Wall clock time and date at job start Tue Mar 31 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30877 * 125.87646 * 2 1 4 4 N 1.40087 * 108.21827 * 179.97438 * 3 2 1 5 5 C 1.40185 * 126.05691 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.06925 * 144.69285 * 5 4 3 7 7 C 1.38120 * 119.93401 * 179.74557 * 6 5 4 8 8 C 1.38286 * 120.06125 * 0.53458 * 7 6 5 9 9 C 1.38279 * 120.13800 * 359.74291 * 8 7 6 10 10 C 1.38123 * 120.06234 * 359.97438 * 9 8 7 11 11 C 1.35232 * 107.89060 * 359.97438 * 4 3 2 12 12 C 1.50700 * 126.14229 * 180.02562 * 11 4 3 13 13 C 1.35317 * 107.71524 * 359.76763 * 11 4 3 14 14 C 1.50694 * 126.03541 * 180.24220 * 13 11 4 15 15 H 1.08999 * 109.38823 * 345.17524 * 14 13 11 16 16 C 1.50252 * 109.38587 * 104.96649 * 14 13 11 17 17 O 1.21279 * 118.62408 * 317.36013 * 16 14 13 18 18 N 1.33578 * 122.85828 * 137.46327 * 16 14 13 19 19 C 1.46011 * 122.88283 * 358.12596 * 18 16 14 20 20 C 1.52986 * 110.04311 * 18.25654 * 19 18 16 21 21 N 1.46901 * 109.38616 * 225.38191 * 14 13 11 22 22 C 1.46899 * 110.99961 * 66.18119 * 21 14 13 23 23 C 1.50707 * 109.47116 * 190.00096 * 22 21 14 24 24 H 1.08001 * 119.99831 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99853 * 179.97438 * 23 22 21 26 26 N 1.31515 * 120.00124 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99817 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47246 * 90.00140 * 27 25 23 29 29 H 1.48499 * 109.47227 * 209.99819 * 27 25 23 30 30 H 1.48504 * 109.47426 * 330.00258 * 27 25 23 31 31 H 1.09002 * 109.47152 * 90.02779 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02879 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.02860 * 1 2 3 34 34 H 1.07999 * 120.03238 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.97120 * 180.25353 * 7 6 5 36 36 H 1.07998 * 119.93071 * 179.76358 * 8 7 6 37 37 H 1.07988 * 119.96792 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.03144 * 180.02562 * 10 9 8 39 39 H 1.09005 * 109.47131 * 90.02585 * 12 11 4 40 40 H 1.08997 * 109.47380 * 210.02926 * 12 11 4 41 41 H 1.09008 * 109.47066 * 330.02656 * 12 11 4 42 42 H 0.97001 * 118.58112 * 178.21909 * 18 16 14 43 43 H 1.08994 * 109.37695 * 258.07863 * 19 18 16 44 44 H 1.09001 * 109.37403 * 138.42522 * 19 18 16 45 45 H 1.09001 * 109.59668 * 189.93457 * 20 19 18 46 46 H 1.08995 * 109.72046 * 69.55013 * 20 19 18 47 47 H 1.08995 * 109.47258 * 309.99604 * 22 21 14 48 48 H 1.09000 * 109.47046 * 70.00019 * 22 21 14 49 49 H 0.96997 * 119.99757 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6089 0.6355 0.0006 5 6 4.7389 1.4652 0.0003 6 6 5.8797 1.0869 0.6952 7 6 6.9933 1.9040 0.6887 8 6 6.9688 3.1029 0.0000 9 6 5.8321 3.4850 -0.6884 10 6 4.7174 2.6694 -0.6903 11 6 3.6144 -0.7168 0.0015 12 6 4.8349 -1.6006 0.0030 13 6 2.3270 -1.1337 0.0067 14 6 1.8592 -2.5662 0.0147 15 1 2.6910 -3.2200 -0.2474 16 6 1.3599 -2.9202 1.3869 17 8 1.9957 -2.5482 2.3504 18 7 0.2465 -3.6289 1.5925 19 6 -0.6107 -4.0920 0.5049 20 6 0.1563 -4.0570 -0.8183 21 7 0.7801 -2.7322 -0.9682 22 6 1.2792 -2.5370 -2.3359 23 6 0.1151 -2.4701 -3.2907 24 1 -0.8944 -2.5637 -2.9187 25 6 0.3390 -2.2895 -4.6391 26 7 1.5684 -2.1750 -5.0920 27 14 -1.1038 -2.2073 -5.8226 28 1 -1.5508 -0.7979 -5.9611 29 1 -0.6858 -2.7266 -7.1496 30 1 -2.2220 -3.0319 -5.2981 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 0.8903 0.5134 33 1 -0.3633 -0.8898 0.5143 34 1 5.8980 0.1526 1.2367 35 1 7.8825 1.6084 1.2257 36 1 7.8395 3.7419 -0.0005 37 1 5.8161 4.4217 -1.2256 38 1 3.8299 2.9682 -1.2284 39 1 5.1283 -1.8134 1.0310 40 1 4.6078 -2.5347 -0.5108 41 1 5.6517 -1.0930 -0.5103 42 1 -0.0047 -3.8445 2.5043 43 1 -1.4851 -3.4453 0.4332 44 1 -0.9337 -5.1128 0.7087 45 1 -0.5324 -4.2323 -1.6448 46 1 0.9284 -4.8264 -0.8164 47 1 1.8448 -1.6067 -2.3870 48 1 1.9259 -3.3709 -2.6092 49 1 1.7258 -2.0476 -6.0406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026719688.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:08 Heat of formation + Delta-G solvation = 83.636464 kcal Electronic energy + Delta-G solvation = -32613.464287 eV Core-core repulsion = 28542.359735 eV Total energy + Delta-G solvation = -4071.104552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49945 -39.84658 -38.84495 -36.74203 -34.63642 -33.79835 -32.78764 -32.01529 -30.95822 -30.22691 -29.10352 -28.18605 -26.94667 -26.49276 -24.58554 -23.40601 -22.70763 -22.14828 -21.10049 -19.68250 -19.46481 -18.47782 -17.24654 -16.95683 -16.72810 -16.25976 -15.83574 -15.46105 -15.13364 -14.69400 -14.53992 -14.38949 -14.28513 -13.68659 -13.59307 -13.49162 -13.30507 -13.04765 -12.90529 -12.85748 -12.62631 -12.37101 -12.11547 -11.93471 -11.87350 -11.73973 -11.58017 -11.41997 -11.16410 -11.03506 -10.93728 -10.76217 -10.58596 -10.16214 -10.09337 -9.63167 -9.46420 -9.19122 -9.08140 -8.80622 -8.49738 -8.41087 -7.71709 -7.50406 -6.07772 -4.09788 0.97911 1.25654 2.33047 2.66967 2.96148 3.12169 3.28525 3.35550 3.36642 3.67608 3.68341 4.33724 4.58969 4.71900 4.79660 4.86133 5.01680 5.06229 5.08029 5.23515 5.24398 5.27825 5.29497 5.45681 5.48428 5.52140 5.58874 5.62261 5.70775 5.76655 5.84817 5.89473 6.02790 6.20938 6.24343 6.27767 6.31881 6.35436 6.38333 6.41905 6.59151 6.60641 6.73033 6.94582 7.14428 7.18030 7.21182 7.50749 7.56163 7.67127 7.95517 8.03182 8.11929 8.36725 8.55723 8.96767 9.54562 11.02912 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.004064 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.961662 B = 6887.790418 C = 8893.343107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.130 3.870 3 N -0.303 5.303 4 N -0.333 5.333 5 C 0.173 3.827 6 C -0.138 4.138 7 C -0.100 4.100 8 C -0.132 4.132 9 C -0.101 4.101 10 C -0.114 4.114 11 C 0.101 3.899 12 C -0.095 4.095 13 C -0.186 4.186 14 C 0.148 3.852 15 H 0.069 0.931 16 C 0.533 3.467 17 O -0.556 6.556 18 N -0.720 5.720 19 C 0.113 3.887 20 C 0.039 3.961 21 N -0.517 5.517 22 C 0.196 3.804 23 C -0.508 4.508 24 H 0.065 0.935 25 C 0.058 3.942 26 N -0.895 5.895 27 Si 0.896 3.104 28 H -0.281 1.281 29 H -0.288 1.288 30 H -0.273 1.273 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.393 0.607 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.031 0.969 47 H 0.038 0.962 48 H -0.009 1.009 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 1.973 11.122 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.038 4.038 3 N -0.122 5.122 4 N -0.108 5.108 5 C 0.080 3.920 6 C -0.159 4.159 7 C -0.119 4.119 8 C -0.151 4.151 9 C -0.120 4.120 10 C -0.134 4.134 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.197 4.197 14 C 0.035 3.965 15 H 0.086 0.914 16 C 0.320 3.680 17 O -0.434 6.434 18 N -0.372 5.372 19 C -0.011 4.011 20 C -0.090 4.090 21 N -0.243 5.243 22 C 0.072 3.928 23 C -0.547 4.547 24 H 0.083 0.917 25 C -0.143 4.143 26 N -0.534 5.534 27 Si 0.724 3.276 28 H -0.207 1.207 29 H -0.214 1.214 30 H -0.198 1.198 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.228 0.772 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.127 0.873 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.009 0.991 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.825 3.905 11.300 13.299 hybrid contribution -0.255 -1.545 -0.774 1.746 sum 5.571 2.361 10.526 12.141 Atomic orbital electron populations 1.20138 0.85937 1.01657 1.04112 1.22248 0.97201 0.89375 0.94943 1.77406 0.84908 1.22282 1.27577 1.45427 1.04228 1.03115 1.58068 1.17464 0.84822 0.91758 0.97930 1.21135 0.92907 1.01713 1.00096 1.20957 0.97577 0.94185 0.99174 1.21178 0.98406 0.96974 0.98552 1.21048 0.92530 0.99440 0.98939 1.21066 0.99685 0.93705 0.98937 1.20697 0.96853 0.83803 1.00944 1.20602 0.93235 0.98429 1.03007 1.18860 0.90784 0.94251 1.15852 1.19734 0.94504 0.92639 0.89630 0.91405 1.20189 0.80043 0.76367 0.91424 1.90685 1.56578 1.53717 1.42378 1.45571 1.25408 1.55864 1.10323 1.21620 0.93714 0.99018 0.86775 1.22427 0.99009 0.90753 0.96766 1.62714 1.27542 1.27234 1.06818 1.19751 0.95656 0.96553 0.80877 1.21069 0.93033 1.49645 0.90912 0.91668 1.24959 0.95639 0.95380 0.98362 1.69958 1.19336 1.49669 1.14429 0.86539 0.82495 0.78335 0.80261 1.20673 1.21434 1.19791 0.88917 0.92518 0.90422 0.85052 0.85297 0.85714 0.85325 0.84854 0.90013 0.89665 0.90810 0.77216 0.90970 0.91040 0.87266 0.95082 0.94443 0.99078 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 9.49 36.01 0.34 -0.73 16 2 C 0.13 2.64 7.15 -82.37 -0.59 2.05 16 3 N -0.30 -6.23 12.34 33.69 0.42 -5.82 16 4 N -0.33 -6.30 3.74 -6.98 -0.03 -6.32 16 5 C 0.17 2.78 6.27 -83.59 -0.52 2.25 16 6 C -0.14 -1.81 8.28 -39.40 -0.33 -2.14 16 7 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 8 C -0.13 -1.33 10.04 -39.55 -0.40 -1.73 16 9 C -0.10 -1.16 10.04 -39.61 -0.40 -1.55 16 10 C -0.11 -1.68 9.76 -39.40 -0.38 -2.06 16 11 C 0.10 1.88 6.76 -82.14 -0.56 1.32 16 12 C -0.09 -1.38 8.33 36.01 0.30 -1.08 16 13 C -0.19 -3.70 3.24 -105.03 -0.34 -4.04 16 14 C 0.15 2.75 1.98 -70.24 -0.14 2.61 16 15 H 0.07 1.26 6.79 -51.93 -0.35 0.91 16 16 C 0.53 9.36 6.93 -11.74 -0.08 9.28 16 17 O -0.56 -11.24 17.26 5.56 0.10 -11.15 16 18 N -0.72 -9.98 5.51 -61.10 -0.34 -10.32 16 19 C 0.11 1.41 7.39 -4.31 -0.03 1.37 16 20 C 0.04 0.63 5.44 -3.67 -0.02 0.61 16 21 N -0.52 -9.95 3.19 -230.90 -0.74 -10.69 16 22 C 0.20 4.71 4.57 -4.97 -0.02 4.69 16 23 C -0.51 -13.04 8.35 -34.44 -0.29 -13.33 16 24 H 0.07 1.61 7.28 -52.49 -0.38 1.23 16 25 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 26 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 27 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.34 7.22 -51.93 -0.38 0.97 16 34 H 0.13 1.61 6.12 -52.49 -0.32 1.29 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 40 H 0.08 1.23 7.02 -51.93 -0.36 0.86 16 41 H 0.07 0.97 6.90 -51.92 -0.36 0.62 16 42 H 0.39 4.64 8.84 -40.82 -0.36 4.28 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.11 1.85 6.72 -51.93 -0.35 1.50 16 46 H 0.03 0.49 8.08 -51.93 -0.42 0.08 16 47 H 0.04 1.02 7.01 -51.93 -0.36 0.66 16 48 H -0.01 -0.22 8.11 -51.93 -0.42 -0.64 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -33.13 396.68 -9.83 -42.97 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.99 Total: 7.10 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.95 Total: -2.46 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.05 Total: -58.07 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.10 Total: -11.15 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.13 -9.83 -42.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026719688.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.603 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds