Wall clock time and date at job start Tue Mar 31 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35723 * 116.99771 * 2 1 4 4 C 1.39018 * 119.91122 * 179.97438 * 3 2 1 5 5 C 1.37691 * 120.09084 * 180.02562 * 4 3 2 6 6 C 1.39766 * 119.90941 * 359.97438 * 5 4 3 7 7 C 1.47695 * 120.08615 * 179.97438 * 6 5 4 8 8 O 1.21790 * 119.99925 * 0.02562 * 7 6 5 9 9 C 1.41807 * 119.99817 * 179.97438 * 7 6 5 10 10 C 1.35271 * 120.00024 * 186.82403 * 9 7 6 11 11 C 1.46848 * 119.99935 * 11.08038 * 10 9 7 12 12 C 1.40103 * 120.08313 * 46.24164 * 11 10 9 13 13 C 1.37607 * 119.99369 * 180.02562 * 12 11 10 14 14 C 1.39096 * 120.16564 * 359.97438 * 13 12 11 15 15 O 1.35595 * 119.91406 * 180.02562 * 14 13 12 16 16 C 1.34737 * 116.99874 * 354.14034 * 15 14 13 17 17 H 1.08001 * 120.00225 * 5.07776 * 16 15 14 18 18 C 1.38738 * 119.99786 * 185.07515 * 16 15 14 19 19 N 1.31499 * 120.00435 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00046 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47149 * 90.00288 * 20 18 16 22 22 H 1.48494 * 109.47470 * 209.99999 * 20 18 16 23 23 H 1.48493 * 109.47408 * 330.00489 * 20 18 16 24 24 C 1.39648 * 120.16663 * 359.97438 * 14 13 12 25 25 O 1.35954 * 119.99889 * 180.02562 * 24 14 13 26 26 C 1.42898 * 117.00129 * 180.02562 * 25 24 14 27 27 C 1.38043 * 120.00424 * 0.04637 * 24 14 13 28 28 C 1.39762 * 119.82159 * 0.25033 * 6 5 4 29 29 C 1.37693 * 119.91074 * 359.51265 * 28 6 5 30 30 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47055 * 299.99847 * 1 2 3 32 32 H 1.09003 * 109.47123 * 59.99807 * 1 2 3 33 33 H 1.08003 * 119.95059 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.04281 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.00212 * 6.82492 * 9 7 6 36 36 H 1.08000 * 119.99693 * 191.07419 * 10 9 7 37 37 H 1.07997 * 120.00250 * 0.27501 * 12 11 10 38 38 H 1.08000 * 119.91712 * 180.02562 * 13 12 11 39 39 H 0.96992 * 120.00132 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.47217 * 180.02562 * 26 25 24 41 41 H 1.08997 * 109.47101 * 300.00077 * 26 25 24 42 42 H 1.09003 * 109.46958 * 60.00422 * 26 25 24 43 43 H 1.08005 * 120.08017 * 180.02562 * 27 24 14 44 44 H 1.07999 * 120.04399 * 179.72485 * 28 6 5 45 45 H 1.07995 * 119.95521 * 180.20931 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4335 1.2800 0.0005 5 6 4.0624 2.5049 0.0011 6 6 3.3030 3.6782 0.0005 7 6 3.9735 4.9942 0.0017 8 8 5.1898 5.0579 0.0026 9 6 3.2012 6.1834 0.0006 10 6 3.8085 7.3842 -0.1376 11 6 5.2226 7.4512 -0.5278 12 6 5.6966 6.6671 -1.5877 13 6 7.0222 6.7309 -1.9514 14 6 7.8943 7.5731 -1.2696 15 8 9.1994 7.6323 -1.6326 16 6 9.6115 6.7645 -2.5772 17 1 8.8967 6.1203 -3.0675 18 6 10.9543 6.6984 -2.9201 19 7 11.3566 5.8518 -3.8424 20 14 12.1906 7.8132 -2.0727 21 1 12.7218 7.1343 -0.8634 22 1 13.3081 8.1114 -3.0039 23 1 11.5248 9.0801 -1.6767 24 6 7.4289 8.3584 -0.2128 25 8 8.2842 9.1808 0.4510 26 6 7.7402 9.9549 1.5218 27 6 6.1006 8.2995 0.1582 28 6 1.9074 3.6028 0.0047 29 6 1.2862 2.3740 -0.0007 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 4.0196 0.3728 0.0014 34 1 5.1411 2.5589 0.0019 35 1 2.1280 6.1305 0.1101 36 1 3.2533 8.2936 0.0390 37 1 5.0208 6.0156 -2.1218 38 1 7.3861 6.1262 -2.7689 39 1 12.2952 5.8060 -4.0823 40 1 8.5267 10.5661 1.9645 41 1 6.9508 10.6014 1.1382 42 1 7.3279 9.2882 2.2792 43 1 5.7393 8.9067 0.9751 44 1 1.3171 4.5072 0.0088 45 1 0.2078 2.3150 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033472629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:50 Heat of formation + Delta-G solvation = -41.541866 kcal Electronic energy + Delta-G solvation = -29958.465268 eV Core-core repulsion = 25681.513980 eV Total energy + Delta-G solvation = -4276.951289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.57100 -39.88334 -39.19540 -37.67739 -37.29988 -36.05701 -33.17196 -32.34507 -31.45757 -30.64783 -29.59769 -28.84685 -27.78230 -26.61109 -25.41547 -24.30069 -23.09333 -22.11317 -21.52927 -20.80376 -18.81210 -18.56451 -17.92600 -17.67318 -16.81528 -16.47516 -16.11322 -16.08509 -15.40865 -15.23782 -15.02970 -14.68309 -14.49606 -14.10461 -13.94677 -13.91198 -13.76999 -13.60531 -13.32857 -13.15976 -12.89266 -12.72137 -12.65197 -12.26020 -12.17197 -12.11894 -11.59173 -11.50937 -11.31227 -11.09911 -11.04743 -10.80738 -10.68910 -10.50389 -10.19172 -9.51443 -9.33255 -9.26313 -9.17638 -8.73641 -8.44309 -7.88356 -6.81759 -6.42028 -4.01982 0.50012 1.15738 1.26989 2.18652 2.45883 2.91454 3.14583 3.26543 3.31488 3.49154 3.89437 3.93598 4.28349 4.34594 4.44140 4.49975 4.60397 4.72114 4.75945 4.77014 5.02948 5.06715 5.11233 5.12995 5.18852 5.29694 5.41224 5.45244 5.49215 5.56872 5.62342 5.73625 5.77158 5.79412 5.94576 6.02761 6.12812 6.20786 6.29849 6.33631 6.49347 6.53875 6.63943 6.91295 7.04319 7.05492 7.30609 7.51865 7.67664 7.95896 7.97064 8.16422 8.92821 9.57153 10.64678 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002463 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.254871 B =11365.828598 C =13062.625630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.147 3.853 4 C -0.163 4.163 5 C -0.025 4.025 6 C -0.189 4.189 7 C 0.411 3.589 8 O -0.431 6.431 9 C -0.279 4.279 10 C 0.033 3.967 11 C -0.152 4.152 12 C -0.024 4.024 13 C -0.204 4.204 14 C 0.157 3.843 15 O -0.197 6.197 16 C -0.385 4.385 17 H 0.109 0.891 18 C 0.065 3.935 19 N -0.873 5.873 20 Si 0.904 3.096 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.255 1.255 24 C 0.041 3.959 25 O -0.310 6.310 26 C 0.032 3.968 27 C -0.135 4.135 28 C -0.038 4.038 29 C -0.224 4.224 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.281 0.719 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.073 -3.554 9.458 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.101 3.899 4 C -0.182 4.182 5 C -0.043 4.043 6 C -0.190 4.190 7 C 0.292 3.708 8 O -0.309 6.309 9 C -0.298 4.298 10 C 0.014 3.986 11 C -0.153 4.153 12 C -0.043 4.043 13 C -0.223 4.223 14 C 0.103 3.897 15 O -0.100 6.100 16 C -0.460 4.460 17 H 0.126 0.874 18 C -0.139 4.139 19 N -0.510 5.510 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.179 1.179 24 C -0.004 4.004 25 O -0.225 6.225 26 C -0.064 4.064 27 C -0.154 4.154 28 C -0.056 4.056 29 C -0.243 4.243 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.138 0.862 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.750 -3.649 9.349 23.953 hybrid contribution -0.263 0.303 0.383 0.555 sum -22.013 -3.346 9.732 24.300 Atomic orbital electron populations 1.23094 0.78207 1.04076 1.01530 1.86050 1.21589 1.27107 1.88109 1.19326 0.92442 0.84125 0.94017 1.20446 0.91203 0.98933 1.07609 1.21278 1.01015 0.90341 0.91707 1.20668 0.94015 0.95752 1.08581 1.19089 0.88940 0.88280 0.74443 1.90868 1.15303 1.89060 1.35627 1.22296 1.00459 0.93958 1.13067 1.22534 0.93303 0.96793 0.85933 1.18143 0.92502 1.03303 1.01341 1.20600 0.94560 0.94228 0.94879 1.20881 0.93015 1.04071 1.04343 1.18555 0.85216 0.94102 0.91778 1.83570 1.20584 1.53278 1.52609 1.20869 0.94811 1.16217 1.14140 0.87411 1.24483 0.96762 0.96728 0.95942 1.69621 1.17585 1.34482 1.29335 0.86182 0.79746 0.81990 0.79156 1.19790 1.20824 1.17863 1.17911 0.89166 0.97651 0.95622 1.86164 1.35832 1.54392 1.46069 1.22875 0.99914 0.94567 0.89054 1.20669 0.91648 1.01529 1.01567 1.21205 0.93598 0.97271 0.93566 1.21177 1.00069 0.92235 1.10781 0.88151 0.92487 0.92436 0.84697 0.83931 0.85629 0.85947 0.87768 0.84302 0.90930 0.89179 0.93539 0.93518 0.86248 0.84879 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -3.06 10.49 -18.87 -0.20 -3.26 16 3 C 0.15 1.56 6.70 -39.00 -0.26 1.30 16 4 C -0.16 -1.89 9.97 -39.49 -0.39 -2.28 16 5 C -0.03 -0.33 9.59 -39.21 -0.38 -0.70 16 6 C -0.19 -2.42 5.88 -104.89 -0.62 -3.03 16 7 C 0.41 6.07 6.06 -34.36 -0.21 5.86 16 8 O -0.43 -8.11 12.18 5.11 0.06 -8.05 16 9 C -0.28 -3.38 9.23 -39.28 -0.36 -3.75 16 10 C 0.03 0.43 9.78 -37.16 -0.36 0.07 16 11 C -0.15 -2.65 4.39 -105.04 -0.46 -3.11 16 12 C -0.02 -0.47 6.69 -39.11 -0.26 -0.73 16 13 C -0.20 -4.64 9.14 -39.49 -0.36 -5.00 16 14 C 0.16 3.87 6.67 -38.74 -0.26 3.62 16 15 O -0.20 -5.47 8.35 -13.82 -0.12 -5.58 16 16 C -0.39 -11.14 9.94 30.92 0.31 -10.84 16 17 H 0.11 3.16 5.42 -52.49 -0.28 2.87 16 18 C 0.06 1.86 5.50 -17.51 -0.10 1.77 16 19 N -0.87 -25.53 13.96 55.48 0.77 -24.75 16 20 Si 0.90 22.43 28.62 -169.99 -4.86 17.56 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.25 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.04 0.89 6.70 -39.13 -0.26 0.63 16 25 O -0.31 -6.46 10.28 -34.20 -0.35 -6.82 16 26 C 0.03 0.45 9.81 101.05 0.99 1.44 16 27 C -0.13 -2.43 8.78 -38.98 -0.34 -2.77 16 28 C -0.04 -0.38 9.42 -39.21 -0.37 -0.75 16 29 C -0.22 -2.06 9.01 -39.49 -0.36 -2.42 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 32 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 33 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.14 1.94 7.65 -52.49 -0.40 1.54 16 35 H 0.13 1.07 6.26 -52.49 -0.33 0.74 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.10 1.87 7.28 -52.49 -0.38 1.49 16 38 H 0.14 3.28 5.62 -52.49 -0.29 2.99 16 39 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 42 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 43 H 0.12 1.74 6.28 -52.48 -0.33 1.41 16 44 H 0.13 0.97 6.21 -52.49 -0.33 0.65 16 45 H 0.13 0.84 6.28 -52.49 -0.33 0.51 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -34.40 380.56 -7.11 -41.51 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.09 Total: 3.22 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.06 Total: -19.57 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.77 Total: -24.75 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.60 Total: -23.71 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.86 Total: 17.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.40 -7.11 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033472629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.030 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds