Wall clock time and date at job start Tue Mar 31 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36491 * 126.89775 * 2 1 4 4 C 1.46761 * 125.55434 * 0.02562 * 3 2 1 5 5 O 1.21700 * 120.00274 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00249 * 179.97438 * 4 3 2 7 7 C 1.39887 * 120.00205 * 174.78948 * 6 4 3 8 8 C 1.38950 * 120.00706 * 326.11028 * 7 6 4 9 9 C 1.37995 * 119.99756 * 179.79020 * 8 7 6 10 10 C 1.38912 * 120.00341 * 0.49191 * 9 8 7 11 11 O 1.35780 * 119.99590 * 179.71779 * 10 9 8 12 12 C 1.34814 * 116.99803 * 185.93021 * 11 10 9 13 13 H 1.08002 * 120.00181 * 5.41276 * 12 11 10 14 14 C 1.38630 * 119.99561 * 185.40781 * 12 11 10 15 15 N 1.31576 * 120.00495 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99691 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47097 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46874 * 120.00123 * 16 14 12 19 19 H 1.48498 * 109.47233 * 239.99958 * 16 14 12 20 20 C 1.38912 * 120.00883 * 359.74547 * 10 9 8 21 21 C 1.38001 * 120.00277 * 0.02562 * 20 10 9 22 22 O 1.35279 * 108.88493 * 179.97438 * 3 2 1 23 23 C 1.32627 * 109.96676 * 359.92082 * 22 3 2 24 24 C 1.39051 * 107.79339 * 0.14023 * 23 22 3 25 25 C 1.47178 * 121.80060 * 179.71862 * 24 23 22 26 26 O 1.21314 * 122.49872 * 168.68963 * 25 24 23 27 27 C 1.52172 * 115.05608 * 348.71601 * 25 24 23 28 28 C 1.53198 * 108.40629 * 42.53095 * 27 25 24 29 29 C 1.50739 * 129.37681 * 180.17835 * 23 22 3 30 30 H 1.09002 * 109.47262 * 90.02728 * 1 2 3 31 31 H 1.09007 * 109.46979 * 210.02098 * 1 2 3 32 32 H 1.09000 * 109.47451 * 330.02587 * 1 2 3 33 33 H 0.97007 * 119.99210 * 354.78703 * 6 4 3 34 34 H 1.08004 * 119.99702 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.99882 * 180.23063 * 9 8 7 36 36 H 0.96994 * 120.00151 * 180.02562 * 15 14 12 37 37 H 1.08005 * 120.00017 * 179.97438 * 20 10 9 38 38 H 1.08002 * 119.99843 * 179.97438 * 21 20 10 39 39 H 1.09001 * 109.68088 * 282.79629 * 27 25 24 40 40 H 1.08998 * 109.68618 * 162.27851 * 27 25 24 41 41 H 1.08996 * 109.22783 * 55.48717 * 28 27 25 42 42 H 1.09005 * 109.22652 * 174.88931 * 28 27 25 43 43 H 1.09008 * 109.50388 * 39.52853 * 29 23 22 44 44 H 1.09002 * 109.53967 * 279.42979 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3264 1.0915 0.0000 4 6 1.8839 2.4908 0.0005 5 8 0.6956 2.7533 0.0006 6 7 2.7936 3.4853 0.0010 7 6 2.3755 4.8158 -0.1085 8 6 1.2620 5.1333 -0.8766 9 6 0.8472 6.4453 -0.9810 10 6 1.5488 7.4498 -0.3265 11 8 1.1439 8.7413 -0.4340 12 6 1.9363 9.6795 0.1224 13 1 2.8885 9.3989 0.5479 14 6 1.5288 11.0043 0.1483 15 7 0.3686 11.3460 -0.3697 16 14 2.6270 12.3043 0.9186 17 1 3.8686 11.6664 1.4252 18 1 2.9763 13.3250 -0.1019 19 1 1.9094 12.9549 2.0441 20 6 2.6650 7.1332 0.4374 21 6 3.0773 5.8207 0.5459 22 8 3.6129 0.6732 0.0006 23 6 3.6581 -0.6523 0.0027 24 6 2.3494 -1.1221 0.0003 25 6 2.0421 -2.5614 -0.0045 26 8 0.9246 -2.9900 0.1941 27 6 3.2297 -3.4731 -0.2762 28 6 4.4324 -2.9497 0.5154 29 6 4.8552 -1.5683 0.0077 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 3.7383 3.2784 0.0773 34 1 0.7190 4.3528 -1.3888 35 1 -0.0205 6.6916 -1.5750 36 1 0.0837 12.2730 -0.3519 37 1 3.2106 7.9144 0.9459 38 1 3.9453 5.5747 1.1395 39 1 3.4608 -3.4674 -1.3414 40 1 2.9938 -4.4884 0.0427 41 1 4.1647 -2.8784 1.5696 42 1 5.2656 -3.6435 0.4029 43 1 5.6239 -1.1591 0.6634 44 1 5.2501 -1.6577 -1.0044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040544279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:34 Heat of formation + Delta-G solvation = -61.231166 kcal Electronic energy + Delta-G solvation = -29800.002949 eV Core-core repulsion = 25456.771957 eV Total energy + Delta-G solvation = -4343.230992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.34929 -40.11937 -39.52582 -38.67068 -36.63473 -36.37710 -34.55635 -33.89466 -32.23170 -30.53872 -30.27329 -29.36382 -28.54444 -27.20804 -25.41427 -24.08847 -23.33854 -22.41163 -21.91367 -20.73158 -20.25674 -19.32186 -18.21643 -17.89017 -17.33840 -17.12321 -16.57429 -16.24644 -15.63679 -15.46896 -15.05456 -14.89674 -14.65725 -14.61169 -14.50083 -14.17896 -13.75732 -13.61397 -13.45704 -13.38953 -13.18155 -12.96888 -12.85259 -12.58393 -12.47389 -12.10766 -11.89150 -11.79301 -11.64963 -11.64178 -11.58137 -11.10672 -10.72149 -10.46699 -10.22987 -10.02557 -9.96438 -9.73577 -9.30867 -8.85655 -8.72501 -8.25961 -6.98117 -6.47651 -4.05500 0.49146 0.99268 1.97774 2.11803 2.18375 2.49100 3.06455 3.07357 3.11969 3.16705 3.17706 3.61995 3.86982 3.94288 4.10481 4.18337 4.19819 4.51533 4.57580 4.68460 4.69305 4.88614 4.98920 5.06897 5.07814 5.12966 5.26839 5.28445 5.42100 5.46518 5.51929 5.61417 5.67886 5.72123 5.86396 6.04220 6.14130 6.15291 6.24173 6.40084 6.74027 6.78798 6.92425 7.08143 7.14066 7.17889 7.36020 7.58305 7.70413 7.96555 8.15109 8.97582 9.67390 10.70188 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.001789 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.490717 B =15647.926879 C =16415.456460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.026 4.026 3 C -0.093 4.093 4 C 0.596 3.404 5 O -0.500 6.500 6 N -0.647 5.647 7 C 0.032 3.968 8 C -0.065 4.065 9 C -0.177 4.177 10 C 0.149 3.851 11 O -0.174 6.174 12 C -0.391 4.391 13 H 0.093 0.907 14 C 0.039 3.961 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.219 4.219 21 C -0.086 4.086 22 O -0.141 6.141 23 C 0.080 3.920 24 C -0.284 4.284 25 C 0.427 3.573 26 O -0.447 6.447 27 C -0.165 4.165 28 C -0.111 4.111 29 C -0.048 4.048 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.405 0.595 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.270 0.730 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -28.033 0.611 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.028 4.028 3 C -0.144 4.144 4 C 0.382 3.618 5 O -0.376 6.376 6 N -0.291 5.291 7 C -0.060 4.060 8 C -0.085 4.085 9 C -0.196 4.196 10 C 0.094 3.906 11 O -0.077 6.077 12 C -0.467 4.467 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.239 4.239 21 C -0.106 4.106 22 O -0.035 6.035 23 C 0.023 3.977 24 C -0.286 4.286 25 C 0.304 3.696 26 O -0.321 6.321 27 C -0.202 4.202 28 C -0.149 4.149 29 C -0.084 4.084 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.240 0.760 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.777 -27.523 0.567 29.563 hybrid contribution 1.170 0.596 0.478 1.397 sum 11.947 -26.927 1.045 29.477 Atomic orbital electron populations 1.20550 0.87243 1.04450 1.03471 1.20225 0.97754 0.89465 0.95399 1.22037 0.79832 0.95006 1.17505 1.16480 0.85994 0.81351 0.77927 1.90890 1.15356 1.81580 1.49808 1.43062 1.09669 1.04743 1.71589 1.17188 1.01377 0.81658 1.05816 1.20597 0.95610 0.95567 0.96739 1.20116 1.03048 0.90740 1.05739 1.19434 0.92239 0.86094 0.92805 1.84007 1.46290 1.10337 1.67113 1.21368 1.00393 0.86157 1.38831 0.88985 1.25309 0.96897 0.97319 0.97068 1.70054 1.19232 1.18636 1.41522 0.85638 0.79155 0.79875 0.78694 1.19097 1.20132 1.20130 1.20984 1.00927 0.96042 1.05903 1.20472 0.99642 0.92147 0.98316 1.83658 1.29266 1.21644 1.68897 1.23833 0.96891 0.81083 0.95894 1.21047 0.92874 0.96627 1.18089 1.21964 0.89154 0.87105 0.71352 1.90562 1.25175 1.79603 1.36800 1.22396 0.94370 1.00339 1.03114 1.21546 0.98066 0.94610 1.00652 1.20447 0.92004 0.91320 1.04645 0.90318 0.90403 0.88897 0.75970 0.85730 0.85957 0.91998 0.84978 0.87052 0.87734 0.88257 0.90503 0.88653 0.88064 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.64 36.00 0.35 -0.93 16 2 C -0.03 -0.33 6.21 -104.47 -0.65 -0.98 16 3 C -0.09 -1.19 7.10 -36.77 -0.26 -1.46 16 4 C 0.60 9.06 7.52 -12.82 -0.10 8.96 16 5 O -0.50 -9.02 12.41 5.19 0.06 -8.95 16 6 N -0.65 -9.31 5.33 -10.98 -0.06 -9.37 16 7 C 0.03 0.56 6.27 -83.66 -0.52 0.04 16 8 C -0.07 -1.27 8.64 -39.41 -0.34 -1.61 16 9 C -0.18 -3.84 9.98 -39.42 -0.39 -4.23 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 O -0.17 -4.94 9.76 0.00 0.00 -4.94 16 12 C -0.39 -10.78 9.44 30.88 0.29 -10.49 16 13 H 0.09 2.33 5.29 -52.49 -0.28 2.05 16 14 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 15 N -0.86 -25.08 13.67 55.48 0.76 -24.32 16 16 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 C -0.22 -4.64 9.12 -39.42 -0.36 -5.00 16 21 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 22 O -0.14 -1.44 10.30 7.12 0.07 -1.37 16 23 C 0.08 0.65 7.41 -33.99 -0.25 0.39 16 24 C -0.28 -2.94 6.10 -105.18 -0.64 -3.58 16 25 C 0.43 4.00 7.10 -29.95 -0.21 3.79 16 26 O -0.45 -5.69 16.88 5.53 0.09 -5.59 16 27 C -0.16 -0.73 6.16 -27.05 -0.17 -0.89 16 28 C -0.11 -0.28 5.80 -26.56 -0.15 -0.43 16 29 C -0.05 -0.15 6.24 -27.80 -0.17 -0.33 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.95 7.20 -51.93 -0.37 0.58 16 32 H 0.09 1.29 6.42 -51.93 -0.33 0.95 16 33 H 0.41 4.53 8.56 -40.82 -0.35 4.19 16 34 H 0.12 2.34 6.45 -52.48 -0.34 2.00 16 35 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.13 2.77 5.71 -52.48 -0.30 2.47 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 43 H 0.10 0.18 8.14 -51.92 -0.42 -0.24 16 44 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -34.60 375.13 -7.69 -42.29 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.91 Total: 5.77 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -4.34 Total: -14.39 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.70 Total: -33.69 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.23 Total: -20.86 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.60 -7.69 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040544279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.942 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds