Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34092 * 125.79174 * 2 1 4 4 C 1.34162 * 110.78249 * 180.16226 * 3 2 1 5 5 C 1.34323 * 109.05214 * 359.54565 * 4 3 2 6 6 C 1.36033 * 125.79128 * 179.66683 * 2 1 3 7 7 C 1.47905 * 127.13897 * 0.03904 * 6 2 1 8 8 N 1.31253 * 126.46931 * 46.56546 * 7 6 2 9 9 N 1.28508 * 109.98584 * 179.82106 * 8 7 6 10 10 C 1.31296 * 110.10437 * 0.45327 * 9 8 7 11 11 S 1.76194 * 126.39005 * 179.70403 * 10 9 8 12 12 C 1.80997 * 100.00000 * 0.02881 * 11 10 9 13 13 C 1.50711 * 109.47054 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99548 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99794 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00007 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00163 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47087 * 89.99875 * 17 15 13 19 19 H 1.48503 * 109.47074 * 209.99560 * 17 15 13 20 20 H 1.48503 * 109.47168 * 329.99840 * 17 15 13 21 21 N 1.36727 * 107.22005 * 359.72938 * 10 9 8 22 22 C 1.46501 * 127.18723 * 179.97438 * 21 10 9 23 23 C 1.50704 * 109.46972 * 274.43085 * 22 21 10 24 24 C 1.38233 * 120.00093 * 275.04167 * 23 22 21 25 25 C 1.38232 * 119.99811 * 179.76927 * 24 23 22 26 26 C 1.38241 * 120.00254 * 0.50370 * 25 24 23 27 27 C 1.38229 * 119.99396 * 359.74942 * 26 25 24 28 28 C 1.38234 * 120.00685 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47125 * 270.33674 * 1 2 3 30 30 H 1.08995 * 109.46875 * 30.33550 * 1 2 3 31 31 H 1.08995 * 109.47151 * 150.33715 * 1 2 3 32 32 H 1.08003 * 125.47320 * 179.81817 * 4 3 2 33 33 H 1.07997 * 126.98234 * 180.26304 * 5 4 3 34 34 H 1.09001 * 109.47452 * 299.99724 * 12 11 10 35 35 H 1.08995 * 109.47424 * 60.00178 * 12 11 10 36 36 H 0.96995 * 120.00278 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.46990 * 34.42885 * 22 21 10 38 38 H 1.08994 * 109.47102 * 154.43035 * 22 21 10 39 39 H 1.07997 * 119.99803 * 359.97438 * 24 23 22 40 40 H 1.08005 * 119.99971 * 180.22484 * 25 24 23 41 41 H 1.07990 * 120.00119 * 179.72462 * 26 25 24 42 42 H 1.08009 * 119.99619 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.00336 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2913 1.0877 0.0000 4 6 3.5871 0.7402 -0.0036 5 6 3.6818 -0.5996 0.0041 6 6 2.3026 -1.1034 0.0064 7 6 1.8685 -2.5173 0.0138 8 7 0.9462 -3.0542 -0.7502 9 7 0.8266 -4.3051 -0.4813 10 6 1.6579 -4.6422 0.4773 11 16 1.8454 -6.2459 1.1826 12 6 0.6172 -7.1595 0.2168 13 6 0.6003 -8.6000 0.6595 14 1 1.2635 -8.9313 1.4449 15 6 -0.2625 -9.4945 0.0625 16 7 -0.2776 -10.7515 0.4491 17 14 -1.4100 -8.9212 -1.2954 18 1 -0.7367 -9.0748 -2.6101 19 1 -2.6488 -9.7399 -1.2752 20 1 -1.7567 -7.4933 -1.0806 21 7 2.3507 -3.5164 0.8267 22 6 3.3894 -3.3986 1.8531 23 6 2.7455 -3.1560 3.1939 24 6 2.4074 -1.8713 3.5760 25 6 1.8124 -1.6494 4.8038 26 6 1.5650 -2.7110 5.6540 27 6 1.9079 -3.9950 5.2741 28 6 2.4977 -4.2177 4.0439 29 1 -0.3633 0.0060 1.0277 30 1 -0.3633 0.8869 -0.5190 31 1 -0.3633 -0.8929 -0.5086 32 1 4.4203 1.4275 -0.0071 33 1 4.5882 -1.1868 0.0076 34 1 -0.3679 -6.7196 0.3724 35 1 0.8751 -7.1079 -0.8410 36 1 -0.8843 -11.3809 0.0289 37 1 3.9696 -4.3206 1.8902 38 1 4.0476 -2.5646 1.6099 39 1 2.6051 -1.0414 2.9138 40 1 1.5449 -0.6460 5.1008 41 1 1.1043 -2.5370 6.6151 42 1 1.7150 -4.8244 5.9385 43 1 2.7659 -5.2210 3.7472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032950205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = 113.750878 kcal Electronic energy + Delta-G solvation = -28403.677912 eV Core-core repulsion = 24543.080333 eV Total energy + Delta-G solvation = -3860.597579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.84435 -42.28942 -39.37131 -35.30820 -33.84527 -33.10843 -32.10063 -31.40057 -31.03929 -30.13412 -29.32479 -27.06179 -26.58589 -23.53492 -22.95751 -22.46750 -22.21422 -21.72476 -21.23590 -19.65166 -17.94923 -17.25303 -17.08670 -16.70023 -16.42582 -16.09091 -15.76445 -15.37929 -15.10738 -14.88412 -14.26257 -13.79311 -13.58816 -13.53054 -13.48649 -13.29078 -13.15307 -13.11968 -12.82356 -12.78318 -12.51937 -12.40377 -12.05334 -11.58726 -11.39836 -11.19482 -10.92206 -10.79670 -10.53624 -10.33402 -10.10668 -10.05517 -9.81368 -9.44011 -9.34283 -9.04495 -9.01363 -8.75087 -8.59712 -6.99378 -6.23474 -4.28555 1.02219 1.25211 1.27966 1.69787 1.74231 2.31563 2.59940 2.83413 3.12963 3.16640 3.29230 3.37077 3.44304 3.69255 4.20090 4.32964 4.38294 4.41787 4.46204 4.69626 4.83520 4.86621 4.98091 5.00495 5.10200 5.13527 5.25566 5.31808 5.35988 5.38006 5.44814 5.55751 5.65396 5.78378 5.81830 5.90743 6.00181 6.06757 6.19362 6.28445 6.38222 6.42445 6.66794 6.70650 6.80256 6.83238 6.90684 7.33229 8.18796 8.72203 8.91428 9.32202 10.87482 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003568 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.437444 B = 7845.802938 C = 9568.626188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.049 3.951 3 O -0.176 6.176 4 C -0.032 4.032 5 C -0.198 4.198 6 C -0.115 4.115 7 C 0.239 3.761 8 N -0.275 5.275 9 N -0.296 5.296 10 C 0.180 3.820 11 S -0.016 6.016 12 C 0.034 3.966 13 C -0.526 4.526 14 H 0.084 0.916 15 C 0.088 3.912 16 N -0.888 5.888 17 Si 0.873 3.127 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.257 1.257 21 N -0.458 5.458 22 C 0.150 3.850 23 C -0.117 4.117 24 C -0.095 4.095 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.085 4.085 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.208 0.792 33 H 0.153 0.847 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.270 0.730 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.767 24.190 6.996 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.004 4.004 3 O -0.072 6.072 4 C -0.099 4.099 5 C -0.218 4.218 6 C -0.119 4.119 7 C -0.029 4.029 8 N -0.115 5.115 9 N -0.140 5.140 10 C -0.193 4.193 11 S 0.214 5.786 12 C -0.114 4.114 13 C -0.565 4.565 14 H 0.102 0.898 15 C -0.118 4.118 16 N -0.525 5.525 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.181 1.181 21 N -0.152 5.152 22 C 0.028 3.972 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.145 4.145 26 C -0.128 4.128 27 C -0.137 4.137 28 C -0.104 4.104 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.224 0.776 33 H 0.170 0.830 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.225 23.737 6.752 26.013 hybrid contribution -0.146 0.486 -0.761 0.915 sum 8.079 24.223 5.991 26.228 Atomic orbital electron populations 1.20504 0.84149 1.05264 1.03929 1.22557 0.93861 0.82860 1.01094 1.83867 1.16886 1.34535 1.71959 1.23805 0.83854 0.95942 1.06269 1.22762 0.96332 0.94470 1.08233 1.18311 0.92692 0.87628 1.13302 1.21697 0.97603 0.89388 0.94189 1.74251 1.14850 1.01894 1.20549 1.74735 1.20205 1.05435 1.13589 1.27467 0.96015 0.95846 1.00011 1.85402 1.54287 0.89846 1.49065 1.21690 0.94429 0.98201 0.97125 1.20358 1.24077 0.89117 1.22943 0.89823 1.24756 0.96192 0.94400 0.96441 1.69848 1.37707 1.02928 1.41974 0.86848 0.80725 0.79994 0.82546 1.19657 1.20781 1.18141 1.46542 1.31842 1.07300 1.29499 1.20766 0.87942 1.05107 0.83387 1.19852 1.02572 0.94184 0.95223 1.20992 0.97953 0.96059 0.96394 1.21089 0.99912 0.99104 0.94409 1.21232 0.99042 0.92928 0.99571 1.21213 0.98682 0.97159 0.96640 1.21279 0.96736 0.98850 0.93506 0.89872 0.90069 0.87768 0.77594 0.82963 0.92947 0.93430 0.92037 0.87566 0.87822 0.86404 0.86096 0.85975 0.85450 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.23 36.01 0.37 -0.47 16 2 C 0.05 0.57 7.37 -35.10 -0.26 0.31 16 3 O -0.18 -1.77 10.55 6.65 0.07 -1.70 16 4 C -0.03 -0.25 12.04 29.35 0.35 0.10 16 5 C -0.20 -1.92 9.99 -37.49 -0.37 -2.29 16 6 C -0.12 -1.49 6.00 -103.25 -0.62 -2.11 16 7 C 0.24 3.93 7.59 -153.79 -1.17 2.76 16 8 N -0.27 -5.44 11.39 32.60 0.37 -5.06 16 9 N -0.30 -6.48 11.58 30.72 0.36 -6.13 16 10 C 0.18 3.53 8.07 -88.15 -0.71 2.82 16 11 S -0.02 -0.32 21.43 -107.50 -2.30 -2.62 16 12 C 0.03 0.83 4.05 36.01 0.15 0.98 16 13 C -0.53 -14.56 9.68 -34.44 -0.33 -14.89 16 14 H 0.08 2.46 7.95 -52.49 -0.42 2.04 16 15 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 16 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 17 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 N -0.46 -7.36 2.82 -115.35 -0.33 -7.68 16 22 C 0.15 1.82 6.02 -5.19 -0.03 1.79 16 23 C -0.12 -1.43 5.46 -104.62 -0.57 -2.00 16 24 C -0.10 -1.06 9.72 -39.59 -0.38 -1.45 16 25 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 26 C -0.11 -1.11 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 28 C -0.09 -1.06 9.68 -39.58 -0.38 -1.44 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.29 7.16 -51.93 -0.37 0.92 16 32 H 0.21 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.15 1.22 7.62 -52.49 -0.40 0.82 16 34 H 0.05 1.33 7.20 -51.92 -0.37 0.95 16 35 H 0.05 1.19 7.57 -51.92 -0.39 0.80 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.11 1.21 7.91 -51.93 -0.41 0.80 16 38 H 0.10 1.00 6.28 -51.93 -0.33 0.68 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.13 1.68 7.65 -52.48 -0.40 1.28 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -33.73 385.70 -10.40 -44.12 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.22 Total: 0.42 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -5.26 Total: -18.42 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 1.17 Total: -44.43 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: 0.07 Total: -1.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.30 Total: -2.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.73 -10.40 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032950205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.872 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds