Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31254 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48507 * 109.47098 * 240.00243 * 3 2 1 5 5 H 1.48499 * 109.47105 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47330 * 120.00161 * 3 2 1 7 7 C 1.39076 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99773 * 160.40090 * 7 2 1 9 9 N 1.37102 * 120.00347 * 340.40353 * 7 2 1 10 10 C 1.35344 * 119.71261 * 318.87804 * 9 7 2 11 11 O 1.21714 * 121.29040 * 359.97438 * 10 9 7 12 12 C 1.46965 * 117.42470 * 179.97438 * 10 9 7 13 13 C 1.39369 * 121.90659 * 179.97438 * 12 10 9 14 14 C 1.37795 * 119.51668 * 180.02562 * 13 12 10 15 15 C 1.38867 * 120.56943 * 0.02562 * 14 13 12 16 16 C 1.37708 * 120.83321 * 359.97438 * 15 14 13 17 17 C 1.39635 * 119.69015 * 359.97438 * 16 15 14 18 18 N 1.35634 * 121.62533 * 179.97438 * 17 16 15 19 19 C 1.29825 * 121.62853 * 180.02562 * 18 17 16 20 20 C 1.50699 * 118.35304 * 180.02562 * 19 18 17 21 21 N 1.46506 * 109.46720 * 359.97438 * 20 19 18 22 22 C 1.39745 * 119.99750 * 179.97438 * 21 20 19 23 23 C 1.38892 * 120.06004 * 359.72779 * 22 21 20 24 24 C 1.38116 * 119.93763 * 179.72282 * 23 22 21 25 25 C 1.38378 * 120.05748 * 0.55161 * 24 23 22 26 26 Cl 1.73603 * 119.93885 * 179.70075 * 25 24 23 27 27 C 1.38383 * 120.12384 * 359.72563 * 25 24 23 28 28 C 1.38108 * 120.06507 * 359.97438 * 27 25 24 29 29 H 0.97003 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.23774 * 359.97438 * 13 12 10 31 31 H 1.07999 * 119.70690 * 179.97438 * 14 13 12 32 32 H 1.08001 * 119.58202 * 179.69640 * 15 14 13 33 33 H 1.08002 * 120.15677 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.47187 * 119.99937 * 20 19 18 35 35 H 1.08998 * 109.47073 * 240.00121 * 20 19 18 36 36 H 0.96992 * 119.99944 * 0.02562 * 21 20 19 37 37 H 1.08001 * 120.03611 * 359.97166 * 23 22 21 38 38 H 1.07994 * 119.97301 * 180.25266 * 24 23 22 39 39 H 1.08003 * 119.97177 * 179.97438 * 27 25 24 40 40 H 1.07996 * 120.03231 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 3.1004 1.6963 -1.2126 5 1 1.2817 2.7464 -0.0006 6 1 3.1004 1.6963 1.2125 7 6 2.0079 -1.2045 -0.0005 8 1 3.0410 -1.2314 -0.3143 9 7 1.3819 -2.3576 0.3972 10 6 0.5555 -2.3370 1.4688 11 8 0.3542 -1.3112 2.0923 12 6 -0.0894 -3.6012 1.8507 13 6 -0.9567 -3.6866 2.9383 14 6 -1.5340 -4.8976 3.2528 15 6 -1.2581 -6.0291 2.4965 16 6 -0.4041 -5.9663 1.4181 17 6 0.1927 -4.7505 1.0784 18 7 1.0401 -4.6441 0.0247 19 6 1.5954 -3.5138 -0.2910 20 6 2.5248 -3.4795 -1.4767 21 7 2.6148 -4.8181 -2.0655 22 6 3.4226 -5.0362 -3.1847 23 6 4.1364 -3.9838 -3.7433 24 6 4.9385 -4.2034 -4.8460 25 6 5.0225 -5.4682 -5.4011 26 17 6.0257 -5.7392 -6.7918 27 6 4.3080 -6.5174 -4.8500 28 6 3.5091 -6.3048 -3.7437 29 1 -0.4850 0.8401 -0.0004 30 1 -1.1740 -2.8102 3.5307 31 1 -2.2062 -4.9673 4.0952 32 1 -1.7156 -6.9712 2.7603 33 1 -0.1969 -6.8533 0.8377 34 1 2.1405 -2.7805 -2.2195 35 1 3.5148 -3.1580 -1.1532 36 1 2.1130 -5.5526 -1.6789 37 1 4.0674 -2.9954 -3.3135 38 1 5.4969 -3.3864 -5.2783 39 1 4.3750 -7.5034 -5.2855 40 1 2.9514 -7.1239 -3.3143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024762936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = 44.621679 kcal Electronic energy + Delta-G solvation = -27805.527727 eV Core-core repulsion = 23804.055680 eV Total energy + Delta-G solvation = -4001.472047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.083 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68614 -39.34917 -37.77551 -36.92838 -36.31287 -34.76959 -33.93329 -32.07175 -31.02405 -30.56230 -30.24849 -28.33230 -26.33132 -25.90962 -23.24005 -23.01830 -22.05704 -21.49417 -20.69561 -18.92922 -18.18316 -17.55747 -17.00081 -16.24023 -15.79201 -15.52891 -15.18629 -14.90752 -14.52502 -14.16334 -14.01823 -13.98608 -13.85664 -13.73922 -13.40249 -13.17851 -13.15630 -12.44284 -12.38968 -11.99268 -11.93831 -11.87023 -11.45839 -11.37988 -11.36108 -11.20618 -11.11853 -10.93568 -10.65904 -10.65219 -9.74030 -9.67412 -9.16390 -9.08945 -8.97703 -8.51107 -8.49485 -7.26482 -7.19191 -6.84011 -4.69189 1.32791 1.41198 1.50732 1.52868 2.34199 2.95133 3.01442 3.06220 3.07913 3.39740 3.70206 3.82961 3.83938 4.19994 4.51565 4.65754 4.87731 4.96907 4.97183 5.22662 5.30562 5.38018 5.43259 5.49416 5.56163 5.68375 5.72759 5.81386 5.93790 5.98728 6.02930 6.17628 6.31887 6.34877 6.42659 6.53024 6.67186 6.74959 6.89881 6.94121 6.96938 7.32985 7.41666 7.44423 7.92083 8.01854 8.28300 8.53960 8.93504 9.32490 10.18149 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003152 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.868486 B = 8881.430861 C =11684.683794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.080 3.920 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.389 4.389 8 H 0.111 0.889 9 N -0.345 5.345 10 C 0.522 3.478 11 O -0.496 6.496 12 C -0.208 4.208 13 C -0.037 4.037 14 C -0.174 4.174 15 C -0.087 4.087 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.577 5.577 19 C 0.350 3.650 20 C 0.191 3.809 21 N -0.724 5.724 22 C 0.235 3.765 23 C -0.194 4.194 24 C -0.058 4.058 25 C -0.105 4.105 26 Cl -0.093 7.093 27 C -0.060 4.060 28 C -0.190 4.190 29 H 0.283 0.717 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.417 0.583 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 -9.444 -5.513 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.138 4.138 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.515 4.515 8 H 0.128 0.872 9 N -0.048 5.048 10 C 0.316 3.684 11 O -0.369 6.369 12 C -0.216 4.216 13 C -0.057 4.057 14 C -0.193 4.193 15 C -0.107 4.107 16 C -0.153 4.153 17 C 0.057 3.943 18 N -0.307 5.307 19 C 0.087 3.913 20 C 0.065 3.935 21 N -0.354 5.354 22 C 0.128 3.872 23 C -0.217 4.217 24 C -0.077 4.077 25 C -0.134 4.134 26 Cl -0.065 7.065 27 C -0.080 4.080 28 C -0.213 4.213 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.257 0.743 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.621 -9.114 -5.449 11.580 hybrid contribution -0.139 1.223 0.594 1.367 sum 4.482 -7.891 -4.855 10.292 Atomic orbital electron populations 1.69790 1.07271 1.29968 1.35163 1.25435 0.95022 1.00622 0.92735 0.85945 0.79436 0.79616 0.79507 1.19097 1.20331 1.18997 1.19629 0.97070 0.84076 1.50739 0.87173 1.42202 1.34145 1.08259 1.20178 1.18206 0.81568 0.88244 0.80377 1.90677 1.60582 1.33413 1.52224 1.20791 1.04958 0.94328 1.01526 1.20896 0.92855 0.97540 0.94363 1.20865 1.03723 0.92840 1.01909 1.20989 0.96992 0.97991 0.94742 1.20585 0.99707 0.96136 0.98881 1.18619 0.92645 0.92671 0.90375 1.67859 1.18532 1.23166 1.21104 1.22538 0.93898 0.83622 0.91209 1.19965 0.97254 0.84965 0.91340 1.44792 1.49470 1.11461 1.29682 1.17942 0.89263 0.93361 0.86649 1.20691 1.02350 0.99056 0.99603 1.20742 0.97118 0.95107 0.94735 1.20518 1.02678 0.95735 0.94457 1.98323 1.68984 1.96797 1.42403 1.20677 0.94618 0.97849 0.94820 1.20498 1.05288 0.95957 0.99555 0.90634 0.85749 0.86458 0.86354 0.85708 0.88620 0.89683 0.74321 0.84897 0.85420 0.85518 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.02 11.54 55.50 0.64 -20.38 16 2 C 0.08 1.95 4.36 -17.49 -0.08 1.88 16 3 Si 0.93 18.74 29.60 -169.99 -5.03 13.71 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.39 -9.18 8.24 -14.88 -0.12 -9.30 16 8 H 0.11 2.31 7.07 -52.48 -0.37 1.93 16 9 N -0.35 -8.21 2.68 -59.56 -0.16 -8.37 16 10 C 0.52 13.33 6.93 -12.47 -0.09 13.24 16 11 O -0.50 -13.95 14.28 5.18 0.07 -13.87 16 12 C -0.21 -4.66 5.89 -104.77 -0.62 -5.28 16 13 C -0.04 -0.73 9.68 -39.32 -0.38 -1.11 16 14 C -0.17 -2.78 10.02 -39.51 -0.40 -3.17 16 15 C -0.09 -1.30 10.00 -39.54 -0.40 -1.70 16 16 C -0.13 -2.23 10.03 -39.25 -0.39 -2.63 16 17 C 0.17 3.51 6.63 -84.49 -0.56 2.95 16 18 N -0.58 -11.41 8.56 -8.10 -0.07 -11.48 16 19 C 0.35 7.15 7.53 -154.88 -1.17 5.98 16 20 C 0.19 3.12 4.03 -5.19 -0.02 3.10 16 21 N -0.72 -10.47 5.69 -59.79 -0.34 -10.81 16 22 C 0.24 3.12 6.65 -83.76 -0.56 2.56 16 23 C -0.19 -2.47 9.31 -39.38 -0.37 -2.83 16 24 C -0.06 -0.69 9.82 -39.57 -0.39 -1.07 16 25 C -0.11 -1.25 6.32 -39.48 -0.25 -1.50 16 26 Cl -0.09 -1.04 28.95 -51.86 -1.50 -2.54 16 27 C -0.06 -0.68 9.82 -39.58 -0.39 -1.07 16 28 C -0.19 -2.26 9.90 -39.39 -0.39 -2.65 16 29 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.12 2.42 7.83 -52.49 -0.41 2.01 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 1.59 7.84 -51.93 -0.41 1.18 16 35 H 0.09 1.30 7.40 -51.93 -0.38 0.91 16 36 H 0.42 6.13 7.20 -40.82 -0.29 5.84 16 37 H 0.13 1.61 6.73 -52.49 -0.35 1.26 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -28.54 358.51 -11.43 -39.98 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -3.89 Total: 10.96 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -6.56 Total: -2.59 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.07 Total: -51.04 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.54 -11.43 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024762936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.598 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds