Wall clock time and date at job start Tue Mar 31 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47408 * 270.00071 * 3 2 1 5 5 H 1.48500 * 109.46976 * 30.00016 * 3 2 1 6 6 H 1.48501 * 109.47348 * 149.99607 * 3 2 1 7 7 C 1.37873 * 120.00601 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99748 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00058 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00288 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00035 * 180.02562 * 11 10 9 14 14 N 1.46501 * 109.47090 * 179.97438 * 13 11 10 15 15 C 1.35901 * 119.70243 * 89.99717 * 14 13 11 16 16 N 1.29815 * 123.35780 * 180.02562 * 15 14 13 17 17 C 1.35675 * 121.62113 * 359.97438 * 16 15 14 18 18 C 1.39762 * 121.62305 * 180.27984 * 17 16 15 19 19 Cl 1.73598 * 120.16247 * 359.97413 * 18 17 16 20 20 C 1.37749 * 119.67421 * 180.20297 * 18 17 16 21 21 C 1.38976 * 120.79825 * 359.53849 * 20 18 17 22 22 Cl 1.73593 * 119.72646 * 180.23686 * 21 20 18 23 23 C 1.37875 * 120.54975 * 0.20639 * 21 20 18 24 24 C 1.39344 * 119.53496 * 0.03036 * 23 21 20 25 25 C 1.35346 * 119.70167 * 269.97528 * 14 13 11 26 26 O 1.21730 * 121.29216 * 0.02593 * 25 14 13 27 27 H 0.96993 * 120.00685 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46899 * 59.99906 * 9 7 2 29 29 H 1.08999 * 109.47362 * 300.00089 * 9 7 2 30 30 H 0.97003 * 120.00035 * 0.02562 * 10 9 7 31 31 H 1.08989 * 109.47062 * 59.99959 * 13 11 10 32 32 H 1.08996 * 109.46747 * 299.99539 * 13 11 10 33 33 H 1.08006 * 118.31894 * 0.02562 * 15 14 13 34 34 H 1.08001 * 119.60123 * 179.76728 * 20 18 17 35 35 H 1.07999 * 120.23460 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8832 0.0000 12 8 0.5617 -5.1050 0.0000 13 6 2.7334 -6.0287 0.0006 14 7 2.0010 -7.2974 0.0005 15 6 1.6648 -7.8808 -1.1800 16 7 1.0167 -9.0025 -1.2629 17 6 0.6245 -9.6809 -0.1553 18 6 -0.0683 -10.8915 -0.2445 19 17 -0.4497 -11.5658 -1.7980 20 6 -0.4510 -11.5446 0.9064 21 6 -0.1483 -11.0192 2.1569 22 17 -0.6388 -11.8686 3.5891 23 6 0.5387 -9.8291 2.2694 24 6 0.9305 -9.1505 1.1171 25 6 1.6656 -7.8783 1.1761 26 8 1.9603 -7.3669 2.2407 27 1 -0.4851 0.8399 0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 3.1569 -3.4353 0.0009 31 1 3.3593 -5.9710 0.8910 32 1 3.3606 -5.9708 -0.8889 33 1 1.9515 -7.3857 -2.0961 34 1 -0.9895 -12.4781 0.8361 35 1 0.7716 -9.4257 3.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031637490.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:41 Heat of formation + Delta-G solvation = -31.986907 kcal Electronic energy + Delta-G solvation = -25363.361619 eV Core-core repulsion = 21220.301630 eV Total energy + Delta-G solvation = -4143.059988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 355.028 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99174 -39.53656 -38.54460 -37.84460 -36.99688 -36.50060 -34.61413 -34.26501 -32.49434 -31.72215 -30.25704 -29.16162 -26.94050 -25.14131 -24.54193 -22.64063 -22.47006 -20.22504 -19.37534 -19.27567 -17.91681 -17.53106 -16.52485 -16.22364 -15.92966 -15.61570 -15.46492 -15.03498 -14.90891 -14.80796 -14.53026 -14.31204 -14.00791 -13.30381 -13.19440 -12.99848 -12.83061 -12.65576 -12.43636 -12.08721 -11.73643 -11.54989 -11.47199 -11.21367 -11.07909 -10.95978 -10.56415 -10.45905 -10.39506 -10.32994 -9.51489 -9.50092 -9.32547 -8.85568 -8.31183 -8.10132 -6.25135 -4.33255 -0.01751 0.20017 1.42832 1.79453 1.91330 2.03675 2.26080 2.97823 3.18844 3.25322 3.27514 3.41430 3.60902 3.74348 3.83577 4.27318 4.29308 4.44270 4.47234 4.62469 4.79582 4.84535 5.02154 5.11325 5.14110 5.17920 5.43961 5.51356 5.75853 6.00387 6.19742 7.13203 7.17711 7.37519 7.37968 7.48061 7.52616 7.85333 8.37242 8.60366 8.84243 9.33500 10.84935 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.002192 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.168962 B =12768.310378 C =13600.980352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.702 5.702 11 C 0.483 3.517 12 O -0.544 6.544 13 C 0.070 3.930 14 N -0.525 5.525 15 C 0.407 3.593 16 N -0.523 5.523 17 C 0.176 3.824 18 C -0.025 4.025 19 Cl -0.031 7.031 20 C -0.058 4.058 21 C -0.054 4.054 22 Cl -0.050 7.050 23 C -0.022 4.022 24 C -0.175 4.175 25 C 0.558 3.442 26 O -0.494 6.494 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.394 0.606 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.207 0.793 34 H 0.153 0.847 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -24.383 -0.939 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.351 5.351 11 C 0.265 3.735 12 O -0.422 6.422 13 C -0.056 4.056 14 N -0.246 5.246 15 C 0.121 3.879 16 N -0.243 5.243 17 C 0.065 3.935 18 C -0.054 4.054 19 Cl -0.002 7.002 20 C -0.079 4.079 21 C -0.081 4.081 22 Cl -0.021 7.021 23 C -0.042 4.042 24 C -0.181 4.181 25 C 0.350 3.650 26 O -0.366 6.366 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.227 0.773 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.224 0.776 34 H 0.171 0.829 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.726 -24.658 -0.894 24.953 hybrid contribution 0.840 1.356 0.686 1.737 sum 4.566 -23.301 -0.208 23.745 Atomic orbital electron populations 1.69962 1.06157 1.27503 1.48502 1.24955 0.94923 0.99545 0.94544 0.86392 0.79621 0.82515 0.78260 1.20393 1.20958 1.19692 1.21183 0.93288 0.90269 1.53729 0.91746 1.19177 0.88176 0.81683 0.97961 1.46417 1.11518 1.05661 1.71466 1.20456 0.89527 0.84702 0.78795 1.90737 1.16355 1.84566 1.50562 1.21983 0.94803 0.81242 1.07539 1.46235 1.49367 1.21585 1.07399 1.24926 0.85704 0.87864 0.89382 1.68784 1.18661 1.08723 1.28160 1.18509 0.93932 0.92811 0.88286 1.20220 1.02764 0.94219 0.88188 1.98390 1.92521 1.83695 1.25546 1.20985 0.97863 1.00248 0.88788 1.20508 1.03828 0.95559 0.88221 1.98394 1.90210 1.76609 1.36902 1.20947 0.92598 0.91444 0.99200 1.20314 1.06626 0.97141 0.94063 1.18056 0.79199 0.84311 0.83426 1.90911 1.52961 1.64663 1.28062 0.92313 0.95284 0.95369 0.77341 0.85451 0.85563 0.77640 0.82907 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -14.13 9.28 -34.44 -0.32 -14.45 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.28 5.43 -5.19 -0.03 6.25 16 10 N -0.70 -13.15 5.55 -61.47 -0.34 -13.49 16 11 C 0.48 8.45 7.90 -10.99 -0.09 8.36 16 12 O -0.54 -12.19 16.43 5.56 0.09 -12.10 16 13 C 0.07 0.78 5.85 -5.19 -0.03 0.75 16 14 N -0.53 -6.51 2.09 -120.14 -0.25 -6.76 16 15 C 0.41 4.26 11.41 -90.15 -1.03 3.23 16 16 N -0.52 -6.30 9.87 -11.98 -0.12 -6.42 16 17 C 0.18 2.21 6.62 -84.47 -0.56 1.65 16 18 C -0.03 -0.28 6.35 -39.19 -0.25 -0.52 16 19 Cl -0.03 -0.31 28.55 -51.86 -1.48 -1.79 16 20 C -0.06 -0.54 9.56 -39.49 -0.38 -0.92 16 21 C -0.05 -0.54 6.32 -39.44 -0.25 -0.78 16 22 Cl -0.05 -0.44 28.93 -51.86 -1.50 -1.95 16 23 C -0.02 -0.25 9.44 -39.30 -0.37 -0.62 16 24 C -0.17 -2.31 5.89 -104.78 -0.62 -2.93 16 25 C 0.56 8.23 7.66 -12.43 -0.10 8.14 16 26 O -0.49 -8.51 16.32 5.16 0.08 -8.43 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.39 5.97 8.32 -40.82 -0.34 5.63 16 31 H 0.13 1.33 7.46 -51.94 -0.39 0.94 16 32 H 0.13 0.75 7.99 -51.93 -0.42 0.34 16 33 H 0.21 1.26 7.99 -52.48 -0.42 0.84 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.15 1.73 7.83 -52.49 -0.41 1.32 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -34.67 348.89 -9.43 -44.10 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.77 Total: 1.31 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -4.11 Total: 9.79 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.03 Total: -51.37 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.18 Total: -20.52 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -2.98 Total: -3.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.67 -9.43 -44.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031637490.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.112 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds