Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30876 * 125.87257 * 2 1 4 4 N 1.40087 * 108.21534 * 180.02562 * 3 2 1 5 5 C 1.40183 * 126.05540 * 180.02562 * 4 3 2 6 6 C 1.38836 * 120.06844 * 41.51788 * 5 4 3 7 7 C 1.38121 * 119.93487 * 179.74968 * 6 5 4 8 8 C 1.38285 * 120.06501 * 0.53304 * 7 6 5 9 9 C 1.38276 * 120.13338 * 359.74469 * 8 7 6 10 10 C 1.38122 * 120.06823 * 359.97438 * 9 8 7 11 11 C 1.35231 * 107.89352 * 359.77186 * 4 3 2 12 12 C 1.50703 * 126.14528 * 180.22096 * 11 4 3 13 13 C 1.35319 * 107.71038 * 0.36677 * 11 4 3 14 14 C 1.50701 * 126.03249 * 179.89380 * 13 11 4 15 15 H 1.08992 * 109.38840 * 340.25485 * 14 13 11 16 16 C 1.50257 * 109.38762 * 220.56161 * 14 13 11 17 17 O 1.21276 * 118.62298 * 42.64086 * 16 14 13 18 18 N 1.33709 * 122.75206 * 222.62525 * 16 14 13 19 19 C 1.46355 * 122.98956 * 1.68522 * 18 16 14 20 20 C 1.52976 * 109.85236 * 341.90021 * 19 18 16 21 21 N 1.46905 * 109.38452 * 100.04477 * 14 13 11 22 22 C 1.46908 * 111.00013 * 47.08744 * 21 14 13 23 23 C 1.50692 * 109.47138 * 184.42955 * 22 21 14 24 24 H 1.08002 * 120.00025 * 5.14910 * 23 22 21 25 25 C 1.37881 * 119.99926 * 185.14833 * 23 22 21 26 26 N 1.31512 * 120.00157 * 5.08923 * 25 23 22 27 27 Si 1.86805 * 119.99964 * 185.08410 * 25 23 22 28 28 H 1.48503 * 109.47196 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46942 * 119.99949 * 27 25 23 30 30 H 1.48494 * 109.47436 * 240.00365 * 27 25 23 31 31 H 1.08999 * 109.46851 * 266.30786 * 1 2 3 32 32 H 1.09000 * 109.46812 * 26.30869 * 1 2 3 33 33 H 1.09001 * 109.46880 * 146.31222 * 1 2 3 34 34 H 1.08003 * 120.03245 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.96989 * 180.25613 * 7 6 5 36 36 H 1.07991 * 119.93452 * 179.77012 * 8 7 6 37 37 H 1.07995 * 119.96836 * 180.02562 * 9 8 7 38 38 H 1.07999 * 120.03559 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.46698 * 275.10895 * 12 11 4 40 40 H 1.09001 * 109.47049 * 35.10400 * 12 11 4 41 41 H 1.08993 * 109.46847 * 155.10654 * 12 11 4 42 42 H 0.97001 * 118.54113 * 181.73122 * 18 16 14 43 43 H 1.08997 * 109.56297 * 221.72366 * 19 18 16 44 44 H 1.09004 * 109.37681 * 101.96021 * 19 18 16 45 45 H 1.08997 * 109.59405 * 290.40804 * 20 19 18 46 46 H 1.09007 * 109.59660 * 170.10709 * 20 19 18 47 47 H 1.09000 * 109.46716 * 304.42745 * 22 21 14 48 48 H 1.08999 * 109.46983 * 64.42522 * 22 21 14 49 49 H 0.96994 * 119.99809 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0006 5 6 4.7388 1.4653 -0.0003 6 6 4.7672 2.6016 0.7969 7 6 5.8840 3.4143 0.7990 8 6 6.9688 3.1031 -0.0002 9 6 6.9411 1.9752 -0.7996 10 6 5.8295 1.1554 -0.8016 11 6 3.6144 -0.7167 0.0042 12 6 4.8350 -1.6005 0.0101 13 6 2.3271 -1.1337 -0.0006 14 6 1.8593 -2.5662 -0.0001 15 1 2.6683 -3.2112 -0.3428 16 6 0.6848 -2.7077 -0.9265 17 8 0.7210 -2.1457 -2.0006 18 7 -0.3985 -3.4275 -0.6164 19 6 -0.5584 -4.1148 0.6658 20 6 0.8022 -4.2627 1.3492 21 7 1.4723 -2.9523 1.3635 22 6 0.6150 -1.9293 1.9771 23 6 0.3284 -2.3061 3.4077 24 1 0.8078 -3.1694 3.8451 25 6 -0.5459 -1.5489 4.1582 26 7 -1.2058 -0.5586 3.5984 27 14 -0.7933 -1.9297 5.9702 28 1 0.0598 -3.0829 6.3546 29 1 -0.4167 -0.7440 6.7811 30 1 -2.2190 -2.2647 6.2156 31 1 -0.3633 -0.0662 1.0255 32 1 -0.3633 0.9212 -0.4555 33 1 -0.3633 -0.8551 -0.5700 34 1 3.9187 2.8474 1.4182 35 1 5.9084 4.2960 1.4221 36 1 7.8394 3.7420 0.0003 37 1 7.7899 1.7345 -1.4224 38 1 5.8086 0.2744 -1.4259 39 1 5.1853 -1.7431 -1.0123 40 1 5.6210 -1.1306 0.6012 41 1 4.5816 -2.5670 0.4454 42 1 -1.1109 -3.4983 -1.2710 43 1 -0.9888 -5.1023 0.4994 44 1 -1.2237 -3.5355 1.3061 45 1 1.4119 -4.9790 0.7985 46 1 0.6615 -4.6125 2.3719 47 1 1.1233 -0.9654 1.9501 48 1 -0.3221 -1.8614 1.4244 49 1 -1.8212 -0.0262 4.1263 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026719693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = 97.997903 kcal Electronic energy + Delta-G solvation = -33075.378006 eV Core-core repulsion = 29004.896213 eV Total energy + Delta-G solvation = -4070.481793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.61397 -40.03630 -38.84051 -36.77361 -34.44240 -33.49677 -32.85717 -31.91514 -30.99852 -30.26520 -29.09141 -28.03837 -26.79722 -26.58151 -24.47179 -23.44866 -22.72535 -22.18208 -21.39337 -19.70914 -19.39465 -18.19955 -17.27070 -16.89067 -16.52180 -16.24725 -15.81596 -15.45520 -15.16043 -14.78820 -14.52349 -14.40477 -14.22257 -13.88113 -13.60357 -13.45598 -13.18581 -12.95545 -12.90074 -12.71368 -12.59875 -12.22686 -12.03058 -11.89246 -11.76301 -11.64806 -11.42690 -11.25756 -11.22710 -11.08887 -10.73657 -10.70139 -10.57015 -10.13455 -9.90725 -9.75579 -9.42950 -9.10282 -9.09803 -8.64163 -8.49754 -8.40375 -7.82280 -7.23869 -6.10015 -4.09676 0.97947 1.23818 2.31484 2.70099 3.06543 3.14503 3.26187 3.35418 3.38283 3.64561 3.72554 4.36969 4.70414 4.78240 4.83724 4.86771 4.98836 5.01379 5.10583 5.25904 5.26971 5.27765 5.41991 5.48098 5.50446 5.56804 5.58405 5.66477 5.73781 5.81043 5.86940 5.91615 6.02548 6.22226 6.24621 6.34515 6.36294 6.41916 6.43631 6.47600 6.61122 6.69542 6.79558 7.04317 7.18800 7.21824 7.33164 7.54044 7.66175 7.70327 7.97729 8.02946 8.15123 8.40176 8.64753 8.96852 9.54002 11.00725 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.004004 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.348162 B = 6990.814311 C = 8504.831739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.133 3.867 3 N -0.298 5.298 4 N -0.338 5.338 5 C 0.171 3.829 6 C -0.111 4.111 7 C -0.102 4.102 8 C -0.130 4.130 9 C -0.102 4.102 10 C -0.132 4.132 11 C 0.100 3.900 12 C -0.092 4.092 13 C -0.190 4.190 14 C 0.149 3.851 15 H 0.104 0.896 16 C 0.500 3.500 17 O -0.557 6.557 18 N -0.720 5.720 19 C 0.071 3.929 20 C 0.049 3.951 21 N -0.519 5.519 22 C 0.174 3.826 23 C -0.512 4.512 24 H 0.063 0.937 25 C 0.061 3.939 26 N -0.892 5.892 27 Si 0.893 3.107 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.286 1.286 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.391 0.609 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.040 0.960 48 H 0.017 0.983 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -1.367 -7.404 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.035 4.035 3 N -0.117 5.117 4 N -0.114 5.114 5 C 0.079 3.921 6 C -0.131 4.131 7 C -0.121 4.121 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.153 4.153 11 C -0.023 4.023 12 C -0.150 4.150 13 C -0.202 4.202 14 C 0.036 3.964 15 H 0.122 0.878 16 C 0.286 3.714 17 O -0.435 6.435 18 N -0.372 5.372 19 C -0.054 4.054 20 C -0.080 4.080 21 N -0.243 5.243 22 C 0.049 3.951 23 C -0.551 4.551 24 H 0.081 0.919 25 C -0.141 4.141 26 N -0.531 5.531 27 Si 0.721 3.279 28 H -0.197 1.197 29 H -0.211 1.211 30 H -0.212 1.212 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.226 0.774 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.058 0.942 48 H 0.034 0.966 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.276 0.356 -7.448 14.363 hybrid contribution -1.430 -0.903 0.425 1.744 sum 10.846 -0.547 -7.022 12.932 Atomic orbital electron populations 1.20908 0.86345 1.02336 1.06100 1.22237 0.97037 0.89705 0.94503 1.77472 0.84825 1.22013 1.27402 1.45443 1.04177 1.03129 1.58672 1.17424 0.85070 0.92355 0.97213 1.21141 0.99280 0.94395 0.98315 1.21060 0.92775 0.99295 0.98961 1.21185 0.98752 0.97583 0.97336 1.20956 0.97475 0.94537 0.99149 1.21100 0.93614 1.01602 0.98935 1.20650 0.96619 0.83730 1.01332 1.20541 0.93043 0.98864 1.02550 1.18893 0.91209 0.94085 1.15968 1.19990 0.94404 0.92861 0.89137 0.87828 1.21157 0.84935 0.77186 0.88122 1.90694 1.81327 1.46448 1.25032 1.45723 1.20364 1.52227 1.18908 1.22244 1.01617 0.96972 0.84560 1.22386 0.91151 0.92469 1.01974 1.62908 1.44441 1.03816 1.13095 1.20379 0.90333 0.90182 0.94170 1.21176 1.25044 1.12683 0.96200 0.91890 1.24913 0.95575 0.95273 0.98373 1.69891 1.27230 1.20040 1.35970 0.86525 0.77664 0.78284 0.85419 1.19712 1.21129 1.21199 0.86056 0.92103 0.90699 0.84910 0.85320 0.85706 0.85322 0.85275 0.90619 0.90942 0.88973 0.77376 0.91314 0.89363 0.92022 0.87839 0.94185 0.96570 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 8.22 36.01 0.30 -1.85 16 2 C 0.13 2.93 5.37 -82.37 -0.44 2.49 16 3 N -0.30 -6.50 12.41 33.69 0.42 -6.08 16 4 N -0.34 -6.38 3.70 -6.98 -0.03 -6.40 16 5 C 0.17 2.69 6.13 -83.59 -0.51 2.18 16 6 C -0.11 -1.63 9.84 -39.40 -0.39 -2.01 16 7 C -0.10 -1.15 10.04 -39.61 -0.40 -1.54 16 8 C -0.13 -1.26 10.04 -39.55 -0.40 -1.65 16 9 C -0.10 -1.02 10.04 -39.61 -0.40 -1.42 16 10 C -0.13 -1.65 8.57 -39.40 -0.34 -1.99 16 11 C 0.10 1.81 6.75 -82.13 -0.55 1.25 16 12 C -0.09 -1.20 8.42 36.01 0.30 -0.89 16 13 C -0.19 -3.85 3.90 -105.03 -0.41 -4.26 16 14 C 0.15 2.77 2.62 -70.23 -0.18 2.59 16 15 H 0.10 1.69 7.19 -51.93 -0.37 1.32 16 16 C 0.50 9.44 4.26 -11.68 -0.05 9.39 16 17 O -0.56 -11.97 16.13 5.56 0.09 -11.88 16 18 N -0.72 -11.71 5.30 -60.83 -0.32 -12.03 16 19 C 0.07 1.10 6.46 -4.13 -0.03 1.07 16 20 C 0.05 0.80 5.65 -3.68 -0.02 0.78 16 21 N -0.52 -10.20 4.94 -230.90 -1.14 -11.34 16 22 C 0.17 4.08 2.01 -4.98 -0.01 4.07 16 23 C -0.51 -13.10 8.43 -34.44 -0.29 -13.39 16 24 H 0.06 1.59 7.00 -52.49 -0.37 1.22 16 25 C 0.06 1.59 5.45 -17.82 -0.10 1.50 16 26 N -0.89 -24.53 13.28 55.43 0.74 -23.80 16 27 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 31 H 0.12 2.95 5.83 -51.93 -0.30 2.65 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.61 4.60 -51.93 -0.24 1.37 16 34 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.47 6.64 -52.49 -0.35 1.12 16 39 H 0.08 0.81 7.61 -51.93 -0.40 0.42 16 40 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 41 H 0.09 1.15 7.30 -51.93 -0.38 0.77 16 42 H 0.39 5.67 8.84 -40.82 -0.36 5.31 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.62 6.84 -51.93 -0.36 1.26 16 45 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.10 1.74 6.87 -51.93 -0.36 1.39 16 47 H 0.04 1.08 4.88 -51.93 -0.25 0.82 16 48 H 0.02 0.40 3.91 -51.93 -0.20 0.20 16 49 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -32.38 378.77 -9.89 -42.27 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.42 Total: 11.72 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.91 Total: -3.68 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.33 Total: -59.65 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.38 -9.89 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026719693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.264 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds