Wall clock time and date at job start Tue Mar 31 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48497 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47249 * 300.00335 * 3 2 1 6 6 H 1.48505 * 109.47026 * 60.00099 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99881 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00316 * 270.00259 * 10 9 7 12 12 O 1.21291 * 119.99451 * 5.01440 * 11 10 9 13 13 C 1.50696 * 120.00197 * 185.01067 * 11 10 9 14 14 O 1.42899 * 109.47153 * 180.38263 * 13 11 10 15 15 C 1.34998 * 116.99975 * 179.97438 * 14 13 11 16 16 O 1.21711 * 120.00143 * 0.02562 * 15 14 13 17 17 C 1.41284 * 120.00074 * 179.97438 * 15 14 13 18 18 C 1.35752 * 120.00407 * 184.00295 * 17 15 14 19 19 C 1.41531 * 119.99628 * 9.52817 * 18 17 15 20 20 C 1.38003 * 126.10502 * 219.06127 * 19 18 17 21 21 C 1.40281 * 106.52789 * 179.88502 * 20 19 18 22 22 C 1.35182 * 107.20652 * 0.37789 * 21 20 19 23 23 O 1.34008 * 109.04360 * 359.76314 * 22 21 20 24 24 C 1.39923 * 120.00200 * 90.00743 * 10 9 7 25 25 C 1.38875 * 120.06955 * 255.67229 * 24 10 9 26 26 C 1.38116 * 119.92902 * 180.22333 * 25 24 10 27 27 C 1.38275 * 120.06749 * 359.47378 * 26 25 24 28 28 C 1.38289 * 120.14432 * 0.55199 * 27 26 25 29 29 C 1.38104 * 120.06800 * 359.69933 * 28 27 26 30 30 H 0.97005 * 119.99335 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46991 * 60.01111 * 9 7 2 32 32 H 1.08998 * 109.47728 * 300.00734 * 9 7 2 33 33 H 1.09001 * 109.47126 * 300.38711 * 13 11 10 34 34 H 1.09005 * 109.46853 * 60.38560 * 13 11 10 35 35 H 1.08003 * 120.00346 * 4.00940 * 17 15 14 36 36 H 1.08000 * 120.00570 * 189.52259 * 18 17 15 37 37 H 1.08002 * 126.74041 * 0.02562 * 20 19 18 38 38 H 1.07995 * 126.39944 * 180.18178 * 21 20 19 39 39 H 1.08001 * 125.48233 * 179.76362 * 22 21 20 40 40 H 1.07997 * 120.03199 * 359.95400 * 25 24 10 41 41 H 1.08002 * 119.96436 * 179.72682 * 26 25 24 42 42 H 1.08006 * 119.93008 * 180.24627 * 27 26 25 43 43 H 1.08005 * 119.96148 * 179.72530 * 28 27 26 44 44 H 1.08004 * 120.03887 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6409 -4.1249 -1.1678 12 8 2.3189 -3.6069 -2.2161 13 6 3.5307 -5.3412 -1.1702 14 8 3.8654 -5.6837 -2.5165 15 6 4.6631 -6.7581 -2.6954 16 8 5.0625 -7.3864 -1.7326 17 6 5.0334 -7.1537 -4.0002 18 6 5.7679 -8.2802 -4.1852 19 6 5.9919 -9.1645 -3.1032 20 6 7.1662 -9.8369 -2.8321 21 6 6.9354 -10.5914 -1.6722 22 6 5.6579 -10.3629 -1.2941 23 8 5.0936 -9.5054 -2.1556 24 6 2.6574 -4.1446 1.2112 25 6 3.9359 -3.8482 1.6652 26 6 4.3833 -4.3785 2.8595 27 6 3.5557 -5.1950 3.6081 28 6 2.2822 -5.4925 3.1586 29 6 1.8308 -4.9696 1.9627 30 1 -0.4849 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8904 32 1 0.6245 -2.5571 0.8896 33 1 4.4422 -5.1256 -0.6127 34 1 3.0073 -6.1752 -0.7025 35 1 4.7322 -6.5597 -4.8505 36 1 6.1812 -8.5018 -5.1581 37 1 8.0836 -9.7895 -3.4000 38 1 7.6449 -11.2370 -1.1760 39 1 5.1702 -10.8010 -0.4358 40 1 4.5812 -3.2072 1.0829 41 1 5.3791 -4.1520 3.2109 42 1 3.9064 -5.6053 4.5436 43 1 1.6399 -6.1342 3.7435 44 1 0.8360 -5.2019 1.6123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033408846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:20 Heat of formation + Delta-G solvation = -34.380929 kcal Electronic energy + Delta-G solvation = -30748.632827 eV Core-core repulsion = 26406.566149 eV Total energy + Delta-G solvation = -4342.066678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62196 -40.65180 -39.74711 -38.15382 -36.64105 -34.85669 -34.38658 -33.04536 -32.73036 -30.73429 -29.84463 -29.41578 -28.66579 -26.69248 -24.68645 -22.92375 -22.48873 -22.18004 -21.87389 -21.48217 -19.76985 -19.16843 -18.38792 -17.48982 -17.01821 -16.69374 -16.40355 -16.25201 -16.04198 -15.62095 -15.32460 -14.98620 -14.51867 -14.42994 -14.23398 -14.00843 -13.82198 -13.20516 -13.13111 -13.05141 -12.85835 -12.76835 -12.63308 -12.35467 -12.23176 -12.15632 -11.53260 -11.23489 -11.07953 -10.86650 -10.68678 -10.61753 -10.56631 -10.41159 -10.19446 -9.97087 -9.71878 -9.37582 -8.72303 -8.52490 -8.44986 -8.25331 -7.86061 -6.08261 -4.12399 0.17193 1.50680 1.61134 1.85483 2.43288 2.63402 2.87942 3.08887 3.14135 3.29121 3.36443 3.40935 3.82961 3.97390 4.42518 4.48648 4.71319 4.79310 4.82391 4.88900 5.10931 5.14166 5.15281 5.26826 5.28459 5.31357 5.32971 5.44576 5.51347 5.64568 5.70431 5.75829 5.78677 5.96808 6.00673 6.22727 6.30085 6.42947 6.56604 6.69262 6.77872 6.91869 6.98285 7.15566 7.28436 7.40148 7.76910 7.87392 8.14932 8.23267 8.75838 8.92576 9.52031 11.00392 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.002805 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.564612 B = 9978.849137 C =11433.252071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.558 5.558 11 C 0.515 3.485 12 O -0.504 6.504 13 C 0.054 3.946 14 O -0.324 6.324 15 C 0.487 3.513 16 O -0.494 6.494 17 C -0.182 4.182 18 C 0.017 3.983 19 C -0.007 4.007 20 C -0.171 4.171 21 C -0.228 4.228 22 C -0.009 4.009 23 O -0.135 6.135 24 C 0.151 3.849 25 C -0.116 4.116 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.112 4.112 29 C -0.121 4.121 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.200 0.800 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 -21.372 -0.717 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.134 3.866 10 N -0.289 5.289 11 C 0.301 3.699 12 O -0.378 6.378 13 C -0.025 4.025 14 O -0.239 6.239 15 C 0.334 3.666 16 O -0.385 6.385 17 C -0.201 4.201 18 C -0.002 4.002 19 C -0.058 4.058 20 C -0.190 4.190 21 C -0.247 4.247 22 C -0.080 4.080 23 O -0.028 6.028 24 C 0.059 3.941 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.146 4.146 28 C -0.131 4.131 29 C -0.141 4.141 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.217 0.783 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.716 -20.965 -1.026 24.039 hybrid contribution 0.636 1.033 0.439 1.290 sum 12.351 -19.932 -0.587 23.456 Atomic orbital electron populations 1.69939 1.05983 1.27027 1.50375 1.24914 0.94904 0.99239 0.94951 0.86414 0.80020 0.83235 0.77611 1.19750 1.20792 1.20933 1.21390 0.93436 0.90360 1.51160 0.92271 1.19473 0.86837 0.81448 0.98835 1.45845 1.46110 1.35076 1.01883 1.19776 0.81438 0.84338 0.84370 1.90732 1.56090 1.60542 1.30443 1.22414 1.00422 0.97799 0.81816 1.86262 1.61801 1.45390 1.30422 1.20001 0.76832 0.78608 0.91170 1.90935 1.51777 1.52694 1.43081 1.21573 1.02889 0.99742 0.95897 1.20769 0.93156 0.90182 0.96054 1.19630 0.90354 1.02760 0.93014 1.22203 0.98262 0.98990 0.99585 1.21657 0.97306 1.05923 0.99858 1.24239 0.94094 0.94371 0.95283 1.84285 1.39207 1.48311 1.30995 1.17757 0.93038 0.94785 0.88492 1.21465 0.96180 0.99192 0.96756 1.21003 0.99733 0.97675 0.94573 1.21097 0.94406 0.99311 0.99782 1.20976 0.96094 1.00151 0.95848 1.21380 1.00078 0.97146 0.95465 0.92682 0.93362 0.94419 0.88950 0.88979 0.82818 0.81773 0.83188 0.83438 0.78336 0.85729 0.86019 0.86272 0.85991 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.59 5.11 -5.19 -0.03 6.57 16 10 N -0.56 -12.22 2.49 -114.73 -0.29 -12.50 16 11 C 0.52 11.24 7.68 -10.98 -0.08 11.15 16 12 O -0.50 -13.03 16.13 -14.36 -0.23 -13.26 16 13 C 0.05 0.94 4.68 36.00 0.17 1.11 16 14 O -0.32 -5.67 9.64 -48.08 -0.46 -6.13 16 15 C 0.49 7.30 7.52 31.89 0.24 7.54 16 16 O -0.49 -8.05 12.08 -27.75 -0.34 -8.39 16 17 C -0.18 -1.98 9.99 -39.31 -0.39 -2.37 16 18 C 0.02 0.15 9.95 -39.22 -0.39 -0.24 16 19 C -0.01 -0.08 5.36 -38.41 -0.21 -0.29 16 20 C -0.17 -1.64 10.90 -38.90 -0.42 -2.06 16 21 C -0.23 -2.11 10.87 -39.90 -0.43 -2.55 16 22 C -0.01 -0.09 12.06 29.64 0.36 0.26 16 23 O -0.13 -1.73 7.72 -20.27 -0.16 -1.89 16 24 C 0.15 2.77 4.13 -83.69 -0.35 2.42 16 25 C -0.12 -1.95 9.01 -39.39 -0.35 -2.31 16 26 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16 27 C -0.13 -1.60 10.04 -39.55 -0.40 -1.99 16 28 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 29 C -0.12 -1.93 9.97 -39.40 -0.39 -2.32 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.05 1.40 7.50 -51.93 -0.39 1.01 16 32 H 0.04 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.09 1.54 7.23 -51.93 -0.38 1.16 16 34 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 35 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.20 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 43 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -36.33 391.99 -9.12 -45.45 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.38 Total: 2.04 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.90 Total: -2.44 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.45 Total: -38.31 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.19 Total: -29.67 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.33 -9.12 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033408846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.072 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds