Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99866 * 2 1 4 4 H 1.48496 * 109.47077 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.46947 * 30.00355 * 3 2 1 6 6 H 1.48504 * 109.46461 * 150.00274 * 3 2 1 7 7 C 1.37876 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00058 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00069 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00209 * 270.00186 * 10 9 7 12 12 C 1.50696 * 109.47088 * 269.99968 * 11 10 9 13 13 C 1.34510 * 125.79168 * 89.71576 * 12 11 10 14 14 C 1.41386 * 106.84229 * 179.89060 * 13 12 11 15 15 C 1.34506 * 106.83912 * 0.36759 * 14 13 12 16 16 O 1.34301 * 125.78898 * 270.02268 * 12 11 10 17 17 C 1.34782 * 120.00021 * 89.99754 * 10 9 7 18 18 O 1.21274 * 119.99782 * 180.02562 * 17 10 9 19 19 C 1.50701 * 119.99923 * 0.02562 * 17 10 9 20 20 N 1.46893 * 109.47145 * 173.98303 * 19 17 10 21 21 C 1.46422 * 111.00018 * 296.86333 * 20 19 17 22 22 C 1.53384 * 108.66938 * 178.91941 * 21 20 19 23 23 C 1.53043 * 107.92973 * 291.79542 * 22 21 20 24 24 C 1.50806 * 109.65851 * 47.34849 * 23 22 21 25 25 C 1.38614 * 118.12498 * 164.55329 * 24 23 22 26 26 C 1.38051 * 120.48366 * 179.43054 * 25 24 23 27 27 C 1.38311 * 119.88859 * 0.22023 * 26 25 24 28 28 C 1.37804 * 119.95522 * 359.61941 * 27 26 25 29 29 C 1.38372 * 122.00804 * 344.19279 * 24 23 22 30 30 H 0.97001 * 119.99930 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47072 * 59.99913 * 9 7 2 32 32 H 1.08996 * 109.47182 * 299.99795 * 9 7 2 33 33 H 1.09004 * 109.46924 * 29.99943 * 11 10 9 34 34 H 1.08995 * 109.47208 * 149.99509 * 11 10 9 35 35 H 1.08001 * 126.58046 * 0.02562 * 13 12 11 36 36 H 1.08001 * 126.57547 * 180.16480 * 14 13 12 37 37 H 1.08006 * 125.79162 * 179.75135 * 15 14 13 38 38 H 1.09000 * 109.47108 * 53.98341 * 19 17 10 39 39 H 1.08995 * 109.47157 * 293.98761 * 19 17 10 40 40 H 1.08999 * 109.60404 * 298.67229 * 21 20 19 41 41 H 1.09004 * 109.60441 * 59.00540 * 21 20 19 42 42 H 1.08997 * 109.77015 * 51.40518 * 22 21 20 43 43 H 1.08995 * 109.76640 * 172.13846 * 22 21 20 44 44 H 1.08996 * 109.44299 * 287.28862 * 23 22 21 45 45 H 1.09004 * 109.43533 * 167.40220 * 23 22 21 46 46 H 1.08001 * 119.75989 * 359.41170 * 25 24 23 47 47 H 1.07998 * 120.05859 * 179.97438 * 26 25 24 48 48 H 1.08006 * 120.02606 * 179.87440 * 27 26 25 49 49 H 1.08001 * 119.79512 * 180.26017 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2446 -3.2656 1.2678 12 6 5.6680 -3.0287 1.7022 13 6 6.0971 -2.0111 2.4701 14 6 7.4919 -2.1784 2.6300 15 6 7.8329 -3.2837 1.9436 16 8 6.7242 -3.7946 1.3836 17 6 4.2241 -3.2109 -1.1682 18 8 4.6279 -4.3544 -1.1680 19 6 3.9729 -2.5006 -2.4733 20 7 4.4252 -3.3463 -3.5860 21 6 5.8699 -3.5746 -3.5179 22 6 6.2790 -4.4825 -4.6845 23 6 5.6817 -5.8692 -4.4343 24 6 4.2296 -5.7344 -4.0501 25 6 3.4326 -6.8673 -4.1000 26 6 2.0995 -6.8019 -3.7475 27 6 1.5513 -5.5973 -3.3455 28 6 2.3382 -4.4675 -3.2902 29 6 3.6863 -4.5268 -3.6486 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6804 0.8888 32 1 3.8746 -0.6801 -0.8911 33 1 3.5640 -2.8813 2.0276 34 1 4.0775 -4.3348 1.1377 35 1 5.4919 -1.2194 2.8865 36 1 8.1564 -1.5394 3.1925 37 1 8.8294 -3.6912 1.8570 38 1 4.5219 -1.5590 -2.4861 39 1 2.9066 -2.3008 -2.5789 40 1 6.3947 -2.6224 -3.5942 41 1 6.1200 -4.0554 -2.5721 42 1 5.8923 -4.0778 -5.6198 43 1 7.3656 -4.5518 -4.7342 44 1 6.2266 -6.3587 -3.6271 45 1 5.7629 -6.4682 -5.3414 46 1 3.8576 -7.8082 -4.4173 47 1 1.4847 -7.6888 -3.7893 48 1 0.5080 -5.5431 -3.0711 49 1 1.9085 -3.5292 -2.9719 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037117535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = 27.774058 kcal Electronic energy + Delta-G solvation = -32821.930777 eV Core-core repulsion = 28716.111098 eV Total energy + Delta-G solvation = -4105.819679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.31958 -40.75183 -38.79993 -36.41952 -35.29183 -34.09178 -32.87291 -32.59723 -30.83104 -30.01266 -29.49886 -28.01224 -27.63051 -25.31964 -23.98010 -22.94131 -22.67260 -21.57925 -21.46125 -20.36816 -19.30348 -18.60454 -17.40148 -16.97724 -16.81508 -16.68914 -16.04172 -15.83429 -15.42469 -14.99657 -14.88050 -14.33838 -14.25681 -14.13060 -13.75733 -13.33053 -13.26890 -13.08706 -12.79814 -12.74650 -12.62821 -12.56553 -12.42347 -12.21683 -12.09388 -11.79024 -11.55523 -11.29725 -11.24115 -11.01347 -10.91217 -10.79418 -10.60473 -10.41353 -10.19421 -9.99793 -9.74914 -9.70243 -9.17453 -8.80935 -8.34306 -8.33091 -7.99186 -7.25752 -6.29962 -4.33373 1.79309 1.80341 1.90587 2.76118 3.04017 3.11916 3.19671 3.22243 3.33801 3.75977 3.91013 4.19099 4.33284 4.84194 4.91765 4.97236 4.99999 5.05482 5.14841 5.21130 5.23400 5.29920 5.38156 5.50427 5.57653 5.63089 5.65012 5.76098 5.82858 5.88675 5.94596 5.97176 5.98097 6.00596 6.04352 6.12770 6.17011 6.27605 6.30585 6.33810 6.42984 6.52697 6.58734 6.68926 6.79527 6.96297 7.08294 7.11999 7.32299 7.32750 7.38089 7.66400 7.93745 8.27641 8.67707 8.77379 9.28511 10.82094 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.004859 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.175757 B = 5761.641026 C = 7944.577468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.207 3.793 10 N -0.584 5.584 11 C 0.195 3.805 12 C -0.014 4.014 13 C -0.206 4.206 14 C -0.216 4.216 15 C -0.051 4.051 16 O -0.166 6.166 17 C 0.493 3.507 18 O -0.545 6.545 19 C 0.034 3.966 20 N -0.475 5.475 21 C 0.043 3.957 22 C -0.117 4.117 23 C -0.072 4.072 24 C -0.117 4.117 25 C -0.099 4.099 26 C -0.157 4.157 27 C -0.095 4.095 28 C -0.156 4.156 29 C 0.156 3.844 30 H 0.268 0.732 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.196 0.804 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 -6.959 -3.552 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.315 5.315 11 C 0.072 3.928 12 C -0.066 4.066 13 C -0.226 4.226 14 C -0.235 4.235 15 C -0.120 4.120 16 O -0.061 6.061 17 C 0.280 3.720 18 O -0.424 6.424 19 C -0.095 4.095 20 N -0.187 5.187 21 C -0.084 4.084 22 C -0.155 4.155 23 C -0.110 4.110 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.176 4.176 27 C -0.113 4.113 28 C -0.176 4.176 29 C 0.057 3.943 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.213 0.787 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.245 -7.350 -4.162 14.876 hybrid contribution 0.486 1.078 0.985 1.539 sum 12.731 -6.272 -3.177 14.544 Atomic orbital electron populations 1.69881 1.06203 1.27347 1.48830 1.24847 0.94689 0.98809 0.94039 0.86984 0.80493 0.84075 0.79089 1.19687 1.20790 1.18853 1.21331 0.88728 0.95148 1.53248 0.90125 1.19887 0.96045 0.77568 0.97859 1.48023 1.63545 1.16054 1.03857 1.19711 0.85847 0.99780 0.87499 1.23245 0.90146 0.92851 1.00322 1.21667 0.95231 1.01029 1.04635 1.21785 0.96044 1.00109 1.05610 1.23971 0.90635 0.97289 1.00076 1.84115 1.15338 1.47536 1.59126 1.21414 0.77189 0.86872 0.86528 1.90651 1.46869 1.17705 1.87188 1.22510 1.05436 0.96262 0.85246 1.58577 1.05263 1.15393 1.39504 1.22342 0.86038 1.00055 0.99917 1.21649 1.00154 0.95035 0.98658 1.20438 0.92301 0.97329 1.00888 1.19310 0.95527 0.91950 1.05204 1.20794 0.93873 0.96996 1.00112 1.20844 0.95390 0.97646 1.03712 1.20868 0.99425 0.92571 0.98458 1.21243 0.92982 0.99679 1.03709 1.18364 0.92364 0.88103 0.95436 0.92220 0.94599 0.95202 0.86822 0.89001 0.83460 0.83851 0.78688 0.87658 0.85332 0.90724 0.90963 0.91008 0.91044 0.91063 0.91273 0.86876 0.86855 0.86364 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 13.96 55.43 0.77 -23.85 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 7 C -0.55 -13.44 9.94 -34.44 -0.34 -13.79 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C 0.21 4.29 4.06 -5.20 -0.02 4.27 16 10 N -0.58 -11.33 2.44 -176.44 -0.43 -11.76 16 11 C 0.20 3.47 5.94 -5.20 -0.03 3.44 16 12 C -0.01 -0.23 6.90 -35.63 -0.25 -0.48 16 13 C -0.21 -3.19 10.81 -39.70 -0.43 -3.62 16 14 C -0.22 -2.91 10.91 -39.70 -0.43 -3.34 16 15 C -0.05 -0.69 12.09 29.41 0.36 -0.33 16 16 O -0.17 -2.82 10.65 5.71 0.06 -2.76 16 17 C 0.49 9.57 6.66 -10.98 -0.07 9.50 16 18 O -0.55 -11.44 12.55 5.56 0.07 -11.37 16 19 C 0.03 0.60 4.12 -4.98 -0.02 0.58 16 20 N -0.47 -7.95 4.72 -172.66 -0.82 -8.77 16 21 C 0.04 0.64 5.17 -3.89 -0.02 0.62 16 22 C -0.12 -1.47 6.19 -26.51 -0.16 -1.63 16 23 C -0.07 -0.96 5.81 -27.81 -0.16 -1.12 16 24 C -0.12 -1.88 5.74 -104.38 -0.60 -2.48 16 25 C -0.10 -1.47 9.63 -39.51 -0.38 -1.85 16 26 C -0.16 -2.34 10.05 -39.62 -0.40 -2.74 16 27 C -0.09 -1.55 10.03 -39.71 -0.40 -1.95 16 28 C -0.16 -2.81 8.64 -39.23 -0.34 -3.15 16 29 C 0.16 2.73 4.04 -83.85 -0.34 2.39 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.03 0.60 5.71 -51.93 -0.30 0.30 16 33 H 0.11 1.91 8.07 -51.93 -0.42 1.49 16 34 H 0.09 1.68 7.42 -51.93 -0.39 1.30 16 35 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.20 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.11 1.71 7.07 -51.93 -0.37 1.35 16 39 H 0.13 2.42 5.87 -51.93 -0.30 2.11 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.26 5.79 -51.93 -0.30 0.96 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 48 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 49 H 0.13 2.40 5.81 -52.49 -0.31 2.10 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -30.04 393.04 -10.22 -40.26 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.99 Total: 11.76 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -4.14 Total: -13.70 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.47 Total: -44.38 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.13 Total: -14.13 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.04 -10.22 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037117535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.032 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds