Wall clock time and date at job start Tue Mar 31 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38266 * 119.94489 * 2 1 4 4 C 1.38147 * 120.05266 * 179.97438 * 3 2 1 5 5 C 1.38731 * 119.94270 * 359.97438 * 4 3 2 6 6 O 1.35904 * 120.04911 * 179.97438 * 5 4 3 7 7 C 1.42904 * 116.99736 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47113 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46913 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46804 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00203 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99730 * 180.02562 * 10 9 8 13 13 C 1.39992 * 119.99945 * 175.48800 * 12 10 9 14 14 C 1.38924 * 120.00051 * 214.84938 * 13 12 10 15 15 C 1.37998 * 119.99430 * 179.76207 * 14 13 12 16 16 C 1.38911 * 120.00580 * 0.48903 * 15 14 13 17 17 O 1.35779 * 120.00003 * 179.74294 * 16 15 14 18 18 C 1.34812 * 116.99857 * 185.36503 * 17 16 15 19 19 H 1.07999 * 119.99887 * 354.96331 * 18 17 16 20 20 C 1.38627 * 120.00084 * 174.96625 * 18 17 16 21 21 N 1.31571 * 119.99933 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47239 * 59.99879 * 22 20 18 24 24 H 1.48505 * 109.46656 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47006 * 299.99375 * 22 20 18 26 26 C 1.38904 * 119.99984 * 359.76282 * 16 15 14 27 27 C 1.38006 * 120.00153 * 0.02562 * 26 16 15 28 28 C 1.38728 * 119.89079 * 0.25405 * 5 4 3 29 29 C 1.38146 * 119.94573 * 359.49187 * 28 5 4 30 30 H 1.09002 * 109.47028 * 89.99830 * 1 2 3 31 31 H 1.08996 * 109.47419 * 210.00060 * 1 2 3 32 32 H 1.09002 * 109.46841 * 329.99821 * 1 2 3 33 33 H 1.07998 * 119.97548 * 359.95765 * 3 2 1 34 34 H 1.07998 * 120.02365 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47733 * 300.00632 * 7 6 5 36 36 H 1.09008 * 109.46585 * 60.00294 * 7 6 5 37 37 H 1.08992 * 109.47413 * 300.00430 * 8 7 6 38 38 H 1.09006 * 109.46590 * 60.00609 * 8 7 6 39 39 H 1.09000 * 109.46987 * 299.99967 * 9 8 7 40 40 H 1.08998 * 109.47451 * 60.00386 * 9 8 7 41 41 H 0.97005 * 120.00152 * 355.49251 * 12 10 9 42 42 H 1.07996 * 120.00022 * 0.02562 * 14 13 12 43 43 H 1.08004 * 119.99924 * 180.20957 * 15 14 13 44 44 H 0.97005 * 120.00282 * 180.02562 * 21 20 18 45 45 H 1.07996 * 119.99842 * 179.97438 * 26 16 15 46 46 H 1.08006 * 119.99935 * 179.97438 * 27 26 16 47 47 H 1.08000 * 120.02624 * 179.72079 * 28 5 4 48 48 H 1.07994 * 119.97543 * 180.25181 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2007 0.0005 5 6 4.2734 -0.0002 0.0016 6 8 5.6325 -0.0001 0.0016 7 6 6.2812 -1.2734 0.0033 8 6 7.7980 -1.0730 0.0024 9 6 8.4925 -2.4363 0.0036 10 6 9.9866 -2.2388 0.0033 11 8 10.4502 -1.1181 0.0018 12 7 10.8076 -3.3077 0.0037 13 6 12.1924 -3.1267 -0.0919 14 6 12.9672 -4.0480 -0.7854 15 6 14.3317 -3.8668 -0.8838 16 6 14.9319 -2.7687 -0.2808 17 8 16.2751 -2.5934 -0.3732 18 6 16.8084 -1.5714 0.3258 19 1 16.1644 -0.8875 0.8586 20 6 18.1834 -1.3983 0.3605 21 7 18.9679 -2.2318 -0.2883 22 14 18.9224 0.0174 1.3296 23 1 18.5405 -0.1086 2.7591 24 1 20.4020 -0.0187 1.2080 25 1 18.4124 1.3044 0.7925 26 6 14.1579 -1.8503 0.4171 27 6 12.7928 -2.0291 0.5118 28 6 3.5786 -1.2009 -0.0032 29 6 2.1971 -1.1982 0.0016 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6559 2.1326 -0.0007 34 1 4.1173 2.1368 0.0001 35 1 5.9883 -1.8293 0.8939 36 1 5.9883 -1.8316 -0.8860 37 1 8.0906 -0.5173 -0.8884 38 1 8.0912 -0.5147 0.8915 39 1 8.2000 -2.9923 0.8943 40 1 8.1993 -2.9943 -0.8856 41 1 10.4388 -4.2025 0.0702 42 1 12.5010 -4.9037 -1.2511 43 1 14.9336 -4.5812 -1.4258 44 1 19.9301 -2.1109 -0.2637 45 1 14.6246 -0.9969 0.8862 46 1 12.1911 -1.3151 1.0548 47 1 4.1172 -2.1369 -0.0069 48 1 1.6557 -2.1326 0.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023150351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:50 Heat of formation + Delta-G solvation = -79.892850 kcal Electronic energy + Delta-G solvation = -28474.680000 eV Core-core repulsion = 24266.472872 eV Total energy + Delta-G solvation = -4208.207128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.52433 -41.07885 -40.35852 -38.75070 -38.19140 -35.38915 -34.94875 -34.16521 -32.73207 -31.95240 -31.86415 -30.06374 -28.33274 -27.27509 -26.76862 -24.50879 -23.91206 -23.22261 -22.39321 -21.90066 -21.20097 -19.95834 -19.29929 -19.02156 -18.03847 -17.96126 -17.42179 -16.83132 -16.54613 -16.28847 -16.23177 -15.93519 -15.53633 -15.45623 -15.25122 -15.03661 -14.79351 -14.65532 -14.40215 -14.34516 -14.24757 -14.04759 -13.58402 -13.39030 -13.21689 -13.07814 -12.93180 -12.90568 -12.69346 -12.45939 -12.40745 -12.37483 -12.15816 -12.10924 -11.63524 -11.48119 -11.42060 -11.13091 -10.80037 -10.51073 -9.94765 -9.84576 -8.97901 -8.61854 -8.48041 -6.15115 0.40004 0.46993 0.50590 0.55430 1.33780 1.42964 1.49440 1.67896 1.97881 2.17113 2.43678 2.80671 2.81260 3.14025 3.50892 3.63178 3.86442 3.92631 3.95652 4.03296 4.07988 4.11198 4.12089 4.24972 4.37934 4.45217 4.45576 4.47476 4.48029 4.63598 4.67738 4.69931 4.80285 4.85489 4.89386 5.04866 5.07018 5.11787 5.12990 5.16854 5.25428 5.34997 5.39424 5.42168 5.45121 5.60038 5.69564 5.70780 5.90729 6.00992 6.17090 6.50256 6.58316 6.96492 7.29138 7.75682 8.74449 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.024694 B = 0.001298 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.593124 B =21566.176409 C =22552.219483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.089 4.089 4 C -0.171 4.171 5 C 0.104 3.896 6 O -0.340 6.340 7 C 0.062 3.938 8 C -0.103 4.103 9 C -0.118 4.118 10 C 0.500 3.500 11 O -0.576 6.576 12 N -0.649 5.649 13 C 0.060 3.940 14 C -0.076 4.076 15 C -0.181 4.181 16 C 0.105 3.895 17 O -0.228 6.228 18 C -0.417 4.417 19 H 0.096 0.904 20 C -0.018 4.018 21 N -0.917 5.917 22 Si 1.015 2.985 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.261 1.261 26 C -0.231 4.231 27 C -0.078 4.078 28 C -0.209 4.209 29 C -0.088 4.088 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.429 0.571 42 H 0.170 0.830 43 H 0.129 0.871 44 H 0.274 0.726 45 H 0.114 0.886 46 H 0.124 0.876 47 H 0.148 0.852 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.254 -2.916 1.517 38.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.107 4.107 4 C -0.190 4.190 5 C 0.059 3.941 6 O -0.255 6.255 7 C -0.013 4.013 8 C -0.141 4.141 9 C -0.158 4.158 10 C 0.290 3.710 11 O -0.454 6.454 12 N -0.296 5.296 13 C -0.034 4.034 14 C -0.096 4.096 15 C -0.201 4.201 16 C 0.055 3.945 17 O -0.134 6.134 18 C -0.493 4.493 19 H 0.113 0.887 20 C -0.216 4.216 21 N -0.555 5.555 22 Si 0.834 3.166 23 H -0.183 1.183 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.251 4.251 27 C -0.098 4.098 28 C -0.228 4.228 29 C -0.106 4.106 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.268 0.732 42 H 0.187 0.813 43 H 0.147 0.853 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.142 0.858 47 H 0.166 0.834 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -37.462 -2.143 1.343 37.547 hybrid contribution 1.041 0.444 0.358 1.187 sum -36.422 -1.699 1.701 36.501 Atomic orbital electron populations 1.20766 0.89360 1.03521 1.02848 1.20213 0.97635 0.92934 1.02764 1.21125 0.92544 0.99030 0.97963 1.20677 0.94693 0.96571 1.07026 1.19274 0.82259 0.95081 0.97486 1.86044 1.16871 1.33720 1.88820 1.22921 0.91633 0.83414 1.03313 1.21161 0.92243 0.97339 1.03387 1.21512 0.87129 0.98839 1.08274 1.21598 0.90894 0.83832 0.74658 1.90737 1.78596 1.26018 1.50088 1.43184 1.02940 1.11008 1.72459 1.17433 0.84038 0.98533 1.03372 1.20810 0.91438 1.00016 0.97352 1.20350 0.95501 0.97878 1.06329 1.19957 0.84410 0.94870 0.95312 1.83931 1.17210 1.49198 1.63099 1.21726 0.91732 1.05826 1.29979 0.88672 1.26500 0.95004 1.01677 0.98402 1.70166 1.05007 1.38316 1.42040 0.84709 0.77456 0.76235 0.78208 1.18263 1.19158 1.18555 1.21104 0.94593 1.02094 1.07342 1.20938 0.92788 0.97997 0.98086 1.21515 0.95884 0.97240 1.08139 1.21191 0.93258 0.98745 0.97419 0.90736 0.90713 0.90993 0.83783 0.85534 0.89810 0.89879 0.92271 0.92117 0.84747 0.84807 0.73200 0.81299 0.85344 0.91736 0.86798 0.85776 0.83446 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 71.24 0.71 -0.01 16 2 C -0.14 -1.63 5.88 -19.85 -0.12 -1.74 16 3 C -0.09 -1.22 9.69 22.25 0.22 -1.00 16 4 C -0.17 -3.01 9.99 22.37 0.22 -2.78 16 5 C 0.10 1.90 6.69 22.50 0.15 2.05 16 6 O -0.34 -6.82 10.14 -92.46 -0.94 -7.75 16 7 C 0.06 0.77 4.74 71.98 0.34 1.11 16 8 C -0.10 -1.68 4.87 30.59 0.15 -1.54 16 9 C -0.12 -1.27 5.70 29.85 0.17 -1.10 16 10 C 0.50 11.48 7.67 87.66 0.67 12.15 16 11 O -0.58 -19.94 13.42 -3.04 -0.04 -19.98 16 12 N -0.65 -13.78 5.34 -303.37 -1.62 -15.40 16 13 C 0.06 1.94 6.30 38.16 0.24 2.18 16 14 C -0.08 -2.37 9.96 22.38 0.22 -2.15 16 15 C -0.18 -7.43 9.98 22.37 0.22 -7.21 16 16 C 0.11 5.35 6.65 22.59 0.15 5.50 16 17 O -0.23 -13.94 9.75 -22.87 -0.22 -14.17 16 18 C -0.42 -25.03 9.48 67.91 0.64 -24.39 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 20 C -0.02 -1.04 5.49 84.82 0.47 -0.57 16 21 N -0.92 -56.77 13.67 21.61 0.30 -56.48 16 22 Si 1.01 44.12 29.55 68.60 2.03 46.15 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.23 -11.00 9.16 22.37 0.20 -10.79 16 27 C -0.08 -3.15 8.69 22.38 0.19 -2.95 16 28 C -0.21 -2.83 9.04 22.37 0.20 -2.63 16 29 C -0.09 -1.03 9.69 22.25 0.22 -0.81 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.35 8.08 -2.39 -0.02 0.33 16 32 H 0.07 0.38 8.08 -2.39 -0.02 0.37 16 33 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.08 0.69 7.68 -2.39 -0.02 0.67 16 36 H 0.08 0.70 7.65 -2.38 -0.02 0.68 16 37 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 39 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.43 4.78 8.82 -92.70 -0.82 3.97 16 42 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 44 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 45 H 0.11 5.62 5.63 -2.91 -0.02 5.61 16 46 H 0.12 5.02 6.23 -2.91 -0.02 5.01 16 47 H 0.15 1.25 6.30 -2.91 -0.02 1.24 16 48 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -84.87 405.78 4.96 -79.91 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.17 Total: 24.41 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 5.28 Total: -36.69 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.32 Total: -71.88 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.20 Total: -41.90 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -84.87 4.96 -79.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.014 kcal (2) G-P(sol) polarization free energy of solvation -84.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds