Wall clock time and date at job start Tue Mar 31 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34743 * 116.99977 * 2 1 4 4 O 1.21509 * 120.00147 * 0.02562 * 3 2 1 5 5 C 1.47468 * 120.00326 * 179.97438 * 3 2 1 6 6 C 1.39783 * 120.09716 * 180.02562 * 5 3 2 7 7 C 1.37678 * 119.91039 * 180.02562 * 6 5 3 8 8 C 1.39012 * 120.09123 * 0.02562 * 7 6 5 9 9 O 1.35704 * 119.90995 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00171 * 184.98618 * 9 8 7 11 11 C 1.50699 * 109.47341 * 184.57025 * 10 9 8 12 12 O 1.21280 * 119.99782 * 4.96989 * 11 10 9 13 13 N 1.34778 * 120.00637 * 184.96902 * 11 10 9 14 14 C 1.37140 * 119.99588 * 4.31157 * 13 11 10 15 15 H 1.08006 * 119.99924 * 59.07553 * 14 13 11 16 16 C 1.38888 * 120.00100 * 239.07749 * 14 13 11 17 17 N 1.31416 * 120.00120 * 357.02334 * 16 14 13 18 18 Si 1.86797 * 119.99868 * 177.02416 * 16 14 13 19 19 H 1.48502 * 109.47260 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46949 * 120.00064 * 18 16 14 21 21 H 1.48501 * 109.47231 * 239.99961 * 18 16 14 22 22 C 1.39782 * 120.00311 * 184.31246 * 13 11 10 23 23 C 1.38962 * 120.07964 * 174.20946 * 22 13 11 24 24 C 1.38073 * 119.92452 * 179.97438 * 23 22 13 25 25 C 1.38315 * 120.07958 * 359.97438 * 24 23 22 26 26 C 1.38307 * 120.15229 * 0.04516 * 25 24 23 27 27 C 1.38081 * 120.08226 * 359.95498 * 26 25 24 28 28 C 1.39013 * 120.18772 * 0.27494 * 8 7 6 29 29 C 1.37681 * 120.09005 * 359.44617 * 28 8 7 30 30 H 1.09005 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47270 * 299.99713 * 1 2 3 32 32 H 1.09000 * 109.46807 * 60.00031 * 1 2 3 33 33 H 1.08001 * 120.04590 * 0.02562 * 6 5 3 34 34 H 1.07999 * 119.95658 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46995 * 64.57157 * 10 9 8 36 36 H 1.09005 * 109.47397 * 304.57476 * 10 9 8 37 37 H 0.97001 * 120.00226 * 184.99210 * 17 16 14 38 38 H 1.08007 * 120.03544 * 359.70426 * 23 22 13 39 39 H 1.08003 * 119.96330 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.92150 * 179.97438 * 25 24 23 41 41 H 1.07998 * 119.95780 * 179.97438 * 26 25 24 42 42 H 1.07994 * 120.04529 * 179.97438 * 27 26 25 43 43 H 1.07995 * 119.95715 * 179.72836 * 28 8 7 44 44 H 1.08000 * 120.04863 * 180.25076 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1731 2.5223 0.0011 7 6 5.5482 2.5899 0.0011 8 6 6.3034 1.4229 0.0000 9 8 7.6586 1.4938 -0.0005 10 6 8.3727 0.2612 -0.1123 11 6 9.8511 0.5236 0.0171 12 8 10.2483 1.6395 0.2777 13 7 10.7318 -0.4816 -0.1569 14 6 10.2894 -1.7224 -0.5382 15 1 9.7470 -1.8412 -1.4646 16 6 10.5389 -2.8263 0.2668 17 7 11.2491 -2.6921 1.3644 18 14 9.8651 -4.5019 -0.2106 19 1 9.1040 -4.3858 -1.4804 20 1 10.9899 -5.4543 -0.3923 21 1 8.9652 -4.9974 0.8618 22 6 12.0961 -0.2595 0.0513 23 6 12.9917 -1.3203 -0.0096 24 6 14.3386 -1.0972 0.1961 25 6 14.7970 0.1804 0.4620 26 6 13.9085 1.2385 0.5238 27 6 12.5600 1.0227 0.3191 28 6 5.6744 0.1832 -0.0068 29 6 4.2997 0.1066 -0.0010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.5870 3.4295 0.0015 34 1 6.0408 3.5510 0.0011 35 1 8.1675 -0.1909 -1.0826 36 1 8.0534 -0.4168 0.6793 37 1 11.4847 -3.4738 1.8883 38 1 12.6339 -2.3188 -0.2133 39 1 15.0353 -1.9211 0.1484 40 1 15.8511 0.3520 0.6229 41 1 14.2697 2.2347 0.7321 42 1 11.8667 1.8493 0.3679 43 1 6.2648 -0.7211 -0.0121 44 1 3.8117 -0.8568 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023866601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:47 Heat of formation + Delta-G solvation = -72.761696 kcal Electronic energy + Delta-G solvation = -30158.584437 eV Core-core repulsion = 25814.853444 eV Total energy + Delta-G solvation = -4343.730993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.75686 -40.16431 -39.48859 -37.63246 -36.89512 -36.40784 -35.16921 -32.14654 -31.47098 -30.73329 -29.73041 -29.54051 -27.96966 -27.15650 -25.31188 -23.73633 -22.96874 -21.83557 -21.29843 -20.81639 -19.62448 -18.43914 -17.95917 -17.86189 -17.06949 -16.51261 -16.28435 -15.95825 -15.70289 -15.53784 -15.18014 -14.85576 -14.46771 -14.11041 -14.03440 -13.74993 -13.58133 -13.50148 -13.13308 -12.99257 -12.76215 -12.55082 -12.46978 -12.30361 -12.13402 -11.94557 -11.64318 -11.45250 -11.19520 -11.03475 -11.01507 -10.88225 -10.78050 -10.68066 -10.55495 -10.08923 -9.32402 -9.21411 -8.89035 -8.34546 -8.28746 -7.83629 -7.04362 -6.39870 -4.78702 0.66784 1.23199 2.32900 2.44140 2.53221 2.53390 2.91419 2.95961 3.03808 3.05569 3.53333 3.68062 3.83351 4.44422 4.58849 4.61616 4.67966 4.80488 4.86100 4.93382 5.04528 5.06390 5.22765 5.28218 5.42890 5.51752 5.57484 5.66458 5.84454 5.86660 5.94861 6.00072 6.12631 6.15153 6.18638 6.27907 6.52791 6.66517 6.69903 6.83078 7.07443 7.09927 7.36020 7.46419 7.55685 7.59803 7.64299 7.70112 7.92900 8.33193 8.66040 9.03980 9.41597 10.30086 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002445 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.883207 B =11450.876395 C =13279.054205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.516 3.484 4 O -0.516 6.516 5 C -0.184 4.184 6 C -0.013 4.013 7 C -0.168 4.168 8 C 0.183 3.817 9 O -0.287 6.287 10 C 0.058 3.942 11 C 0.498 3.502 12 O -0.545 6.545 13 N -0.379 5.379 14 C -0.381 4.381 15 H 0.097 0.903 16 C 0.056 3.944 17 N -0.837 5.837 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.178 3.822 23 C -0.090 4.090 24 C -0.128 4.128 25 C -0.168 4.168 26 C -0.124 4.124 27 C -0.190 4.190 28 C -0.227 4.227 29 C -0.016 4.016 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.277 0.723 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.174 0.826 43 H 0.144 0.856 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 0.521 -2.618 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.362 3.638 4 O -0.406 6.406 5 C -0.186 4.186 6 C -0.031 4.031 7 C -0.186 4.186 8 C 0.135 3.865 9 O -0.197 6.197 10 C -0.019 4.019 11 C 0.288 3.712 12 O -0.428 6.428 13 N -0.089 5.089 14 C -0.508 4.508 15 H 0.114 0.886 16 C -0.155 4.155 17 N -0.469 5.469 18 Si 0.743 3.257 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.201 1.201 22 C 0.082 3.918 23 C -0.110 4.110 24 C -0.147 4.147 25 C -0.188 4.188 26 C -0.143 4.143 27 C -0.210 4.210 28 C -0.246 4.246 29 C -0.034 4.034 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.190 0.810 43 H 0.162 0.838 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.082 1.391 -2.270 12.372 hybrid contribution -0.314 -1.440 0.032 1.474 sum -12.396 -0.049 -2.238 12.597 Atomic orbital electron populations 1.23257 0.76171 1.03667 1.02546 1.86557 1.23412 1.32876 1.84507 1.21144 0.89117 0.81254 0.72272 1.90821 1.66916 1.36012 1.46846 1.18891 0.88729 0.95016 1.15923 1.20982 0.93309 0.96740 0.92102 1.20399 0.92454 0.97581 1.08200 1.19513 0.83149 0.94005 0.89871 1.86110 1.14391 1.33461 1.85779 1.22483 0.91084 0.84244 1.04104 1.20176 0.87147 0.85008 0.78858 1.90252 1.78220 1.23966 1.50318 1.40779 1.02133 1.09667 1.56284 1.19453 1.41374 0.83083 1.06885 0.88591 1.25728 0.95019 1.00747 0.94001 1.70037 1.32188 1.31606 1.13043 0.85999 0.79418 0.81189 0.79139 1.18690 1.20009 1.20059 1.18275 0.83842 0.92976 0.96686 1.21082 0.91191 0.99236 0.99522 1.20785 0.95322 0.96082 1.02547 1.20821 0.98281 0.93657 1.05997 1.20851 0.93603 0.97753 1.02048 1.22767 0.96712 0.98533 1.02975 1.21433 0.95610 0.97602 1.09961 1.21221 0.92931 0.97932 0.91337 0.88049 0.91891 0.91900 0.84044 0.83961 0.88748 0.88400 0.91238 0.84535 0.87751 0.88163 0.87689 0.81022 0.83807 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.88 9.81 -40.61 -0.40 -4.28 16 3 C 0.52 6.54 7.89 34.49 0.27 6.81 16 4 O -0.52 -7.54 16.13 -19.27 -0.31 -7.85 16 5 C -0.18 -2.28 5.87 -104.98 -0.62 -2.90 16 6 C -0.01 -0.16 9.58 -39.21 -0.38 -0.53 16 7 C -0.17 -2.16 9.97 -39.50 -0.39 -2.56 16 8 C 0.18 2.66 6.69 -39.01 -0.26 2.40 16 9 O -0.29 -5.03 9.66 -38.68 -0.37 -5.40 16 10 C 0.06 1.04 4.18 36.01 0.15 1.19 16 11 C 0.50 11.19 7.65 -10.99 -0.08 11.10 16 12 O -0.55 -13.27 12.89 -14.30 -0.18 -13.46 16 13 N -0.38 -8.95 2.64 -58.98 -0.16 -9.10 16 14 C -0.38 -8.54 7.48 -14.94 -0.11 -8.65 16 15 H 0.10 2.01 7.66 -52.48 -0.40 1.61 16 16 C 0.06 1.24 4.03 -17.49 -0.07 1.17 16 17 N -0.84 -20.19 10.71 55.49 0.59 -19.60 16 18 Si 0.92 17.01 29.56 -169.99 -5.02 11.99 16 19 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 21 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 22 C 0.18 4.31 6.04 -83.69 -0.51 3.81 16 23 C -0.09 -2.07 7.72 -39.37 -0.30 -2.38 16 24 C -0.13 -2.63 10.04 -39.61 -0.40 -3.02 16 25 C -0.17 -3.27 10.04 -39.53 -0.40 -3.67 16 26 C -0.12 -2.53 10.04 -39.61 -0.40 -2.93 16 27 C -0.19 -4.42 9.05 -39.37 -0.36 -4.78 16 28 C -0.23 -2.92 9.05 -39.50 -0.36 -3.28 16 29 C -0.02 -0.19 9.61 -39.20 -0.38 -0.56 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.14 1.52 7.64 -52.49 -0.40 1.12 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.09 1.49 7.69 -51.93 -0.40 1.09 16 36 H 0.10 1.66 7.15 -51.93 -0.37 1.29 16 37 H 0.28 6.31 8.32 -40.82 -0.34 5.97 16 38 H 0.14 3.25 5.11 -52.48 -0.27 2.98 16 39 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.17 4.16 4.52 -56.32 -0.25 3.90 16 43 H 0.14 1.72 6.25 -52.49 -0.33 1.39 16 44 H 0.14 1.35 7.60 -52.49 -0.40 0.95 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -28.89 376.82 -8.61 -37.50 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -4.92 Total: 11.95 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.52 Total: -7.42 kcal Atomic # 7 Polarization: -29.14 SS G_CDS: 0.44 Total: -28.70 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.27 Total: -30.99 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.02 Total: 11.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.89 -8.61 -37.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023866601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.266 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds