Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99628 * 2 1 4 4 C 1.52995 * 109.46947 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47807 * 64.99797 * 4 3 2 6 6 C 1.46897 * 110.99748 * 66.04602 * 5 4 3 7 7 C 1.53003 * 109.47139 * 199.78603 * 6 5 4 8 8 O 1.42906 * 109.46917 * 64.35953 * 7 6 5 9 9 C 1.42905 * 113.99713 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00154 * 190.00022 * 5 4 3 11 11 C 1.50699 * 109.47047 * 75.98720 * 10 5 4 12 12 O 1.21282 * 120.00012 * 356.01988 * 11 10 5 13 13 N 1.34774 * 120.00407 * 176.01990 * 11 10 5 14 14 C 1.46498 * 120.00569 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47067 * 270.00086 * 14 13 11 16 16 H 1.07994 * 119.99961 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99668 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00355 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99913 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46843 * 119.99861 * 19 17 15 22 22 H 1.48495 * 109.47424 * 240.00163 * 19 17 15 23 23 C 1.46506 * 119.99501 * 359.97438 * 13 11 10 24 24 C 1.50706 * 109.46922 * 90.00094 * 23 13 11 25 25 C 1.34515 * 125.78692 * 90.00197 * 24 23 13 26 26 C 1.41386 * 106.83743 * 179.97438 * 25 24 23 27 27 C 1.34516 * 106.83966 * 359.97438 * 26 25 24 28 28 O 1.34300 * 125.78760 * 269.69260 * 24 23 13 29 29 H 1.09005 * 109.47072 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47192 * 300.00018 * 1 2 3 31 31 H 1.09003 * 109.47465 * 59.99979 * 1 2 3 32 32 H 1.08992 * 109.47499 * 60.00050 * 3 2 1 33 33 H 1.09004 * 109.47231 * 300.00178 * 3 2 1 34 34 H 1.09003 * 109.46986 * 304.99316 * 4 3 2 35 35 H 1.09003 * 109.47360 * 184.99978 * 4 3 2 36 36 H 1.09004 * 109.47058 * 319.78310 * 6 5 4 37 37 H 1.08996 * 109.47562 * 79.78361 * 6 5 4 38 38 H 1.09001 * 109.46969 * 184.36078 * 7 6 5 39 39 H 1.08995 * 109.46941 * 304.36724 * 7 6 5 40 40 H 1.09000 * 109.46747 * 60.00277 * 9 8 7 41 41 H 1.08998 * 109.46945 * 179.97438 * 9 8 7 42 42 H 1.08996 * 109.47076 * 300.00300 * 9 8 7 43 43 H 1.09000 * 109.47392 * 315.98626 * 10 5 4 44 44 H 1.09005 * 109.46819 * 195.98174 * 10 5 4 45 45 H 1.09002 * 109.47017 * 29.99916 * 14 13 11 46 46 H 1.09004 * 109.47402 * 149.99999 * 14 13 11 47 47 H 0.97006 * 119.99953 * 179.97438 * 18 17 15 48 48 H 1.09005 * 109.46895 * 209.99593 * 23 13 11 49 49 H 1.08993 * 109.47359 * 329.99881 * 23 13 11 50 50 H 1.07995 * 126.58337 * 0.03131 * 25 24 23 51 51 H 1.07997 * 126.58019 * 179.97438 * 26 25 24 52 52 H 1.08000 * 125.78716 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 3.6950 1.4356 -2.4036 7 6 3.6956 0.6050 -3.6885 8 8 2.6254 -0.3410 -3.6446 9 6 2.5359 -1.1716 -4.8040 10 6 5.4026 0.2139 -1.1978 11 6 5.5830 -1.0232 -0.3563 12 8 4.6291 -1.5196 0.2044 13 7 6.8044 -1.5780 -0.2268 14 6 6.9799 -2.7803 0.5916 15 6 7.2881 -2.3807 2.0117 16 1 7.3477 -1.3357 2.2777 17 6 7.4939 -3.3492 2.9711 18 7 7.4218 -4.6218 2.6469 19 14 7.8766 -2.8540 4.7311 20 1 7.9016 -1.3727 4.8343 21 1 6.8308 -3.3951 5.6361 22 1 9.2008 -3.4003 5.1224 23 6 7.9567 -0.9786 -0.9047 24 6 8.5998 0.0387 0.0024 25 6 9.5819 -0.2066 0.8882 26 6 9.8809 1.0228 1.5191 27 6 9.0640 1.9460 0.9806 28 8 8.2935 1.3451 0.0592 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8465 -0.8900 34 1 3.8513 0.5684 0.8410 35 1 3.9784 2.1766 0.0889 36 1 2.7188 1.9029 -2.2735 37 1 4.4615 2.2078 -2.4697 38 1 3.5636 1.2636 -4.5469 39 1 4.6444 0.0761 -3.7787 40 1 3.4607 -1.7372 -4.9179 41 1 1.6996 -1.8617 -4.6929 42 1 2.3796 -0.5496 -5.6853 43 1 5.9608 1.0390 -0.7552 44 1 5.7719 0.0247 -2.2058 45 1 6.0639 -3.3707 0.5710 46 1 7.8036 -3.3734 0.1942 47 1 7.5670 -5.3032 3.3219 48 1 8.6801 -1.7568 -1.1483 49 1 7.6256 -0.4905 -1.8212 50 1 10.0524 -1.1596 1.0800 51 1 10.6228 1.1889 2.2861 52 1 9.0354 2.9934 1.2420 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032753236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = -79.013883 kcal Electronic energy + Delta-G solvation = -33948.568586 eV Core-core repulsion = 29530.809315 eV Total energy + Delta-G solvation = -4417.759271 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 354.203 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10590 -39.35602 -38.07093 -37.46732 -36.10547 -34.92252 -32.65174 -32.50247 -30.65598 -30.00349 -29.76197 -27.63489 -26.39495 -26.12916 -25.35164 -24.85291 -22.79050 -22.43097 -21.29098 -20.52095 -20.25422 -18.46765 -17.16379 -16.87117 -16.55677 -16.33651 -16.15313 -16.04120 -15.72381 -15.36919 -15.21085 -14.96190 -14.81951 -14.49703 -14.31016 -13.88327 -13.67804 -13.66566 -13.20252 -12.76342 -12.51521 -12.42010 -12.29779 -12.22110 -12.19673 -12.06933 -11.80288 -11.64719 -11.44065 -11.34038 -11.23949 -11.14207 -10.87528 -10.71034 -10.58310 -10.46721 -10.13023 -9.59244 -9.53722 -9.37125 -9.28847 -8.77764 -8.36517 -8.07746 -7.94278 -7.62128 -5.96343 -3.98381 2.11467 3.07708 3.32645 3.33771 3.41981 3.46524 3.64406 3.71825 3.91195 4.11508 4.29567 4.52720 4.95548 5.01892 5.08009 5.16468 5.18213 5.27689 5.31792 5.34614 5.37539 5.41041 5.42680 5.47038 5.47919 5.51486 5.52616 5.58240 5.61937 5.64657 5.73422 5.73904 5.79117 5.84085 5.88164 5.90682 6.24372 6.25643 6.45949 6.50588 6.96590 6.99794 7.19444 7.20032 7.37032 7.51247 7.55577 7.59444 7.65262 8.01472 8.32685 8.45601 9.02763 9.25169 9.65997 11.12104 Molecular weight = 354.20amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.003758 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.826001 B = 7449.722733 C = 8472.772809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.353 6.353 3 C 0.072 3.928 4 C 0.057 3.943 5 N -0.498 5.498 6 C 0.051 3.949 7 C 0.069 3.931 8 O -0.364 6.364 9 C 0.032 3.968 10 C 0.033 3.967 11 C 0.509 3.491 12 O -0.499 6.499 13 N -0.601 5.601 14 C 0.247 3.753 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.197 3.803 24 C -0.027 4.027 25 C -0.171 4.171 26 C -0.211 4.211 27 C -0.057 4.057 28 O -0.182 6.182 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.106 0.894 49 H 0.077 0.923 50 H 0.150 0.850 51 H 0.141 0.859 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 15.267 -13.212 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C -0.005 4.005 4 C -0.070 4.070 5 N -0.223 5.223 6 C -0.077 4.077 7 C -0.009 4.009 8 O -0.282 6.282 9 C -0.065 4.065 10 C -0.098 4.098 11 C 0.294 3.706 12 O -0.372 6.372 13 N -0.335 5.335 14 C 0.128 3.872 15 C -0.550 4.550 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C 0.072 3.928 24 C -0.078 4.078 25 C -0.191 4.191 26 C -0.231 4.231 27 C -0.125 4.125 28 O -0.079 6.079 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.124 0.876 49 H 0.095 0.905 50 H 0.168 0.832 51 H 0.159 0.841 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.560 14.293 -12.906 19.790 hybrid contribution 1.046 1.234 1.253 2.046 sum -3.514 15.527 -11.653 19.729 Atomic orbital electron populations 1.22666 0.82673 1.02371 0.98720 1.88224 1.17839 1.26077 1.94921 1.22481 0.93564 0.85702 0.98771 1.22183 0.93713 0.97343 0.93778 1.61441 1.15784 1.43018 1.02009 1.22230 1.01642 0.93409 0.90462 1.22514 0.90676 0.91265 0.96429 1.88091 1.50565 1.49770 1.39821 1.22694 1.01670 0.94207 0.87932 1.22139 0.89596 0.97381 1.00714 1.20178 0.83124 0.85151 0.82149 1.90731 1.38770 1.61748 1.45952 1.48362 1.05189 1.29875 1.50123 1.19317 0.98073 0.80714 0.89064 1.21443 1.47027 0.93082 0.93480 0.92380 1.24879 0.95672 0.94819 0.98634 1.69942 1.50345 0.99407 1.33942 0.86548 0.77697 0.78647 0.85212 1.19875 1.21045 1.21138 1.19783 0.89719 0.91959 0.91332 1.23061 0.99132 0.81968 1.03627 1.21604 1.00314 0.99133 0.98037 1.21813 1.03739 0.93469 1.04056 1.23797 0.95420 0.98785 0.94492 1.83935 1.52861 1.21295 1.49797 0.89979 0.95078 0.94830 0.93772 0.93888 0.88365 0.94178 0.89793 0.93400 0.93577 0.93507 0.94313 0.89882 0.94925 0.91893 0.89183 0.93593 0.95149 0.92967 0.87560 0.90489 0.83235 0.84134 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.35 -6.25 10.65 -35.23 -0.38 -6.63 16 3 C 0.07 1.03 6.02 37.16 0.22 1.26 16 4 C 0.06 0.91 4.95 -3.83 -0.02 0.89 16 5 N -0.50 -7.93 3.91 -236.07 -0.92 -8.86 16 6 C 0.05 0.61 5.22 -3.82 -0.02 0.59 16 7 C 0.07 0.80 6.11 37.16 0.23 1.02 16 8 O -0.36 -5.25 10.64 -35.23 -0.37 -5.63 16 9 C 0.03 0.35 11.01 101.05 1.11 1.46 16 10 C 0.03 0.53 3.96 -4.98 -0.02 0.51 16 11 C 0.51 10.90 7.40 -10.99 -0.08 10.82 16 12 O -0.50 -13.10 14.64 5.56 0.08 -13.02 16 13 N -0.60 -12.65 2.44 -176.42 -0.43 -13.08 16 14 C 0.25 6.38 5.20 -5.19 -0.03 6.35 16 15 C -0.51 -14.32 9.14 -34.44 -0.31 -14.63 16 16 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 19 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.20 3.18 5.81 -5.19 -0.03 3.15 16 24 C -0.03 -0.46 6.90 -35.62 -0.25 -0.70 16 25 C -0.17 -3.02 10.40 -39.70 -0.41 -3.43 16 26 C -0.21 -3.30 10.91 -39.70 -0.43 -3.73 16 27 C -0.06 -0.81 12.09 29.42 0.36 -0.45 16 28 O -0.18 -2.90 9.69 5.72 0.06 -2.85 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.54 6.08 -51.93 -0.32 0.22 16 34 H 0.10 1.95 6.61 -51.93 -0.34 1.60 16 35 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.08 0.97 5.81 -51.93 -0.30 0.66 16 37 H 0.05 0.47 8.00 -51.93 -0.42 0.06 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.54 6.67 -51.93 -0.35 0.19 16 40 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.98 7.02 -51.93 -0.36 0.61 16 44 H 0.09 1.23 5.50 -51.93 -0.29 0.95 16 45 H 0.05 1.36 7.42 -51.93 -0.39 0.98 16 46 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 49 H 0.08 0.99 6.33 -51.93 -0.33 0.66 16 50 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 51 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 52 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 426.33 15.07 6.42 6.42 Total: -1.00 -36.76 426.33 -7.01 -43.77 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.52 Total: 2.27 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 1.33 Total: 6.30 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.62 Total: -47.93 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.61 Total: -28.13 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -36.76 -7.01 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032753236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.245 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds