Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00374 * 2 1 4 4 C 1.38726 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00327 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.99835 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00093 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99538 * 0.02562 * 6 5 4 10 10 S 1.76204 * 119.99342 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45719 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53891 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99603 * 10 9 6 14 14 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 15 15 C 1.50703 * 109.46907 * 94.99986 * 14 13 10 16 16 H 1.08001 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99988 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47095 * 89.99712 * 19 17 15 21 21 H 1.48503 * 109.47222 * 210.00135 * 19 17 15 22 22 H 1.48505 * 109.46886 * 329.99965 * 19 17 15 23 23 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 24 24 C 1.53003 * 109.47161 * 95.00088 * 23 13 10 25 25 C 1.47199 * 109.47646 * 179.97438 * 24 23 13 26 26 N 9.03708 * 161.16791 * 149.54173 * 3 1 2 27 27 C 1.38146 * 120.00351 * 0.22758 * 9 6 5 28 28 H 1.09000 * 109.46877 * 300.00122 * 1 2 3 29 29 H 1.08995 * 109.47121 * 59.99813 * 1 2 3 30 30 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99562 * 359.97438 * 4 3 2 32 32 H 1.07991 * 120.00532 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47553 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47473 * 300.00600 * 8 7 6 35 35 H 1.08997 * 109.47016 * 60.00394 * 8 7 6 36 36 H 1.09001 * 109.47378 * 214.99601 * 14 13 10 37 37 H 1.09002 * 109.46925 * 335.00342 * 14 13 10 38 38 H 0.97003 * 120.00349 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47764 * 215.00207 * 23 13 10 40 40 H 1.09003 * 109.47361 * 335.00581 * 23 13 10 41 41 H 1.09005 * 109.47081 * 300.00493 * 24 23 13 42 42 H 1.09003 * 109.46581 * 60.00015 * 24 23 13 43 43 H 1.07996 * 120.00165 * 179.72447 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3033 3.6782 -0.0005 7 8 3.9206 4.8897 -0.0005 8 6 3.0807 6.0458 0.0006 9 6 4.0585 2.5150 -0.0011 10 16 5.8181 2.6073 -0.0024 11 8 6.2901 1.2674 -0.0374 12 8 6.1724 3.5296 1.0188 13 7 6.2716 3.3003 -1.4364 14 6 6.5319 2.4586 -2.6068 15 6 5.2879 2.3771 -3.4535 16 1 4.3928 2.8996 -3.1499 17 6 5.2921 1.6345 -4.6153 18 7 6.3817 0.9970 -4.9843 19 14 3.7500 1.5327 -5.6645 20 1 3.7561 2.6332 -6.6616 21 1 3.7162 0.2261 -6.3695 22 1 2.5516 1.6580 -4.7964 23 6 6.4123 4.7552 -1.5345 24 6 7.8746 5.1428 -1.3051 25 6 8.0162 6.6046 -1.4043 26 7 8.1255 7.7328 -1.4787 27 6 3.4313 1.2842 -0.0058 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2124 2.3185 0.0005 32 1 1.3298 4.5113 0.0000 33 1 3.6985 6.9438 0.0000 34 1 2.4506 6.0381 -0.8888 35 1 2.4523 6.0374 0.8911 36 1 7.3424 2.8918 -3.1929 37 1 6.8147 1.4582 -2.2792 38 1 6.3848 0.4749 -5.8018 39 1 6.1005 5.0845 -2.5257 40 1 5.7873 5.2325 -0.7798 41 1 8.1865 4.8135 -0.3139 42 1 8.4996 4.6655 -2.0598 43 1 4.0194 0.3784 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033598170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -84.206133 kcal Electronic energy + Delta-G solvation = -30772.386124 eV Core-core repulsion = 26525.488382 eV Total energy + Delta-G solvation = -4246.897742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44143 -39.05345 -37.08480 -36.62461 -36.25193 -35.61026 -35.22679 -32.76311 -31.43071 -30.62168 -29.78941 -27.51301 -26.97472 -26.89852 -23.75204 -23.12725 -22.12718 -21.98441 -19.16018 -18.06666 -17.58604 -17.51631 -17.06303 -16.57157 -16.44474 -15.88151 -15.72366 -15.57856 -15.42909 -14.87167 -14.57526 -14.49050 -14.30048 -13.79841 -13.55369 -13.35036 -12.92519 -12.82369 -12.66386 -12.46878 -12.40109 -12.23391 -11.90710 -11.79552 -11.68519 -11.61674 -11.46569 -11.33385 -11.27261 -11.13405 -10.95534 -10.57935 -10.53847 -10.43274 -10.37141 -10.03804 -9.82069 -9.33263 -8.49999 -8.18478 -7.78559 -6.12106 -4.17483 0.82386 1.13167 1.46102 2.95669 3.02363 3.10528 3.23940 3.31496 3.31762 3.33265 3.42302 3.68489 4.23125 4.36614 4.39541 4.60264 4.72548 4.86739 4.97430 5.04240 5.06173 5.10430 5.22847 5.28073 5.33039 5.35363 5.42372 5.42750 5.45718 5.74500 5.79775 5.86731 5.92212 6.04782 6.23870 6.35131 6.42792 6.48439 7.11367 7.25504 7.38900 7.42174 7.55741 7.78306 7.84850 8.12915 8.86785 9.48728 10.96049 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.007749 B = 0.005766 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.573031 B = 4855.009776 C = 6620.042151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.070 3.930 4 C -0.122 4.122 5 C -0.191 4.191 6 C 0.190 3.810 7 O -0.308 6.308 8 C 0.026 3.974 9 C -0.652 4.652 10 S 2.697 3.303 11 O -0.954 6.954 12 O -0.963 6.963 13 N -0.974 5.974 14 C 0.241 3.759 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.134 3.866 24 C -0.055 4.055 25 C 0.226 3.774 26 N -0.455 5.455 27 C -0.003 4.003 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.264 0.736 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 3.855 9.935 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.025 3.975 4 C -0.141 4.141 5 C -0.211 4.211 6 C 0.143 3.857 7 O -0.221 6.221 8 C -0.069 4.069 9 C -0.737 4.737 10 S 2.785 3.215 11 O -0.945 6.945 12 O -0.954 6.954 13 N -0.812 5.812 14 C 0.119 3.881 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.200 1.200 23 C 0.006 3.994 24 C -0.097 4.097 25 C -0.092 4.092 26 N -0.133 5.133 27 C -0.023 4.023 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.097 4.983 10.323 14.634 hybrid contribution -2.389 -0.230 -1.188 2.678 sum -11.486 4.753 9.134 15.425 Atomic orbital electron populations 1.23029 0.78886 1.03922 1.00966 1.86118 1.20872 1.26250 1.89488 1.18862 0.92300 0.84369 1.02019 1.21199 0.99938 0.91869 1.01069 1.20995 0.93128 0.98479 1.08468 1.18128 0.90841 0.84321 0.92409 1.86110 1.35711 1.12324 1.87908 1.23124 0.96037 0.86257 1.01452 1.30319 1.28555 0.95332 1.19476 1.01876 0.73314 0.73347 0.72971 1.93560 1.78410 1.36004 1.86500 1.93542 1.81866 1.64354 1.55597 1.57352 1.81106 1.13344 1.29415 1.19355 0.97262 0.90212 0.81266 1.21520 0.98174 1.30958 1.07196 0.92061 1.24886 0.96071 0.95131 0.97480 1.69910 1.27157 1.31470 1.24085 0.86641 0.83637 0.77523 0.80509 1.20660 1.21044 1.19966 1.21074 0.92772 0.81030 1.04531 1.19943 1.01644 0.81964 1.06116 1.29111 0.92721 0.95084 0.92306 1.81158 1.09169 1.12987 1.09944 1.20021 0.91809 0.96845 0.93626 0.92972 0.92807 0.88228 0.84919 0.84689 0.87732 0.92234 0.92451 0.93631 0.92479 0.92572 0.89205 0.89015 0.87001 0.86495 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.54 10.50 -19.68 -0.21 -4.75 16 3 C 0.07 1.10 6.69 -39.24 -0.26 0.84 16 4 C -0.12 -1.62 9.03 -39.45 -0.36 -1.97 16 5 C -0.19 -2.56 9.03 -39.45 -0.36 -2.92 16 6 C 0.19 3.03 6.63 -39.24 -0.26 2.77 16 7 O -0.31 -4.45 6.46 -29.57 -0.19 -4.64 16 8 C 0.03 0.25 9.81 101.05 0.99 1.25 16 9 C -0.65 -11.81 5.92 -39.45 -0.23 -12.04 16 10 S 2.70 51.61 5.24 -107.50 -0.56 51.04 16 11 O -0.95 -20.65 15.52 -57.17 -0.89 -21.54 16 12 O -0.96 -18.31 16.26 -62.54 -1.02 -19.33 16 13 N -0.97 -18.29 2.77 -115.66 -0.32 -18.61 16 14 C 0.24 5.45 5.44 -5.19 -0.03 5.42 16 15 C -0.54 -13.53 9.38 -34.44 -0.32 -13.86 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 19 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.13 2.09 5.09 -4.04 -0.02 2.07 16 24 C -0.05 -0.72 6.02 -29.52 -0.18 -0.90 16 25 C 0.23 3.23 15.43 -20.76 -0.32 2.91 16 26 N -0.45 -7.42 18.54 42.15 0.78 -6.64 16 27 C 0.00 -0.06 9.48 -39.45 -0.37 -0.43 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 32 H 0.14 1.34 6.29 -52.49 -0.33 1.01 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 36 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.06 1.43 6.91 -51.93 -0.36 1.07 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.09 1.35 4.84 -51.93 -0.25 1.10 16 41 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.16 2.80 7.33 -52.49 -0.38 2.41 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -33.05 379.89 -7.12 -40.16 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.32 Total: 0.74 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.83 Total: -13.93 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 1.20 Total: -48.97 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -2.30 Total: -50.26 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.56 Total: 51.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.05 -7.12 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033598170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.043 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds