Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47358 * 239.99963 * 2 1 3 5 5 C 1.53002 * 109.47396 * 119.99931 * 2 1 3 6 6 C 1.50699 * 109.46844 * 59.99823 * 5 2 1 7 7 O 1.21292 * 120.00401 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99579 * 179.97438 * 6 5 2 9 9 C 1.40105 * 119.99561 * 186.03341 * 8 6 5 10 10 C 1.39389 * 120.42134 * 26.12993 * 9 8 6 11 11 C 1.38312 * 118.42262 * 180.24930 * 10 9 8 12 12 C 1.38951 * 119.18357 * 359.47662 * 11 10 9 13 13 O 1.35716 * 119.60837 * 180.23028 * 12 11 10 14 14 C 1.35638 * 117.99534 * 185.18294 * 13 12 11 15 15 C 1.39352 * 119.81985 * 254.83735 * 14 13 12 16 16 C 1.36420 * 120.17902 * 179.76072 * 15 14 13 17 17 C 1.40841 * 119.81585 * 0.54421 * 16 15 14 18 18 C 1.41195 * 120.17633 * 179.69661 * 17 16 15 19 19 H 1.07995 * 119.99875 * 176.21947 * 18 17 16 20 20 C 1.39879 * 120.00007 * 356.21934 * 18 17 16 21 21 N 1.30890 * 119.99900 * 35.63441 * 20 18 17 22 22 Si 1.86798 * 120.00185 * 215.63881 * 20 18 17 23 23 H 1.48501 * 109.47149 * 94.99647 * 22 20 18 24 24 H 1.48500 * 109.47287 * 214.99641 * 22 20 18 25 25 H 1.48504 * 109.47008 * 334.99914 * 22 20 18 26 26 C 1.40851 * 119.64855 * 359.71623 * 17 16 15 27 27 C 1.36415 * 119.81260 * 359.97438 * 26 17 16 28 28 N 1.32242 * 120.77815 * 0.53364 * 12 11 10 29 29 C 1.31920 * 121.71907 * 359.71936 * 28 12 11 30 30 H 1.08998 * 109.46763 * 299.99810 * 1 2 3 31 31 H 1.08991 * 109.47152 * 60.00055 * 1 2 3 32 32 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46913 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47152 * 299.99731 * 3 2 1 35 35 H 1.08998 * 109.47223 * 60.00472 * 3 2 1 36 36 H 1.08998 * 109.46995 * 300.00415 * 4 2 1 37 37 H 1.09004 * 109.46858 * 59.99627 * 4 2 1 38 38 H 1.08995 * 109.47536 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.47078 * 300.00271 * 5 2 1 40 40 H 1.08994 * 109.47514 * 180.02562 * 5 2 1 41 41 H 0.96996 * 120.00336 * 6.03848 * 8 6 5 42 42 H 1.07996 * 120.78809 * 359.97438 * 10 9 8 43 43 H 1.08002 * 120.40586 * 179.70484 * 11 10 9 44 44 H 1.07998 * 119.90723 * 0.02998 * 15 14 13 45 45 H 1.07999 * 120.08899 * 180.27489 * 16 15 14 46 46 H 0.96999 * 119.99760 * 179.97438 * 21 20 18 47 47 H 1.07998 * 120.09255 * 179.97438 * 26 17 16 48 48 H 1.07998 * 119.90852 * 180.02562 * 27 26 17 49 49 H 1.07999 * 119.63069 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 8 0.8407 -2.5389 0.3394 8 7 1.8638 -2.9720 2.2599 9 6 1.5044 -4.3248 2.1990 10 6 1.3209 -4.9516 0.9675 11 6 0.9613 -6.2871 0.9557 12 6 0.8067 -6.9579 2.1627 13 8 0.4586 -8.2697 2.1610 14 6 0.2119 -8.8644 3.3548 15 6 1.1496 -9.7394 3.9000 16 6 0.9112 -10.3378 5.1025 17 6 -0.2916 -10.0781 5.7878 18 6 -0.5490 -10.6984 7.0298 19 1 -1.4436 -10.4509 7.5818 20 6 0.3547 -11.6334 7.5452 21 7 1.6401 -11.4744 7.3559 22 14 -0.2728 -13.1089 8.5036 23 1 -0.4079 -14.2716 7.5898 24 1 0.6871 -13.4400 9.5872 25 1 -1.5964 -12.7881 9.0956 26 6 -1.2365 -9.1967 5.2272 27 6 -0.9802 -8.6015 4.0269 28 7 0.9889 -6.3316 3.3131 29 6 1.3272 -5.0575 3.3632 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 1.6767 -0.2074 2.1392 40 1 3.1300 -0.7208 1.2495 41 1 2.3472 -2.6328 3.0293 42 1 1.4521 -4.4062 0.0447 43 1 0.8062 -6.8032 0.0197 44 1 2.0694 -9.9408 3.3711 45 1 1.6408 -11.0122 5.5258 46 1 2.2668 -12.1226 7.7137 47 1 -2.1614 -8.9928 5.7463 48 1 -1.7034 -7.9251 3.5959 49 1 1.4670 -4.5795 4.3215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032915455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = -14.122774 kcal Electronic energy + Delta-G solvation = -29992.518450 eV Core-core repulsion = 25884.881989 eV Total energy + Delta-G solvation = -4107.636462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.04633 -39.97658 -38.37862 -37.03853 -36.40479 -34.81818 -33.65671 -32.00875 -30.28545 -29.58033 -29.14470 -27.85461 -27.48498 -27.43156 -25.32477 -23.63666 -23.00966 -21.28660 -21.00571 -20.41730 -19.37582 -18.11132 -17.59659 -17.49646 -17.18032 -16.47236 -15.80265 -15.47970 -14.95168 -14.86664 -14.73182 -14.67489 -14.31283 -14.13140 -13.91620 -13.42320 -13.31817 -13.14265 -12.86692 -12.60245 -12.48621 -12.31367 -12.21579 -12.09467 -12.05759 -11.90369 -11.51917 -11.37799 -11.15869 -11.08523 -11.03709 -10.96070 -10.81212 -10.64555 -10.30428 -10.09700 -9.87346 -9.54180 -9.44560 -9.00679 -8.86912 -7.71222 -7.59197 -7.40887 -7.00751 -4.41522 1.31380 1.53010 2.42854 2.53860 2.82995 2.95044 3.01032 3.08527 3.11045 3.77280 3.97452 4.11969 4.25564 4.38791 4.48616 4.51804 4.73395 4.83620 5.03467 5.09494 5.13553 5.16395 5.25216 5.33452 5.41164 5.46181 5.59987 5.64467 5.66270 5.80883 5.81572 5.84388 5.93645 5.97700 6.14448 6.20897 6.22654 6.24269 6.29391 6.41448 6.72156 6.83024 6.92799 7.15260 7.18706 7.31063 7.50507 7.58508 7.92044 7.94225 8.00001 8.13109 8.25559 8.46437 8.60147 8.76120 8.99241 9.82137 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.001719 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.591656 B =16281.184909 C =16545.473066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.131 4.131 6 C 0.511 3.489 7 O -0.514 6.514 8 N -0.662 5.662 9 C 0.034 3.966 10 C -0.052 4.052 11 C -0.185 4.185 12 C 0.307 3.693 13 O -0.235 6.235 14 C -0.079 4.079 15 C -0.078 4.078 16 C -0.200 4.200 17 C 0.106 3.894 18 C -0.444 4.444 19 H 0.084 0.916 20 C 0.080 3.920 21 N -0.754 5.754 22 Si 0.909 3.091 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.257 1.257 26 C -0.230 4.230 27 C -0.066 4.066 28 N -0.494 5.494 29 C 0.118 3.882 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.410 0.590 42 H 0.152 0.848 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.145 0.855 46 H 0.285 0.715 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 19.649 -9.459 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.211 4.211 5 C -0.171 4.171 6 C 0.300 3.700 7 O -0.390 6.390 8 N -0.307 5.307 9 C -0.062 4.062 10 C -0.079 4.079 11 C -0.206 4.206 12 C 0.130 3.870 13 O -0.139 6.139 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.219 4.219 17 C 0.103 3.897 18 C -0.470 4.470 19 H 0.103 0.897 20 C -0.143 4.143 21 N -0.376 5.376 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.181 1.181 26 C -0.250 4.250 27 C -0.085 4.085 28 N -0.216 5.216 29 C -0.042 4.042 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.245 0.755 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.108 0.892 45 H 0.162 0.838 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.136 18.652 -9.507 21.340 hybrid contribution 0.230 0.223 0.327 0.458 sum 4.365 18.876 -9.180 21.439 Atomic orbital electron populations 1.22118 0.93936 1.04220 1.00913 1.20278 0.96498 0.94515 0.93887 1.21900 1.00850 0.95231 1.01979 1.22117 0.99993 1.02844 0.96192 1.21806 1.02519 0.91897 1.00915 1.20869 0.79739 0.87778 0.81656 1.90574 1.36135 1.76919 1.35400 1.43395 1.57287 1.06953 1.23077 1.18602 1.07657 0.84596 0.95351 1.21412 0.95775 0.92934 0.97749 1.21017 1.07722 0.94293 0.97594 1.20781 0.90129 0.87151 0.88971 1.84784 1.79956 1.17773 1.31416 1.18032 0.97381 1.05817 0.90923 1.20455 0.96040 0.98185 0.94980 1.21640 1.00468 1.05174 0.94607 1.17666 0.90870 0.88611 0.92587 1.19693 1.05656 1.18439 1.03213 0.89743 1.26147 0.93864 0.99376 0.94874 1.69871 1.02945 1.32243 1.32572 0.86274 0.80343 0.80952 0.79191 1.18895 1.20088 1.18103 1.20399 1.01137 1.06008 0.97431 1.20294 0.95117 0.98252 0.94844 1.67558 1.15860 1.09674 1.28507 1.22230 0.96063 0.89379 0.96526 0.93504 0.93007 0.89724 0.92665 0.92315 0.92653 0.89797 0.92989 0.93496 0.88680 0.88589 0.75484 0.83047 0.84277 0.89174 0.83782 0.90319 0.88742 0.89549 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.18 37.16 0.30 -1.01 16 2 C -0.05 -0.37 0.77 -154.51 -0.12 -0.49 16 3 C -0.14 -0.79 8.47 37.16 0.31 -0.48 16 4 C -0.15 -1.26 8.18 37.16 0.30 -0.95 16 5 C -0.13 -0.82 4.77 -27.88 -0.13 -0.95 16 6 C 0.51 4.90 7.05 -10.98 -0.08 4.82 16 7 O -0.51 -6.45 8.65 5.55 0.05 -6.40 16 8 N -0.66 -6.24 5.37 -9.73 -0.05 -6.29 16 9 C 0.03 0.46 6.43 -83.48 -0.54 -0.08 16 10 C -0.05 -0.75 8.80 -39.13 -0.34 -1.09 16 11 C -0.18 -3.02 10.04 -39.29 -0.39 -3.42 16 12 C 0.31 6.12 7.37 -17.11 -0.13 6.00 16 13 O -0.23 -5.28 9.95 -2.24 -0.02 -5.31 16 14 C -0.08 -1.93 5.14 -38.75 -0.20 -2.13 16 15 C -0.08 -1.94 9.92 -39.82 -0.40 -2.34 16 16 C -0.20 -5.27 9.01 -39.25 -0.35 -5.63 16 17 C 0.11 2.82 5.74 -106.80 -0.61 2.20 16 18 C -0.44 -11.43 8.96 -37.85 -0.34 -11.77 16 19 H 0.08 2.09 8.04 -52.49 -0.42 1.67 16 20 C 0.08 1.91 5.09 -17.34 -0.09 1.83 16 21 N -0.75 -18.35 10.58 55.54 0.59 -17.76 16 22 Si 0.91 17.64 29.67 -169.99 -5.04 12.60 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 26 C -0.23 -5.79 9.74 -39.25 -0.38 -6.18 16 27 C -0.07 -1.61 9.60 -39.82 -0.38 -1.99 16 28 N -0.49 -9.83 9.15 -13.16 -0.12 -9.95 16 29 C 0.12 1.82 11.09 -17.34 -0.19 1.62 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.93 5.51 -51.93 -0.29 0.65 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.87 5.51 -51.93 -0.29 0.58 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.41 2.47 8.80 -40.82 -0.36 2.11 16 42 H 0.15 2.07 6.01 -52.49 -0.32 1.75 16 43 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 44 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.15 3.84 5.11 -52.49 -0.27 3.57 16 46 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 47 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 48 H 0.09 1.97 8.06 -52.49 -0.42 1.54 16 49 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -30.16 399.89 -9.32 -39.48 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.99 Total: 9.64 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.75 Total: -22.04 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.42 Total: -34.00 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.03 Total: -11.71 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.04 Total: 12.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.16 -9.32 -39.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032915455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.360 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds