Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35662 * 117.00233 * 2 1 4 4 C 1.38676 * 120.15117 * 0.02562 * 3 2 1 5 5 C 1.38082 * 120.08624 * 179.97438 * 4 3 2 6 6 C 1.38572 * 120.39378 * 0.02562 * 5 4 3 7 7 C 1.37783 * 120.29503 * 359.67789 * 6 5 4 8 8 C 1.39719 * 119.90934 * 0.59639 * 7 6 5 9 9 C 1.47640 * 120.19514 * 179.69690 * 8 7 6 10 10 O 1.21793 * 119.99904 * 179.72765 * 9 8 7 11 11 C 1.41834 * 119.99806 * 359.73340 * 9 8 7 12 12 C 1.35255 * 120.00004 * 186.81215 * 11 9 8 13 13 C 1.46852 * 120.00123 * 11.01038 * 12 11 9 14 14 C 1.40099 * 120.08218 * 46.40743 * 13 12 11 15 15 C 1.37612 * 119.99984 * 180.25278 * 14 13 12 16 16 C 1.39095 * 120.16146 * 359.74956 * 15 14 13 17 17 O 1.35588 * 119.91714 * 179.97438 * 16 15 14 18 18 C 1.34729 * 117.00242 * 354.15602 * 17 16 15 19 19 H 1.08009 * 120.00011 * 5.06941 * 18 17 16 20 20 C 1.38737 * 120.00578 * 185.07080 * 18 17 16 21 21 N 1.31503 * 119.99598 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47067 * 89.99852 * 22 20 18 24 24 H 1.48499 * 109.47397 * 209.99803 * 22 20 18 25 25 H 1.48500 * 109.46943 * 330.00153 * 22 20 18 26 26 C 1.39665 * 120.16739 * 359.97438 * 16 15 14 27 27 O 1.35942 * 119.99743 * 180.02562 * 26 16 15 28 28 C 1.42902 * 116.99888 * 179.97438 * 27 26 16 29 29 C 1.38040 * 119.99782 * 359.97438 * 26 16 15 30 30 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46784 * 300.00465 * 1 2 3 32 32 H 1.09001 * 109.46582 * 59.99858 * 1 2 3 33 33 H 1.07993 * 119.95659 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.80949 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.84896 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.04749 * 180.32741 * 7 6 5 37 37 H 1.08007 * 120.00201 * 6.80514 * 11 9 8 38 38 H 1.08001 * 119.99988 * 191.01491 * 12 11 9 39 39 H 1.07998 * 120.00582 * 0.02562 * 14 13 12 40 40 H 1.07994 * 119.92583 * 179.77205 * 15 14 13 41 41 H 0.97005 * 119.99756 * 180.02562 * 21 20 18 42 42 H 1.09006 * 109.47393 * 179.97438 * 28 27 26 43 43 H 1.08994 * 109.47437 * 300.00476 * 28 27 26 44 44 H 1.08998 * 109.46620 * 60.00727 * 28 27 26 45 45 H 1.08006 * 120.07652 * 179.97438 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2928 2.3738 0.0005 5 6 1.9212 3.6034 0.0011 6 6 3.3046 3.6838 0.0005 7 6 4.0675 2.5365 0.0062 8 6 3.4448 1.2857 -0.0002 9 6 4.2562 0.0523 -0.0010 10 8 3.7096 -1.0361 -0.0015 11 6 5.6721 0.1349 -0.0010 12 6 6.4150 -0.9867 -0.1406 13 6 5.7734 -2.2484 -0.5320 14 6 4.8598 -2.2718 -1.5938 15 6 4.2556 -3.4540 -1.9558 16 6 4.5536 -4.6287 -1.2731 17 8 3.9550 -5.7908 -1.6335 18 6 2.9956 -5.7178 -2.5766 19 1 2.7915 -4.7777 -3.0678 20 6 2.2697 -6.8501 -2.9169 21 7 2.5184 -7.9947 -2.3192 22 14 0.9389 -6.7487 -4.2239 23 1 1.5311 -7.0313 -5.5562 24 1 -0.1199 -7.7478 -3.9309 25 1 0.3478 -5.3864 -4.2238 26 6 5.4677 -4.6144 -0.2172 27 8 5.7567 -5.7646 0.4472 28 6 6.7010 -5.6765 1.5162 29 6 6.0784 -3.4324 0.1508 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 0.2143 2.3193 0.0005 34 1 1.3310 4.5079 0.0019 35 1 3.7868 4.6501 0.0005 36 1 5.1454 2.6038 0.0111 37 1 6.1571 1.0935 0.1104 38 1 7.4800 -0.9545 0.0358 39 1 4.6267 -1.3614 -2.1260 40 1 3.5488 -3.4700 -2.7721 41 1 2.0111 -8.7865 -2.5574 42 1 6.8400 -6.6622 1.9604 43 1 7.6537 -5.3138 1.1304 44 1 6.3292 -4.9863 2.2734 45 1 6.7852 -3.4198 0.9674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033466985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = -62.258691 kcal Electronic energy + Delta-G solvation = -30846.267804 eV Core-core repulsion = 26568.418166 eV Total energy + Delta-G solvation = -4277.849638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.135 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.63399 -41.14980 -39.94909 -39.24941 -38.27538 -37.54383 -34.57661 -33.97729 -32.53738 -31.16326 -31.01793 -30.09607 -28.34301 -27.83658 -27.37174 -25.81103 -23.93682 -23.22079 -22.91222 -22.11856 -19.99359 -19.89096 -19.31436 -18.88845 -17.79207 -17.58996 -17.08436 -16.82095 -16.76154 -16.62534 -16.36661 -15.91087 -15.66577 -15.60821 -15.37259 -15.22066 -15.15392 -14.96830 -14.46986 -14.19869 -14.07296 -13.81057 -13.52093 -13.43270 -13.13507 -13.00111 -12.84812 -12.72369 -12.59208 -12.42866 -12.18370 -12.15149 -12.05162 -11.95037 -11.77865 -11.36375 -10.88321 -10.42560 -10.20429 -9.98005 -9.44305 -9.18311 -8.47731 -8.36709 -6.11024 -0.48804 0.22395 0.47649 0.63492 1.05181 1.30568 1.42124 1.49497 2.16194 2.26205 2.36816 2.59992 2.82557 2.99585 3.13515 3.36046 3.44580 3.81266 3.91938 3.97812 4.06236 4.19679 4.22024 4.28017 4.30751 4.33336 4.39345 4.43487 4.50421 4.57283 4.60516 4.63340 4.69749 4.72104 4.74631 4.95830 4.99912 5.08399 5.13111 5.23550 5.37860 5.43844 5.49901 5.53593 5.60114 5.82779 5.84990 5.95319 6.03783 6.45014 6.67090 6.96142 6.98119 7.79920 8.76130 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.003398 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.458433 B = 8237.701868 C =10443.149476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.146 3.854 4 C -0.234 4.234 5 C -0.051 4.051 6 C -0.171 4.171 7 C -0.035 4.035 8 C -0.224 4.224 9 C 0.394 3.606 10 O -0.468 6.468 11 C -0.249 4.249 12 C 0.014 3.986 13 C -0.123 4.123 14 C -0.031 4.031 15 C -0.219 4.219 16 C 0.096 3.904 17 O -0.218 6.218 18 C -0.415 4.415 19 H 0.096 0.904 20 C -0.022 4.022 21 N -0.917 5.917 22 Si 1.019 2.981 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.257 1.257 26 C 0.030 3.970 27 O -0.347 6.347 28 C 0.022 3.978 29 C -0.135 4.135 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.273 0.727 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 27.623 6.511 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.099 3.901 4 C -0.253 4.253 5 C -0.069 4.069 6 C -0.189 4.189 7 C -0.053 4.053 8 C -0.226 4.226 9 C 0.277 3.723 10 O -0.348 6.348 11 C -0.267 4.267 12 C -0.004 4.004 13 C -0.124 4.124 14 C -0.049 4.049 15 C -0.239 4.239 16 C 0.045 3.955 17 O -0.124 6.124 18 C -0.491 4.491 19 H 0.113 0.887 20 C -0.220 4.220 21 N -0.555 5.555 22 Si 0.838 3.162 23 H -0.183 1.183 24 H -0.191 1.191 25 H -0.181 1.181 26 C -0.014 4.014 27 O -0.262 6.262 28 C -0.073 4.073 29 C -0.153 4.153 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.195 0.805 38 H 0.192 0.808 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.944 26.220 6.566 27.316 hybrid contribution -1.205 -0.486 -0.447 1.374 sum 2.739 25.734 6.119 26.593 Atomic orbital electron populations 1.23308 0.77259 1.04650 1.02525 1.86345 1.22733 1.27363 1.87033 1.19772 0.92393 0.85186 0.92780 1.21514 1.01101 0.92062 1.10595 1.21588 0.95598 0.97193 0.92503 1.21484 0.93769 0.99559 1.04053 1.21652 1.01873 0.89386 0.92391 1.20382 0.91083 0.96924 1.14173 1.19762 0.91024 0.87765 0.73730 1.90911 1.76272 1.30763 1.36848 1.22753 0.93575 1.00963 1.09426 1.22800 1.00844 0.89106 0.87617 1.18709 1.01158 0.93849 0.98651 1.20679 0.93164 0.95064 0.96040 1.20796 1.06293 0.92523 1.04264 1.19435 0.94568 0.87434 0.94028 1.83938 1.47773 1.27073 1.53639 1.21846 1.13255 0.98320 1.15721 0.88667 1.26633 1.00652 0.93525 1.01171 1.70199 1.41687 1.00763 1.42827 0.84601 0.75999 0.79127 0.76487 1.18310 1.19127 1.18068 1.18284 1.00684 0.87261 0.95200 1.86165 1.61819 1.30485 1.47751 1.23251 0.91437 1.04661 0.87927 1.21138 1.02186 0.89728 1.02285 0.88669 0.90807 0.91140 0.83730 0.82333 0.81912 0.81480 0.80467 0.80837 0.86828 0.86544 0.91779 0.87352 0.91110 0.92137 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.32 -10.81 8.57 -68.88 -0.59 -11.40 16 3 C 0.15 4.03 6.70 22.85 0.15 4.19 16 4 C -0.23 -4.54 9.03 22.34 0.20 -4.34 16 5 C -0.05 -0.69 10.03 22.31 0.22 -0.46 16 6 C -0.17 -2.07 10.02 22.24 0.22 -1.85 16 7 C -0.04 -0.56 9.43 22.52 0.21 -0.35 16 8 C -0.22 -5.77 5.89 -19.96 -0.12 -5.89 16 9 C 0.39 12.04 6.06 25.64 0.16 12.19 16 10 O -0.47 -19.46 11.00 16.25 0.18 -19.28 16 11 C -0.25 -5.38 9.24 22.47 0.21 -5.17 16 12 C 0.01 0.34 9.78 23.84 0.23 0.57 16 13 C -0.12 -4.41 4.38 -20.13 -0.09 -4.50 16 14 C -0.03 -1.31 6.70 22.57 0.15 -1.16 16 15 C -0.22 -11.23 9.14 22.33 0.20 -11.02 16 16 C 0.10 5.50 6.67 22.82 0.15 5.65 16 17 O -0.22 -14.60 9.52 -5.97 -0.06 -14.65 16 18 C -0.42 -26.53 9.48 67.94 0.64 -25.89 16 19 H 0.10 5.69 5.19 -2.91 -0.02 5.67 16 20 C -0.02 -1.36 5.49 84.86 0.47 -0.89 16 21 N -0.92 -59.97 13.67 21.63 0.30 -59.67 16 22 Si 1.02 45.96 29.55 68.60 2.03 47.99 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 C 0.03 1.50 6.70 22.57 0.15 1.65 16 27 O -0.35 -16.79 10.28 -78.93 -0.81 -17.60 16 28 C 0.02 0.67 9.81 113.37 1.11 1.79 16 29 C -0.13 -5.13 8.78 22.66 0.20 -4.93 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 32 H 0.07 1.34 7.66 -2.39 -0.02 1.33 16 33 H 0.15 2.22 6.30 -2.91 -0.02 2.20 16 34 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.17 1.43 6.22 -2.91 -0.02 1.41 16 37 H 0.18 1.97 6.27 -2.91 -0.02 1.95 16 38 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.11 4.39 7.28 -2.91 -0.02 4.37 16 40 H 0.12 6.09 5.62 -2.91 -0.02 6.08 16 41 H 0.27 16.22 8.31 -92.70 -0.77 15.45 16 42 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 43 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 44 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 45 H 0.16 4.61 6.28 -2.91 -0.02 4.59 16 Total: -1.00 -95.11 379.62 7.68 -87.42 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.04 Total: 26.10 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 5.60 Total: -38.90 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.30 Total: -59.67 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.28 Total: -62.94 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -95.11 7.68 -87.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033466985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.165 kcal (2) G-P(sol) polarization free energy of solvation -95.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds