Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29404 * 1 3 3 Si 1.86801 * 120.00320 * 2 1 4 4 H 1.48492 * 109.47194 * 270.00075 * 3 2 1 5 5 H 1.48495 * 109.47038 * 30.00420 * 3 2 1 6 6 H 1.48501 * 109.46885 * 150.00238 * 3 2 1 7 7 C 1.46566 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99470 * 179.97438 * 7 2 1 9 9 O 1.22307 * 120.00408 * 0.26902 * 7 2 1 10 10 C 1.35569 * 117.00304 * 174.60922 * 9 7 2 11 11 C 1.38761 * 120.15887 * 5.69728 * 10 9 7 12 12 C 1.38101 * 120.07700 * 179.76849 * 11 10 9 13 13 C 1.38539 * 120.41335 * 0.51231 * 12 11 10 14 14 C 1.37884 * 120.33072 * 359.74521 * 13 12 11 15 15 C 1.39694 * 119.90534 * 359.97438 * 14 13 12 16 16 C 1.47266 * 120.20445 * 180.02562 * 15 14 13 17 17 N 1.29881 * 120.00255 * 179.97438 * 16 15 14 18 18 N 1.40099 * 120.00272 * 180.02562 * 17 16 15 19 19 C 1.34772 * 120.00428 * 179.97438 * 18 17 16 20 20 O 1.21593 * 119.99761 * 0.02562 * 19 18 17 21 21 C 1.47787 * 120.00236 * 179.97438 * 19 18 17 22 22 C 1.39626 * 120.14565 * 359.72724 * 21 19 18 23 23 C 1.37933 * 119.84832 * 179.76448 * 22 21 19 24 24 C 1.38385 * 120.14646 * 0.51116 * 23 22 21 25 25 C 1.38350 * 120.29916 * 359.74452 * 24 23 22 26 26 N 1.48015 * 119.92547 * 179.97438 * 25 24 23 27 27 O 1.31699 * 120.00206 * 180.02562 * 26 25 24 28 28 O 1.31705 * 119.99909 * 0.02562 * 26 25 24 29 29 C 1.37964 * 120.14526 * 359.97438 * 25 24 23 30 30 H 0.97001 * 119.99899 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.96585 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.78917 * 180.27765 * 12 11 10 33 33 H 1.08003 * 119.83895 * 179.76571 * 13 12 11 34 34 H 1.07991 * 120.04674 * 179.97438 * 14 13 12 35 35 H 1.08006 * 119.99783 * 359.97438 * 16 15 14 36 36 H 0.97001 * 119.99951 * 0.02562 * 18 17 16 37 37 H 1.07996 * 120.07885 * 0.02562 * 22 21 19 38 38 H 1.07992 * 119.92535 * 180.25120 * 23 22 21 39 39 H 1.08004 * 119.84984 * 179.76384 * 24 23 22 40 40 H 1.08008 * 120.06925 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2940 0.0000 0.0000 3 14 2.2281 1.6177 0.0000 4 1 2.4756 2.0464 -1.4000 5 1 1.4257 2.6526 0.7001 6 1 3.5257 1.4400 0.7000 7 6 2.0267 -1.2694 -0.0006 8 1 3.1068 -1.2694 -0.0010 9 8 1.4152 -2.3286 -0.0060 10 6 2.1493 -3.4626 -0.1197 11 6 3.5354 -3.4002 -0.1046 12 6 4.2815 -4.5570 -0.2157 13 6 3.6552 -5.7850 -0.3534 14 6 2.2790 -5.8661 -0.3758 15 6 1.5109 -4.7052 -0.2586 16 6 0.0405 -4.7842 -0.2812 17 7 -0.6698 -3.7024 -0.1714 18 7 -2.0686 -3.7776 -0.1923 19 6 -2.8057 -2.6551 -0.0779 20 8 -2.2566 -1.5770 0.0430 21 6 -4.2812 -2.7345 -0.1005 22 6 -4.9148 -3.9702 -0.2461 23 6 -6.2924 -4.0377 -0.2615 24 6 -7.0462 -2.8831 -0.1438 25 6 -6.4247 -1.6549 -0.0047 26 7 -7.2390 -0.4252 0.1200 27 8 -6.6489 0.7448 0.2520 28 8 -8.5537 -0.5010 0.0989 29 6 -5.0476 -1.5739 0.0181 30 1 -0.4850 0.8401 -0.0004 31 1 4.0314 -2.4463 -0.0025 32 1 5.3601 -4.5035 -0.1989 33 1 4.2479 -6.6834 -0.4434 34 1 1.7955 -6.8257 -0.4838 35 1 -0.4472 -5.7418 -0.3890 36 1 -2.5066 -4.6377 -0.2884 37 1 -4.3278 -4.8715 -0.3420 38 1 -6.7838 -4.9932 -0.3699 39 1 -8.1246 -2.9411 -0.1603 40 1 -4.5637 -0.6145 0.1272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033758003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = 115.421621 kcal Electronic energy + Delta-G solvation = -29736.578516 eV Core-core repulsion = 25297.467421 eV Total energy + Delta-G solvation = -4439.111095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.105 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -40.73736 -40.09095 -39.08436 -37.95544 -37.00246 -35.60917 -34.60670 -32.90612 -32.72557 -31.89740 -31.54203 -29.41176 -28.59569 -26.91510 -25.31132 -24.66124 -22.80874 -22.72829 -21.36233 -20.58166 -20.05505 -19.01112 -18.29377 -18.23453 -17.43580 -16.91388 -16.49725 -16.34972 -16.19488 -15.40010 -14.88396 -14.74559 -14.68879 -14.49310 -14.22312 -14.17749 -13.98383 -13.49137 -13.24324 -12.79331 -12.62928 -12.44577 -12.17262 -12.01998 -11.89768 -11.51841 -11.33071 -11.23583 -10.90051 -10.84638 -10.72568 -10.68272 -10.38028 -10.04254 -9.70889 -9.58931 -9.42814 -9.04635 -8.97308 -8.87617 -7.64296 -7.02711 -6.70819 -3.58670 -0.94786 0.26079 0.74130 0.86177 1.79351 2.52159 2.56264 2.86279 3.03020 3.06674 3.08627 3.23901 3.78093 3.80967 3.95718 4.05533 4.25669 4.32443 4.42711 4.58492 4.75657 5.09166 5.10219 5.24486 5.26758 5.35619 5.37050 5.48924 5.57468 5.61154 5.85060 5.93108 5.96676 6.22138 6.41350 6.53924 6.60540 6.85479 7.00825 7.08949 7.34257 7.44295 7.57044 7.60195 7.78944 8.04463 8.20950 8.56874 9.05952 9.94406 10.38895 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.002941 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.290694 B = 9519.418623 C =12116.259674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.042 3.958 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.395 4.395 8 H 0.089 0.911 9 O -0.040 6.040 10 C 0.090 3.910 11 C -0.239 4.239 12 C -0.056 4.056 13 C -0.261 4.261 14 C -0.027 4.027 15 C -0.170 4.170 16 C 0.111 3.889 17 N -0.211 5.211 18 N -0.586 5.586 19 C 0.543 3.457 20 O -0.424 6.424 21 C -0.109 4.109 22 C -0.039 4.039 23 C -0.121 4.121 24 C -0.039 4.039 25 C -0.010 4.010 26 N -0.020 5.020 27 O -0.157 6.157 28 O -0.173 6.173 29 C 0.004 3.996 30 H 0.286 0.714 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.361 0.639 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 -10.136 -1.057 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.106 0.894 9 O 0.073 5.927 10 C 0.028 3.972 11 C -0.258 4.258 12 C -0.076 4.076 13 C -0.281 4.281 14 C -0.048 4.048 15 C -0.176 4.176 16 C -0.094 4.094 17 N -0.020 5.020 18 N -0.328 5.328 19 C 0.326 3.674 20 O -0.291 6.291 21 C -0.115 4.115 22 C -0.058 4.058 23 C -0.140 4.140 24 C -0.059 4.059 25 C -0.096 4.096 26 N 0.462 4.538 27 O -0.353 6.353 28 O -0.366 6.366 29 C -0.016 4.016 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.199 0.801 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.029 -8.570 -0.878 13.220 hybrid contribution -0.157 -0.307 -0.113 0.363 sum -10.186 -8.877 -0.991 13.547 Atomic orbital electron populations 1.69148 1.06795 1.29631 1.29368 1.27052 0.95356 0.98642 0.96985 0.85805 0.79756 0.79440 0.79294 1.19403 1.19813 1.18523 1.21096 0.93022 0.83205 1.50085 0.89407 1.80445 1.36484 1.11450 1.64330 1.19143 0.89425 0.86438 1.02216 1.20710 0.93501 0.98420 1.13214 1.20645 0.97786 0.92464 0.96700 1.20159 0.93916 0.96648 1.17347 1.20511 0.93481 0.94998 0.95844 1.16904 0.88162 0.91524 1.21012 1.24267 0.94339 0.93038 0.97726 1.75982 0.85705 1.23797 1.16486 1.46886 1.04243 1.08066 1.73599 1.17521 0.84449 0.84935 0.80506 1.91178 1.70691 1.25772 1.41422 1.20209 0.94924 0.92674 1.03677 1.21925 0.95224 0.97571 0.91093 1.21170 0.93274 0.98416 1.01145 1.21295 1.02610 0.89504 0.92455 1.20224 0.90636 0.83461 1.15271 1.50440 1.03174 1.04017 0.96214 1.96338 1.73949 1.11107 1.53927 1.96258 0.89249 1.95275 1.55863 1.21231 0.89990 1.01650 0.88766 0.90143 0.86346 0.88268 0.88268 0.87653 0.88875 0.80124 0.83618 0.82733 0.82398 0.81065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.56 12.13 55.98 0.68 -18.88 16 2 C 0.04 1.07 5.69 -15.22 -0.09 0.98 16 3 Si 0.93 19.14 29.64 -169.99 -5.04 14.10 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.40 -10.50 9.47 34.09 0.32 -10.17 16 8 H 0.09 2.21 5.03 -52.48 -0.26 1.94 16 9 O -0.04 -1.08 7.16 21.47 0.15 -0.93 16 10 C 0.09 2.18 6.60 -38.58 -0.25 1.92 16 11 C -0.24 -5.28 9.12 -39.44 -0.36 -5.64 16 12 C -0.06 -1.08 10.03 -39.52 -0.40 -1.47 16 13 C -0.26 -4.65 10.03 -39.60 -0.40 -5.05 16 14 C -0.03 -0.49 9.79 -39.17 -0.38 -0.87 16 15 C -0.17 -3.58 5.88 -104.88 -0.62 -4.19 16 16 C 0.11 2.11 10.75 -14.71 -0.16 1.95 16 17 N -0.21 -4.56 8.90 32.13 0.29 -4.28 16 18 N -0.59 -9.82 6.21 30.52 0.19 -9.63 16 19 C 0.54 9.64 7.89 -12.36 -0.10 9.54 16 20 O -0.42 -9.86 15.16 5.28 0.08 -9.78 16 21 C -0.11 -1.37 5.87 -104.97 -0.62 -1.98 16 22 C -0.04 -0.31 9.54 -39.18 -0.37 -0.68 16 23 C -0.12 -0.74 10.03 -39.64 -0.40 -1.13 16 24 C -0.04 -0.32 9.57 -39.49 -0.38 -0.70 16 25 C -0.01 -0.12 6.88 -80.01 -0.55 -0.67 16 26 N -0.02 -0.28 4.98 33.93 0.17 -0.11 16 27 O -0.16 -2.56 19.14 -31.57 -0.60 -3.17 16 28 O -0.17 -2.47 19.14 -31.57 -0.60 -3.08 16 29 C 0.00 0.05 9.12 -39.18 -0.36 -0.31 16 30 H 0.29 7.15 8.26 -40.82 -0.34 6.81 16 31 H 0.12 2.59 5.69 -52.49 -0.30 2.29 16 32 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.09 1.32 8.03 -52.48 -0.42 0.90 16 36 H 0.36 4.18 6.69 -182.60 -1.22 2.96 16 37 H 0.15 0.74 6.41 -52.49 -0.34 0.41 16 38 H 0.16 0.38 8.06 -52.49 -0.42 -0.05 16 39 H 0.16 0.99 7.57 -52.48 -0.40 0.59 16 40 H 0.17 2.57 7.17 -52.48 -0.38 2.20 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -33.83 367.12 -8.40 -42.23 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.14 Total: 6.47 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -5.10 Total: -18.48 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 1.32 Total: -32.90 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.97 Total: -16.95 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.04 Total: 14.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.83 -8.40 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033758003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.647 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds