 1.02631 1.02155 1.19841 0.96239 0.93076 1.03798 1.20864 0.92981 0.97825 0.98259 1.20480 0.93795 0.96504 1.06015 1.19042 0.82459 0.94169 0.96090 1.86090 1.16137 1.32017 1.88337 1.22844 0.93259 0.83946 1.01393 1.21234 0.90598 0.96765 1.05697 1.21497 0.92171 0.99135 1.04688 1.20538 0.88685 0.84917 0.76743 1.90733 1.77334 1.23769 1.48125 1.43217 1.05242 1.09213 1.72888 1.17266 0.81487 1.00638 1.06788 1.20353 0.93136 0.98954 0.98840 1.19992 0.93701 0.98999 1.07147 1.19416 0.85289 0.92834 0.93211 1.83971 1.15076 1.48045 1.60859 1.21296 0.90891 1.05240 1.29363 0.89056 1.25274 0.94998 0.98719 0.97422 1.70035 1.04658 1.35661 1.39435 0.85786 0.78140 0.80006 0.79569 1.19474 1.20264 1.19442 1.21112 0.93374 1.02525 1.07073 1.20851 0.93915 0.96484 0.97097 1.21265 0.95376 0.97136 1.08708 1.20835 0.93296 0.97712 0.98087 0.91432 0.91741 0.91670 0.85414 0.85081 0.91882 0.91886 0.89743 0.89768 0.88617 0.88537 0.76412 0.86756 0.86058 0.91968 0.85203 0.85729 0.85410 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.01 36.01 0.36 -0.14 16 2 C -0.13 -0.90 5.88 -104.60 -0.62 -1.52 16 3 C -0.08 -0.59 9.69 -39.60 -0.38 -0.98 16 4 C -0.15 -1.31 9.99 -39.43 -0.39 -1.70 16 5 C 0.13 1.22 6.69 -39.22 -0.26 0.95 16 6 O -0.31 -3.22 10.14 -19.44 -0.20 -3.41 16 7 C 0.06 0.46 4.74 37.16 0.18 0.63 16 8 C -0.11 -0.95 4.87 -26.73 -0.13 -1.08 16 9 C -0.13 -1.03 5.70 -27.88 -0.16 -1.19 16 10 C 0.50 6.57 7.67 -10.98 -0.08 6.48 16 11 O -0.52 -9.27 13.42 5.55 0.07 -9.19 16 12 N -0.66 -8.46 5.34 -9.82 -0.05 -8.51 16 13 C 0.03 0.53 6.30 -83.63 -0.53 0.01 16 14 C -0.09 -1.60 9.96 -39.42 -0.39 -1.99 16 15 C -0.18 -3.71 9.98 -39.42 -0.39 -4.10 16 16 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 17 O -0.18 -5.06 9.75 0.01 0.00 -5.06 16 18 C -0.39 -11.07 9.48 30.88 0.29 -10.78 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -25.37 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.22 -5.02 9.16 -39.42 -0.36 -5.38 16 27 C -0.06 -1.28 8.69 -39.42 -0.34 -1.63 16 28 C -0.21 -1.63 9.04 -39.43 -0.36 -1.98 16 29 C -0.08 -0.58 9.69 -39.60 -0.38 -0.96 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.06 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 36 H 0.06 0.38 7.65 -51.92 -0.40 -0.01 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 3.48 8.82 -40.82 -0.36 3.12 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.13 2.97 5.63 -52.49 -0.30 2.68 16 46 H 0.12 2.49 6.23 -52.48 -0.33 2.16 16 47 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 405.78 15.07 6.12 6.12 Total: -1.00 -34.85 405.78 -9.22 -44.07 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.58 Total: 5.89 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -4.31 Total: -21.02 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.71 Total: -33.13 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.12 Total: -17.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.85 -9.22 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.296 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds