Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35723 * 116.99771 * 2 1 4 4 C 1.39018 * 119.91122 * 179.97438 * 3 2 1 5 5 C 1.37691 * 120.09084 * 180.02562 * 4 3 2 6 6 C 1.39766 * 119.90941 * 359.97438 * 5 4 3 7 7 C 1.47695 * 120.08615 * 179.97438 * 6 5 4 8 8 O 1.21790 * 119.99925 * 0.02562 * 7 6 5 9 9 C 1.41807 * 119.99817 * 179.97438 * 7 6 5 10 10 C 1.35271 * 120.00024 * 186.82403 * 9 7 6 11 11 C 1.46848 * 119.99935 * 11.08038 * 10 9 7 12 12 C 1.40103 * 120.08313 * 46.24164 * 11 10 9 13 13 C 1.37607 * 119.99369 * 180.02562 * 12 11 10 14 14 C 1.39096 * 120.16564 * 359.97438 * 13 12 11 15 15 O 1.35595 * 119.91406 * 180.02562 * 14 13 12 16 16 C 1.34737 * 116.99874 * 354.14034 * 15 14 13 17 17 H 1.08001 * 120.00225 * 5.07776 * 16 15 14 18 18 C 1.38738 * 119.99786 * 185.07515 * 16 15 14 19 19 N 1.31499 * 120.00435 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00046 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47149 * 90.00288 * 20 18 16 22 22 H 1.48494 * 109.47470 * 209.99999 * 20 18 16 23 23 H 1.48493 * 109.47408 * 330.00489 * 20 18 16 24 24 C 1.39648 * 120.16663 * 359.97438 * 14 13 12 25 25 O 1.35954 * 119.99889 * 180.02562 * 24 14 13 26 26 C 1.42898 * 117.00129 * 180.02562 * 25 24 14 27 27 C 1.38043 * 120.00424 * 0.04637 * 24 14 13 28 28 C 1.39762 * 119.82159 * 0.25033 * 6 5 4 29 29 C 1.37693 * 119.91074 * 359.51265 * 28 6 5 30 30 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47055 * 299.99847 * 1 2 3 32 32 H 1.09003 * 109.47123 * 59.99807 * 1 2 3 33 33 H 1.08003 * 119.95059 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.04281 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.00212 * 6.82492 * 9 7 6 36 36 H 1.08000 * 119.99693 * 191.07419 * 10 9 7 37 37 H 1.07997 * 120.00250 * 0.27501 * 12 11 10 38 38 H 1.08000 * 119.91712 * 180.02562 * 13 12 11 39 39 H 0.96992 * 120.00132 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.47217 * 180.02562 * 26 25 24 41 41 H 1.08997 * 109.47101 * 300.00077 * 26 25 24 42 42 H 1.09003 * 109.46958 * 60.00422 * 26 25 24 43 43 H 1.08005 * 120.08017 * 180.02562 * 27 24 14 44 44 H 1.07999 * 120.04399 * 179.72485 * 28 6 5 45 45 H 1.07995 * 119.95521 * 180.20931 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4335 1.2800 0.0005 5 6 4.0624 2.5049 0.0011 6 6 3.3030 3.6782 0.0005 7 6 3.9735 4.9942 0.0017 8 8 5.1898 5.0579 0.0026 9 6 3.2012 6.1834 0.0006 10 6 3.8085 7.3842 -0.1376 11 6 5.2226 7.4512 -0.5278 12 6 5.6966 6.6671 -1.5877 13 6 7.0222 6.7309 -1.9514 14 6 7.8943 7.5731 -1.2696 15 8 9.1994 7.6323 -1.6326 16 6 9.6115 6.7645 -2.5772 17 1 8.8967 6.1203 -3.0675 18 6 10.9543 6.6984 -2.9201 19 7 11.3566 5.8518 -3.8424 20 14 12.1906 7.8132 -2.0727 21 1 12.7218 7.1343 -0.8634 22 1 13.3081 8.1114 -3.0039 23 1 11.5248 9.0801 -1.6767 24 6 7.4289 8.3584 -0.2128 25 8 8.2842 9.1808 0.4510 26 6 7.7402 9.9549 1.5218 27 6 6.1006 8.2995 0.1582 28 6 1.9074 3.6028 0.0047 29 6 1.2862 2.3740 -0.0007 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 4.0196 0.3728 0.0014 34 1 5.1411 2.5589 0.0019 35 1 2.1280 6.1305 0.1101 36 1 3.2533 8.2936 0.0390 37 1 5.0208 6.0156 -2.1218 38 1 7.3861 6.1262 -2.7689 39 1 12.2952 5.8060 -4.0823 40 1 8.5267 10.5661 1.9645 41 1 6.9508 10.6014 1.1382 42 1 7.3279 9.2882 2.2792 43 1 5.7393 8.9067 0.9751 44 1 1.3171 4.5072 0.0088 45 1 0.2078 2.3150 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033472629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = -63.320317 kcal Electronic energy + Delta-G solvation = -29959.409653 eV Core-core repulsion = 25681.513980 eV Total energy + Delta-G solvation = -4277.895673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.135 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62451 -41.20229 -40.39657 -39.36987 -38.26361 -37.50421 -34.66091 -34.18426 -32.37688 -31.57112 -31.18362 -30.19008 -28.44512 -27.84512 -27.25450 -25.51386 -24.02683 -23.33797 -23.10390 -22.00069 -20.11264 -19.81802 -19.35692 -19.20630 -17.98348 -17.79550 -17.14158 -16.92576 -16.70508 -16.67794 -16.33091 -16.03909 -15.64035 -15.61043 -15.38794 -15.31585 -14.91378 -14.84883 -14.72617 -14.31478 -14.12218 -13.97791 -13.78980 -13.62169 -13.48801 -13.12740 -12.86840 -12.80445 -12.74395 -12.59311 -12.08954 -12.06052 -11.99165 -11.93143 -11.71178 -11.46531 -10.98575 -10.56293 -10.32194 -10.09977 -9.51903 -9.23872 -8.52705 -8.46276 -6.19962 -0.56536 0.18311 0.32966 0.58380 0.98438 1.26910 1.32958 1.51237 2.15582 2.27575 2.28290 2.53749 2.74825 2.92915 2.97705 3.13868 3.34663 3.70754 3.86725 3.88585 4.02404 4.16261 4.19001 4.31221 4.34714 4.38840 4.42653 4.45588 4.46455 4.54697 4.57778 4.63327 4.69696 4.73935 4.76074 4.91912 4.97692 5.06755 5.11424 5.21496 5.26999 5.37298 5.47031 5.55851 5.58413 5.65756 5.80142 5.82596 6.04537 6.35434 6.62312 6.81657 6.85541 7.59402 8.59168 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002463 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.254871 B =11365.828598 C =13062.625630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.148 3.852 4 C -0.181 4.181 5 C -0.045 4.045 6 C -0.215 4.215 7 C 0.403 3.597 8 O -0.488 6.488 9 C -0.250 4.250 10 C 0.019 3.981 11 C -0.115 4.115 12 C -0.038 4.038 13 C -0.212 4.212 14 C 0.101 3.899 15 O -0.234 6.234 16 C -0.398 4.398 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.261 1.261 23 H -0.266 1.266 24 C 0.042 3.958 25 O -0.344 6.344 26 C 0.019 3.981 27 C -0.134 4.134 28 C -0.023 4.023 29 C -0.217 4.217 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.286 0.714 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.168 0.832 44 H 0.173 0.827 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.051 -1.900 12.325 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.102 3.898 4 C -0.199 4.199 5 C -0.064 4.064 6 C -0.216 4.216 7 C 0.288 3.712 8 O -0.369 6.369 9 C -0.268 4.268 10 C 0.001 3.999 11 C -0.115 4.115 12 C -0.056 4.056 13 C -0.231 4.231 14 C 0.051 3.949 15 O -0.142 6.142 16 C -0.475 4.475 17 H 0.097 0.903 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.191 1.191 24 C -0.003 4.003 25 O -0.260 6.260 26 C -0.075 4.075 27 C -0.152 4.152 28 C -0.041 4.041 29 C -0.235 4.235 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.198 0.802 36 H 0.196 0.804 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.185 0.815 44 H 0.190 0.810 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -27.814 -1.993 12.246 30.455 hybrid contribution 0.922 -0.395 -0.252 1.034 sum -26.892 -2.388 11.994 29.542 Atomic orbital electron populations 1.23460 0.75743 1.05895 1.02906 1.86043 1.24147 1.26777 1.87665 1.19463 0.92099 0.85354 0.92909 1.20488 0.92490 0.98409 1.08561 1.21181 1.00121 0.91744 0.93322 1.20644 0.95569 0.94424 1.10954 1.19836 0.88496 0.90300 0.72550 1.90881 1.17778 1.89879 1.38378 1.22746 1.02670 0.91861 1.09517 1.22866 0.90434 0.99544 0.87036 1.18782 0.95284 0.99298 0.98177 1.20737 0.93201 0.95373 0.96307 1.20851 0.94766 1.03747 1.03762 1.19147 0.84641 0.96779 0.94310 1.83515 1.22377 1.54422 1.53840 1.20757 0.94897 1.16814 1.15004 0.90308 1.25244 0.98258 0.98319 0.96814 1.69698 1.18215 1.36745 1.31465 0.85245 0.77728 0.79434 0.78465 1.19387 1.18502 1.19054 1.18176 0.90597 0.96900 0.94615 1.86122 1.37341 1.54807 1.47718 1.23306 1.01675 0.94748 0.87765 1.21191 0.89951 1.01789 1.02294 1.21568 0.92069 0.99137 0.91320 1.21580 1.01821 0.91129 1.08975 0.86424 0.90878 0.91080 0.84748 0.86609 0.80210 0.80396 0.86682 0.87266 0.90474 0.87060 0.91001 0.91888 0.81517 0.80951 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.68 10.49 -90.45 -0.95 -6.63 16 3 C 0.15 2.83 6.70 22.64 0.15 2.98 16 4 C -0.18 -4.24 9.97 22.33 0.22 -4.02 16 5 C -0.05 -1.22 9.59 22.51 0.22 -1.01 16 6 C -0.21 -5.10 5.88 -20.04 -0.12 -5.22 16 7 C 0.40 11.03 6.06 25.65 0.16 11.18 16 8 O -0.49 -18.63 12.18 -4.64 -0.06 -18.69 16 9 C -0.25 -4.59 9.23 22.47 0.21 -4.38 16 10 C 0.02 0.39 9.78 23.84 0.23 0.62 16 11 C -0.11 -3.71 4.39 -20.13 -0.09 -3.80 16 12 C -0.04 -1.50 6.69 22.57 0.15 -1.35 16 13 C -0.21 -10.53 9.14 22.33 0.20 -10.33 16 14 C 0.10 5.34 6.67 22.82 0.15 5.49 16 15 O -0.23 -14.18 8.35 -6.12 -0.05 -14.23 16 16 C -0.40 -25.46 9.94 67.94 0.68 -24.79 16 17 H 0.08 5.26 5.42 -2.91 -0.02 5.25 16 18 C 0.01 0.75 5.50 84.86 0.47 1.22 16 19 N -0.92 -57.92 13.96 21.63 0.30 -57.62 16 20 Si 0.97 49.29 28.62 68.60 1.96 51.25 16 21 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.27 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.04 1.84 6.70 22.56 0.15 1.99 16 25 O -0.34 -14.35 10.28 -79.06 -0.81 -15.17 16 26 C 0.02 0.49 9.81 113.37 1.11 1.60 16 27 C -0.13 -4.47 8.78 22.66 0.20 -4.27 16 28 C -0.02 -0.35 9.42 22.51 0.21 -0.14 16 29 C -0.22 -2.99 9.01 22.33 0.20 -2.79 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.30 7.65 -2.39 -0.02 0.28 16 32 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 33 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.12 3.61 7.65 -2.91 -0.02 3.59 16 35 H 0.18 1.44 6.26 -2.91 -0.02 1.42 16 36 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.12 4.22 7.28 -2.91 -0.02 4.20 16 38 H 0.11 5.93 5.62 -2.91 -0.02 5.92 16 39 H 0.29 16.40 8.31 -92.71 -0.77 15.63 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 42 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 43 H 0.17 3.95 6.28 -2.91 -0.02 3.93 16 44 H 0.17 1.14 6.21 -2.91 -0.02 1.13 16 45 H 0.17 1.06 6.28 -2.91 -0.02 1.04 16 Total: -1.00 -87.97 380.56 7.06 -80.92 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.04 Total: 15.95 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 5.62 Total: -35.79 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.30 Total: -57.62 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -1.87 Total: -54.72 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.96 Total: 51.25 kcal Total: -87.97 7.06 -80.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033472629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.598 kcal (2) G-P(sol) polarization free energy of solvation -87.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds