Wall clock time and date at job start Tue Mar 31 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35662 * 117.00233 * 2 1 4 4 C 1.38676 * 120.15117 * 0.02562 * 3 2 1 5 5 C 1.38082 * 120.08624 * 179.97438 * 4 3 2 6 6 C 1.38572 * 120.39378 * 0.02562 * 5 4 3 7 7 C 1.37783 * 120.29503 * 359.67789 * 6 5 4 8 8 C 1.39719 * 119.90934 * 0.59639 * 7 6 5 9 9 C 1.47640 * 120.19514 * 179.69690 * 8 7 6 10 10 O 1.21793 * 119.99904 * 179.72765 * 9 8 7 11 11 C 1.41834 * 119.99806 * 359.73340 * 9 8 7 12 12 C 1.35255 * 120.00004 * 186.81215 * 11 9 8 13 13 C 1.46852 * 120.00123 * 11.01038 * 12 11 9 14 14 C 1.40099 * 120.08218 * 46.40743 * 13 12 11 15 15 C 1.37612 * 119.99984 * 180.25278 * 14 13 12 16 16 C 1.39095 * 120.16146 * 359.74956 * 15 14 13 17 17 O 1.35588 * 119.91714 * 179.97438 * 16 15 14 18 18 C 1.34729 * 117.00242 * 354.15602 * 17 16 15 19 19 H 1.08009 * 120.00011 * 5.06941 * 18 17 16 20 20 C 1.38737 * 120.00578 * 185.07080 * 18 17 16 21 21 N 1.31503 * 119.99598 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47067 * 89.99852 * 22 20 18 24 24 H 1.48499 * 109.47397 * 209.99803 * 22 20 18 25 25 H 1.48500 * 109.46943 * 330.00153 * 22 20 18 26 26 C 1.39665 * 120.16739 * 359.97438 * 16 15 14 27 27 O 1.35942 * 119.99743 * 180.02562 * 26 16 15 28 28 C 1.42902 * 116.99888 * 179.97438 * 27 26 16 29 29 C 1.38040 * 119.99782 * 359.97438 * 26 16 15 30 30 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46784 * 300.00465 * 1 2 3 32 32 H 1.09001 * 109.46582 * 59.99858 * 1 2 3 33 33 H 1.07993 * 119.95659 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.80949 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.84896 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.04749 * 180.32741 * 7 6 5 37 37 H 1.08007 * 120.00201 * 6.80514 * 11 9 8 38 38 H 1.08001 * 119.99988 * 191.01491 * 12 11 9 39 39 H 1.07998 * 120.00582 * 0.02562 * 14 13 12 40 40 H 1.07994 * 119.92583 * 179.77205 * 15 14 13 41 41 H 0.97005 * 119.99756 * 180.02562 * 21 20 18 42 42 H 1.09006 * 109.47393 * 179.97438 * 28 27 26 43 43 H 1.08994 * 109.47437 * 300.00476 * 28 27 26 44 44 H 1.08998 * 109.46620 * 60.00727 * 28 27 26 45 45 H 1.08006 * 120.07652 * 179.97438 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2928 2.3738 0.0005 5 6 1.9212 3.6034 0.0011 6 6 3.3046 3.6838 0.0005 7 6 4.0675 2.5365 0.0062 8 6 3.4448 1.2857 -0.0002 9 6 4.2562 0.0523 -0.0010 10 8 3.7096 -1.0361 -0.0015 11 6 5.6721 0.1349 -0.0010 12 6 6.4150 -0.9867 -0.1406 13 6 5.7734 -2.2484 -0.5320 14 6 4.8598 -2.2718 -1.5938 15 6 4.2556 -3.4540 -1.9558 16 6 4.5536 -4.6287 -1.2731 17 8 3.9550 -5.7908 -1.6335 18 6 2.9956 -5.7178 -2.5766 19 1 2.7915 -4.7777 -3.0678 20 6 2.2697 -6.8501 -2.9169 21 7 2.5184 -7.9947 -2.3192 22 14 0.9389 -6.7487 -4.2239 23 1 1.5311 -7.0313 -5.5562 24 1 -0.1199 -7.7478 -3.9309 25 1 0.3478 -5.3864 -4.2238 26 6 5.4677 -4.6144 -0.2172 27 8 5.7567 -5.7646 0.4472 28 6 6.7010 -5.6765 1.5162 29 6 6.0784 -3.4324 0.1508 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 0.2143 2.3193 0.0005 34 1 1.3310 4.5079 0.0019 35 1 3.7868 4.6501 0.0005 36 1 5.1454 2.6038 0.0111 37 1 6.1571 1.0935 0.1104 38 1 7.4800 -0.9545 0.0358 39 1 4.6267 -1.3614 -2.1260 40 1 3.5488 -3.4700 -2.7721 41 1 2.0111 -8.7865 -2.5574 42 1 6.8400 -6.6622 1.9604 43 1 7.6537 -5.3138 1.1304 44 1 6.3292 -4.9863 2.2734 45 1 6.7852 -3.4198 0.9674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033466985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:46 Heat of formation + Delta-G solvation = -38.985834 kcal Electronic energy + Delta-G solvation = -30845.258617 eV Core-core repulsion = 26568.418166 eV Total energy + Delta-G solvation = -4276.840451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.54857 -39.57768 -38.64105 -37.44250 -37.36634 -35.91729 -33.00665 -32.19953 -31.52648 -30.21714 -29.44160 -28.58838 -27.37917 -26.46750 -25.43077 -24.55925 -22.82030 -21.91741 -21.46120 -20.81373 -18.69480 -18.26819 -17.95959 -17.36582 -16.47766 -16.23278 -15.94059 -15.76926 -15.26145 -15.04457 -14.82419 -14.76158 -14.58857 -14.25491 -14.05539 -13.67401 -13.48040 -13.36538 -13.31363 -13.06159 -12.70562 -12.50691 -12.31010 -12.19354 -11.70810 -11.64219 -11.45842 -11.30136 -11.23452 -11.20564 -10.99935 -10.90635 -10.56462 -10.44116 -10.30072 -9.41455 -9.16897 -9.15426 -9.05010 -8.61649 -8.32228 -7.73388 -6.62081 -6.41611 -3.93429 0.58505 1.24855 1.37563 2.33901 2.63117 3.15316 3.16257 3.21381 3.24297 3.26577 3.97409 3.99149 4.13344 4.33954 4.60835 4.63847 4.73859 4.93813 5.04115 5.08949 5.10237 5.15369 5.22715 5.25830 5.40251 5.42680 5.51671 5.57013 5.64530 5.70244 5.73176 5.79808 5.86437 5.93282 6.05854 6.11035 6.25531 6.31892 6.38486 6.49122 6.56775 6.67103 6.76488 7.04915 7.17991 7.30457 7.34495 7.46884 7.72026 8.00295 8.16549 8.29628 9.02614 9.75453 10.75414 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.003398 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.458433 B = 8237.701868 C =10443.149476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.278 6.278 3 C 0.178 3.822 4 C -0.227 4.227 5 C -0.059 4.059 6 C -0.177 4.177 7 C -0.042 4.042 8 C -0.187 4.187 9 C 0.405 3.595 10 O -0.409 6.409 11 C -0.280 4.280 12 C 0.032 3.968 13 C -0.159 4.159 14 C -0.020 4.020 15 C -0.216 4.216 16 C 0.152 3.848 17 O -0.157 6.157 18 C -0.387 4.387 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.853 5.853 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C 0.041 3.959 27 O -0.305 6.305 28 C 0.032 3.968 29 C -0.135 4.135 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.270 0.730 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 21.486 5.501 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.188 6.188 3 C 0.130 3.870 4 C -0.246 4.246 5 C -0.077 4.077 6 C -0.195 4.195 7 C -0.060 4.060 8 C -0.189 4.189 9 C 0.285 3.715 10 O -0.285 6.285 11 C -0.299 4.299 12 C 0.013 3.987 13 C -0.160 4.160 14 C -0.039 4.039 15 C -0.236 4.236 16 C 0.096 3.904 17 O -0.059 6.059 18 C -0.464 4.464 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.487 5.487 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.004 4.004 27 O -0.219 6.219 28 C -0.063 4.063 29 C -0.154 4.154 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.911 19.990 5.528 20.828 hybrid contribution -0.801 0.804 -0.423 1.211 sum 1.110 20.794 5.105 21.440 Atomic orbital electron populations 1.23169 0.78718 1.04633 1.00797 1.86417 1.20790 1.25308 1.86313 1.19332 0.91613 0.84873 0.91192 1.21258 1.00268 0.92289 1.10739 1.21082 0.94794 0.96883 0.94957 1.20994 0.93830 0.98482 1.06195 1.21288 1.00195 0.90598 0.93908 1.20292 0.91030 0.96422 1.11176 1.18951 0.89300 0.87625 0.75664 1.90906 1.74976 1.28619 1.34026 1.22275 0.95217 0.99080 1.13315 1.22491 0.98335 0.91672 0.86168 1.18063 1.04607 0.91691 1.01672 1.20526 0.92451 0.96034 0.94839 1.20731 1.06288 0.91762 1.04773 1.18811 0.92594 0.87324 0.91646 1.83972 1.45474 1.25036 1.51411 1.21437 1.12274 0.97645 1.14997 0.88897 1.25327 0.98255 0.94356 0.98610 1.70049 1.39218 0.99739 1.39716 0.85717 0.79470 0.78654 0.79642 1.19817 1.20216 1.19096 1.17916 1.01054 0.85697 0.95720 1.86220 1.59884 1.29839 1.45951 1.22852 0.91653 1.02643 0.89199 1.20659 1.02147 0.91058 1.01543 0.87684 0.92831 0.92709 0.85166 0.85740 0.85635 0.84597 0.85815 0.86157 0.88142 0.85045 0.91963 0.89239 0.93732 0.93737 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.28 -4.45 8.57 -40.55 -0.35 -4.80 16 3 C 0.18 2.52 6.70 -38.69 -0.26 2.26 16 4 C -0.23 -2.46 9.03 -39.48 -0.36 -2.82 16 5 C -0.06 -0.53 10.03 -39.52 -0.40 -0.93 16 6 C -0.18 -1.57 10.02 -39.62 -0.40 -1.97 16 7 C -0.04 -0.44 9.43 -39.19 -0.37 -0.80 16 8 C -0.19 -2.63 5.89 -104.77 -0.62 -3.25 16 9 C 0.40 6.59 6.06 -34.37 -0.21 6.38 16 10 O -0.41 -8.39 11.00 -16.75 -0.18 -8.57 16 11 C -0.28 -3.74 9.24 -39.27 -0.36 -4.10 16 12 C 0.03 0.46 9.78 -37.16 -0.36 0.10 16 13 C -0.16 -3.00 4.38 -105.04 -0.46 -3.46 16 14 C -0.02 -0.41 6.70 -39.11 -0.26 -0.67 16 15 C -0.22 -5.11 9.14 -39.49 -0.36 -5.48 16 16 C 0.15 3.98 6.67 -38.73 -0.26 3.72 16 17 O -0.16 -4.75 9.52 -13.78 -0.13 -4.88 16 18 C -0.39 -11.25 9.48 30.92 0.29 -10.95 16 19 H 0.09 2.50 5.19 -52.48 -0.27 2.23 16 20 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 21 N -0.85 -25.70 13.67 55.48 0.76 -24.94 16 22 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C 0.04 0.96 6.70 -39.12 -0.26 0.70 16 27 O -0.30 -7.03 10.28 -34.17 -0.35 -7.38 16 28 C 0.03 0.52 9.81 101.05 0.99 1.51 16 29 C -0.13 -2.65 8.78 -38.98 -0.34 -2.99 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 32 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 33 H 0.13 1.14 6.30 -52.49 -0.33 0.80 16 34 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.14 1.06 6.22 -52.49 -0.33 0.74 16 37 H 0.12 1.18 6.27 -52.48 -0.33 0.85 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.10 1.92 7.28 -52.49 -0.38 1.54 16 40 H 0.13 3.09 5.62 -52.49 -0.29 2.79 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 44 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 45 H 0.12 1.90 6.28 -52.48 -0.33 1.57 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -36.66 379.62 -7.76 -44.42 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.10 Total: 4.98 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.10 Total: -20.49 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.76 Total: -24.94 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.01 Total: -25.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.66 -7.76 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033466985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.430 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds