Wall clock time and date at job start Tue Mar 31 2020 05:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35965 * 117.00412 * 2 1 4 4 C 1.37841 * 120.01244 * 359.97438 * 3 2 1 5 5 C 1.40792 * 119.66226 * 179.97438 * 4 3 2 6 6 C 1.41196 * 120.15823 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99743 * 334.51784 * 6 5 4 8 8 C 1.39873 * 120.00073 * 154.51175 * 6 5 4 9 9 N 1.30885 * 119.99988 * 343.08987 * 8 6 5 10 10 Si 1.86805 * 119.99927 * 163.08928 * 8 6 5 11 11 H 1.48494 * 109.46978 * 90.00060 * 10 8 6 12 12 H 1.48499 * 109.46851 * 210.00476 * 10 8 6 13 13 H 1.48507 * 109.46908 * 330.00148 * 10 8 6 14 14 C 1.40844 * 119.69231 * 0.02562 * 5 4 3 15 15 C 1.36526 * 120.02198 * 359.97438 * 14 5 4 16 16 Br 1.89100 * 119.82998 * 179.97438 * 15 14 5 17 17 C 1.39252 * 120.34272 * 359.73902 * 15 14 5 18 18 O 1.35754 * 119.84431 * 180.25562 * 17 15 14 19 19 C 1.42901 * 117.00126 * 270.25983 * 18 17 15 20 20 C 1.53002 * 109.46996 * 180.02562 * 19 18 17 21 21 F 1.39893 * 109.47023 * 59.99945 * 20 19 18 22 22 F 1.39897 * 109.47155 * 180.02562 * 20 19 18 23 23 F 1.39906 * 109.47005 * 300.00055 * 20 19 18 24 24 H 1.09000 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46942 * 60.00565 * 1 2 3 26 26 H 1.08995 * 109.47313 * 300.00465 * 1 2 3 27 27 H 1.08003 * 120.16638 * 359.95352 * 4 3 2 28 28 H 0.96999 * 120.00213 * 180.02562 * 9 8 6 29 29 H 1.07999 * 119.99212 * 179.97438 * 14 5 4 30 30 H 1.08998 * 109.47110 * 300.00651 * 19 18 17 31 31 H 1.09005 * 109.46552 * 60.00028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2959 2.3677 -0.0005 5 6 1.9428 3.6181 0.0000 6 6 1.1844 4.8091 -0.0011 7 1 0.1827 4.8110 -0.4046 8 6 1.7305 5.9865 0.5206 9 7 2.7830 5.9319 1.2967 10 14 0.9576 7.6367 0.1097 11 1 -0.0792 7.9633 1.1214 12 1 2.0051 8.6893 0.1166 13 1 0.3325 7.5692 -1.2357 14 6 3.3501 3.6756 0.0006 15 6 4.0808 2.5224 0.0011 16 35 5.9700 2.6058 0.0011 17 6 3.4422 1.2849 0.0066 18 8 4.1788 0.1446 0.0123 19 6 4.5363 -0.4032 -1.2582 20 6 5.3579 -1.6772 -1.0513 21 9 4.5987 -2.6109 -0.3378 22 9 5.7084 -2.2132 -2.2951 23 9 6.5183 -1.3721 -0.3318 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 0.2172 2.3146 -0.0017 28 1 3.1615 6.7483 1.6588 29 1 3.8514 4.6322 0.0006 30 1 3.6322 -0.6412 -1.8186 31 1 5.1274 0.3245 -1.8142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040549358.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:34 Heat of formation + Delta-G solvation = -211.471291 kcal Electronic energy + Delta-G solvation = -23513.159513 eV Core-core repulsion = 19198.456066 eV Total energy + Delta-G solvation = -4314.703446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 353.987 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.81880 -47.39626 -47.24490 -39.44403 -37.48496 -36.43383 -33.66395 -31.13050 -30.10659 -28.69426 -28.02071 -26.92152 -24.98605 -23.00399 -21.30045 -20.84201 -18.44195 -18.29934 -18.07313 -17.39031 -16.87737 -16.05218 -15.79778 -15.19596 -15.08473 -14.37235 -14.27036 -13.89261 -13.82170 -13.73409 -13.51607 -13.45736 -13.44907 -13.06946 -12.89716 -12.23739 -11.90971 -11.55889 -11.45697 -11.24192 -11.16250 -10.83912 -10.79848 -10.43362 -10.21276 -9.80552 -9.42228 -9.32846 -9.12496 -7.72072 -7.26739 -7.13619 -4.77238 2.07714 2.52363 2.56420 2.82704 2.89216 2.92798 2.97693 3.65634 3.79272 4.02973 4.11945 4.31312 4.32165 4.97960 5.22655 5.44129 5.50819 5.54227 5.61987 5.82087 6.23584 6.37199 6.48138 6.60823 6.78706 6.88180 7.34457 7.43043 7.69991 7.83158 8.03421 8.23630 8.44025 8.59236 9.77760 Molecular weight = 353.99amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.004557 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.190933 B = 6142.395348 C = 7698.931319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.319 6.319 3 C 0.160 3.840 4 C -0.303 4.303 5 C 0.142 3.858 6 C -0.437 4.437 7 H 0.088 0.912 8 C 0.073 3.927 9 N -0.769 5.769 10 Si 0.915 3.085 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.257 1.257 14 C -0.148 4.148 15 C -0.031 4.031 16 Br -0.082 7.082 17 C -0.074 4.074 18 O -0.286 6.286 19 C 0.009 3.991 20 C 0.462 3.538 21 F -0.178 7.178 22 F -0.185 7.185 23 F -0.176 7.176 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.290 0.710 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -5.243 -4.135 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C 0.114 3.886 4 C -0.323 4.323 5 C 0.138 3.862 6 C -0.465 4.465 7 H 0.106 0.894 8 C -0.149 4.149 9 N -0.391 5.391 10 Si 0.739 3.261 11 H -0.191 1.191 12 H -0.196 1.196 13 H -0.181 1.181 14 C -0.169 4.169 15 C -0.111 4.111 16 Br 0.003 6.997 17 C -0.121 4.121 18 O -0.203 6.203 19 C -0.068 4.068 20 C 0.408 3.592 21 F -0.159 7.159 22 F -0.166 7.166 23 F -0.158 7.158 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.154 0.846 30 H 0.105 0.895 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.486 -5.378 -3.813 7.046 hybrid contribution -0.890 0.784 -0.235 1.210 sum 1.596 -4.594 -4.048 6.327 Atomic orbital electron populations 1.22884 0.79740 1.02384 1.01252 1.86025 1.20251 1.27883 1.89138 1.18863 0.90336 0.83882 0.95506 1.20976 0.98336 0.91499 1.21502 1.17372 0.91090 0.91854 0.85901 1.19669 1.01364 0.92425 1.33032 0.89440 1.26079 0.94358 1.01982 0.92464 1.69814 1.17968 1.31731 1.19631 0.86172 0.79754 0.79752 0.80471 1.19074 1.19622 1.18079 1.21049 0.93923 0.96011 1.05919 1.21275 0.87723 0.94952 1.07118 1.96473 1.06318 1.99029 1.97885 1.16754 0.85466 0.83440 1.26416 1.86240 1.71389 1.39959 1.22680 1.23760 0.99415 0.91893 0.91776 1.20326 0.79092 0.86276 0.73525 1.93188 1.75599 1.68355 1.78772 1.93161 1.92678 1.87767 1.43038 1.93199 1.51092 1.93031 1.78438 0.89423 0.93200 0.92966 0.86933 0.89867 0.84611 0.89516 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.32 -6.27 10.28 -34.18 -0.35 -6.62 16 3 C 0.16 3.50 6.70 -39.15 -0.26 3.24 16 4 C -0.30 -6.70 8.78 -38.76 -0.34 -7.04 16 5 C 0.14 3.40 5.56 -106.82 -0.59 2.81 16 6 C -0.44 -10.18 9.04 -37.85 -0.34 -10.53 16 7 H 0.09 1.92 7.90 -52.49 -0.41 1.50 16 8 C 0.07 1.62 5.14 -17.34 -0.09 1.53 16 9 N -0.77 -17.84 10.96 55.54 0.61 -17.23 16 10 Si 0.92 16.48 29.59 -169.99 -5.03 11.45 16 11 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 12 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 13 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 14 C -0.15 -3.52 8.34 -39.21 -0.33 -3.85 16 15 C -0.03 -0.70 6.19 -39.82 -0.25 -0.95 16 16 Br -0.08 -1.61 33.05 -68.01 -2.25 -3.86 16 17 C -0.07 -1.65 5.75 -38.63 -0.22 -1.87 16 18 O -0.29 -5.99 9.03 -33.52 -0.30 -6.29 16 19 C 0.01 0.15 6.02 37.16 0.22 0.37 16 20 C 0.46 7.41 3.32 37.16 0.12 7.53 16 21 F -0.18 -3.00 17.26 2.25 0.04 -2.96 16 22 F -0.18 -2.68 17.32 2.25 0.04 -2.64 16 23 F -0.18 -2.99 17.26 2.25 0.04 -2.95 16 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 26 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 27 H 0.11 2.26 6.29 -52.48 -0.33 1.93 16 28 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 29 H 0.14 3.32 6.18 -52.49 -0.32 3.00 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.41 8.07 -51.93 -0.42 1.00 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -25.38 309.05 -5.90 -31.28 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -2.26 Total: 2.44 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.09 Total: -7.28 kcal Atomic # 7 Polarization: -17.84 SS G_CDS: 0.61 Total: -17.23 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.65 Total: -12.91 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 0.12 Total: -8.55 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -2.25 Total: -3.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.38 -5.90 -31.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040549358.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.193 kcal (2) G-P(sol) polarization free energy of solvation -25.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds