Wall clock time and date at job start Tue Mar 31 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46991 * 299.99927 * 3 2 1 6 6 H 1.48501 * 109.47116 * 59.99760 * 3 2 1 7 7 C 1.38748 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00063 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.76201 * 99.99991 * 179.97438 * 9 7 2 11 11 N 1.32121 * 120.14809 * 0.02562 * 10 9 7 12 12 C 1.32476 * 122.63202 * 180.02562 * 11 10 9 13 13 C 1.36291 * 121.97330 * 359.97438 * 12 11 10 14 14 C 1.40723 * 118.87562 * 0.02562 * 13 12 11 15 15 C 1.40666 * 122.15052 * 179.97438 * 14 13 12 16 16 O 1.35834 * 120.37293 * 0.02562 * 15 14 13 17 17 C 1.42901 * 117.00429 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47191 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.97433 * 89.99768 * 18 17 16 20 20 C 1.38205 * 120.02377 * 179.74187 * 19 18 17 21 21 C 1.38455 * 119.97496 * 0.26259 * 20 19 18 22 22 F 1.35097 * 120.02414 * 180.02562 * 21 20 19 23 23 C 1.38464 * 119.95049 * 359.97438 * 21 20 19 24 24 C 1.38201 * 119.97214 * 0.02562 * 23 21 20 25 25 C 1.37805 * 119.26113 * 180.29876 * 15 14 13 26 26 C 1.39157 * 120.75290 * 359.44743 * 25 15 14 27 27 C 1.36363 * 121.11139 * 0.55755 * 26 25 15 28 28 C 1.40024 * 119.80464 * 359.72693 * 27 26 25 29 29 H 0.96997 * 120.00534 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.01337 * 180.02562 * 12 11 10 31 31 H 1.08001 * 120.56487 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.46929 * 60.00069 * 17 16 15 33 33 H 1.08994 * 109.46774 * 300.00412 * 17 16 15 34 34 H 1.08002 * 119.99029 * 0.02809 * 19 18 17 35 35 H 1.08004 * 120.00758 * 180.27782 * 20 19 18 36 36 H 1.07993 * 120.01407 * 180.02562 * 23 21 20 37 37 H 1.07996 * 119.98812 * 180.02562 * 24 23 21 38 38 H 1.07998 * 119.62171 * 179.71884 * 25 15 14 39 39 H 1.08000 * 119.44684 * 180.26297 * 26 25 15 40 40 H 1.08007 * 120.09612 * 179.74768 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3466 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0096 -1.2015 0.0005 8 1 3.0897 -1.2015 0.0001 9 16 1.1287 -2.7275 0.0005 10 6 2.4785 -3.8600 0.0005 11 7 3.7212 -3.4113 0.0010 12 6 4.7720 -4.2180 0.0006 13 6 4.6405 -5.5745 0.0000 14 6 3.3484 -6.1320 -0.0006 15 6 3.1328 -7.5220 -0.0017 16 8 4.1857 -8.3803 -0.0017 17 6 3.8841 -9.7771 -0.0034 18 6 5.1669 -10.5680 -0.0025 19 6 5.7533 -10.9315 1.1954 20 6 6.9269 -11.6614 1.1974 21 6 7.5182 -12.0238 -0.0009 22 9 8.6651 -12.7377 -0.0001 23 6 6.9325 -11.6549 -1.2001 24 6 5.7590 -10.9250 -1.1997 25 6 1.8416 -8.0034 -0.0085 26 6 0.7571 -7.1315 -0.0027 27 6 0.9395 -5.7801 -0.0015 28 6 2.2367 -5.2529 -0.0004 29 1 -0.4851 0.8400 -0.0004 30 1 5.7627 -3.7878 0.0015 31 1 5.5131 -6.2109 0.0001 32 1 3.3059 -10.0229 -0.8942 33 1 3.3044 -10.0247 0.8858 34 1 5.2917 -10.6491 2.1301 35 1 7.3824 -11.9492 2.1335 36 1 7.3926 -11.9373 -2.1354 37 1 5.3018 -10.6375 -2.1349 38 1 1.6694 -9.0696 -0.0140 39 1 -0.2460 -7.5318 -0.0039 40 1 0.0858 -5.1184 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036708207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:04 Heat of formation + Delta-G solvation = -10.158419 kcal Electronic energy + Delta-G solvation = -26416.638960 eV Core-core repulsion = 22394.915215 eV Total energy + Delta-G solvation = -4021.723745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.28204 -40.58015 -39.61157 -38.35024 -36.14408 -32.75648 -32.60263 -31.58273 -31.41116 -30.59526 -28.60601 -26.59707 -25.74534 -23.70269 -23.50417 -23.16089 -22.02253 -21.41923 -18.51343 -18.17006 -17.90936 -17.25156 -16.95725 -16.52767 -16.13695 -15.96134 -15.64292 -15.51909 -14.99390 -14.66420 -14.37799 -14.24661 -13.99755 -13.78793 -13.76866 -13.40699 -13.07983 -12.95947 -12.66513 -12.35012 -11.97495 -11.96789 -11.50643 -11.43875 -11.34171 -11.20137 -11.02200 -10.91298 -10.70653 -10.12604 -9.79629 -9.53689 -9.16214 -9.10203 -8.87744 -8.70804 -8.53853 -7.71836 -6.61572 -6.53371 -4.20436 0.59242 0.80883 0.89386 1.38439 2.37934 2.81100 2.99974 3.13793 3.20562 3.31171 3.50825 3.52319 3.83470 3.96610 4.24565 4.31659 4.48142 4.59013 4.69210 4.78057 4.90306 4.93440 4.94035 4.98779 5.10271 5.11350 5.34272 5.47122 5.47478 5.50826 5.52969 5.67677 5.68325 5.77762 5.87145 5.98556 6.04898 6.18413 6.34005 6.42916 6.49405 6.70163 6.79938 6.94246 7.24869 7.50325 7.53841 8.39157 8.77761 8.99921 10.53986 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.001992 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.634217 B =14052.631285 C =15030.327441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.072 3.928 3 Si 0.930 3.070 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.112 0.888 9 S 0.134 5.866 10 C 0.128 3.872 11 N -0.500 5.500 12 C 0.111 3.889 13 C -0.212 4.212 14 C -0.011 4.011 15 C 0.118 3.882 16 O -0.303 6.303 17 C 0.102 3.898 18 C -0.102 4.102 19 C -0.065 4.065 20 C -0.157 4.157 21 C 0.105 3.895 22 F -0.139 7.139 23 C -0.157 4.157 24 C -0.065 4.065 25 C -0.201 4.201 26 C -0.109 4.109 27 C -0.103 4.103 28 C -0.077 4.077 29 H 0.274 0.726 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -23.224 -0.013 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.755 3.245 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.681 4.681 8 H 0.129 0.871 9 S 0.388 5.612 10 C -0.130 4.130 11 N -0.216 5.216 12 C -0.041 4.041 13 C -0.241 4.241 14 C -0.018 4.018 15 C 0.072 3.928 16 O -0.217 6.217 17 C 0.027 3.973 18 C -0.103 4.103 19 C -0.083 4.083 20 C -0.176 4.176 21 C 0.086 3.914 22 F -0.118 7.118 23 C -0.176 4.176 24 C -0.083 4.083 25 C -0.221 4.221 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.085 4.085 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.355 -22.125 -0.011 23.020 hybrid contribution 1.839 -0.078 -0.001 1.841 sum 8.193 -22.203 -0.013 23.667 Atomic orbital electron populations 1.69955 1.06209 1.28478 1.45829 1.25194 0.95157 0.99984 0.93378 0.85906 0.80175 0.80424 0.77950 1.18861 1.20358 1.20361 1.23597 0.97884 0.89833 1.56800 0.87051 1.83335 1.02302 0.97122 1.78486 1.24644 0.98323 0.94110 0.95918 1.67984 0.97814 1.38378 1.17450 1.22107 0.97393 0.90150 0.94418 1.21302 0.95946 0.96291 1.10563 1.17295 0.94129 0.89413 1.00915 1.18661 0.86202 0.88683 0.99283 1.86081 1.31442 1.15307 1.88846 1.21512 0.94070 0.79241 1.02521 1.19592 0.97304 0.99846 0.93534 1.20984 0.93932 0.95151 0.98212 1.21161 0.97438 1.01671 0.97335 1.17799 0.83794 0.95009 0.94782 1.91511 1.47160 1.75674 1.97447 1.21161 0.97478 1.01641 0.97322 1.20985 0.93897 0.95162 0.98233 1.21022 0.91704 0.99885 1.09483 1.20425 0.98086 0.92886 1.01456 1.20891 0.96019 0.95443 1.00017 1.18381 0.93267 0.92899 1.03905 0.91596 0.84245 0.85614 0.90911 0.90918 0.84581 0.84412 0.84413 0.84581 0.85963 0.85968 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 13.22 55.49 0.73 -23.28 16 2 C 0.07 1.94 5.49 -17.47 -0.10 1.85 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.66 9.26 30.92 0.29 -14.38 16 8 H 0.11 3.12 6.56 -52.48 -0.34 2.78 16 9 S 0.13 3.31 20.15 -107.50 -2.17 1.14 16 10 C 0.13 2.94 7.04 -16.24 -0.11 2.82 16 11 N -0.50 -11.55 8.44 -11.93 -0.10 -11.66 16 12 C 0.11 2.14 11.06 -17.97 -0.20 1.94 16 13 C -0.21 -3.78 9.65 -39.34 -0.38 -4.16 16 14 C -0.01 -0.20 5.76 -106.71 -0.61 -0.81 16 15 C 0.12 1.78 6.70 -38.82 -0.26 1.52 16 16 O -0.30 -3.98 9.46 -19.22 -0.18 -4.17 16 17 C 0.10 0.92 4.87 36.00 0.18 1.09 16 18 C -0.10 -0.88 5.51 -104.62 -0.58 -1.45 16 19 C -0.06 -0.51 9.70 -39.59 -0.38 -0.90 16 20 C -0.16 -1.23 10.03 -39.51 -0.40 -1.63 16 21 C 0.11 0.92 7.30 -39.42 -0.29 0.63 16 22 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 23 C -0.16 -1.23 10.03 -39.51 -0.40 -1.63 16 24 C -0.06 -0.51 9.70 -39.59 -0.38 -0.90 16 25 C -0.20 -2.63 9.04 -39.40 -0.36 -2.99 16 26 C -0.11 -1.52 9.94 -39.92 -0.40 -1.92 16 27 C -0.10 -1.77 9.41 -39.59 -0.37 -2.15 16 28 C -0.08 -1.52 5.75 -106.70 -0.61 -2.14 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.13 1.96 7.72 -52.49 -0.41 1.56 16 32 H 0.07 0.55 7.60 -51.93 -0.39 0.16 16 33 H 0.07 0.55 7.62 -51.93 -0.40 0.16 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 1.19 6.27 -52.49 -0.33 0.86 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.13 2.27 6.93 -52.48 -0.36 1.91 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -30.97 364.99 -10.47 -41.44 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.90 Total: 1.64 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -5.37 Total: -25.19 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.63 Total: -34.93 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.18 Total: -4.17 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.17 Total: 1.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.97 -10.47 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036708207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.282 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds