Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39760 * 125.83771 * 2 1 4 4 C 1.36102 * 107.82496 * 180.02562 * 3 2 1 5 5 N 1.39501 * 126.21591 * 179.97438 * 4 3 2 6 6 C 1.34781 * 120.00007 * 0.02562 * 5 4 3 7 7 O 1.21588 * 119.99692 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99722 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99406 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46839 * 178.96118 * 9 8 6 11 11 C 1.50699 * 115.54773 * 279.62763 * 10 9 8 12 12 C 1.38229 * 120.00170 * 113.77574 * 11 10 9 13 13 C 1.38238 * 119.99851 * 179.74016 * 12 11 10 14 14 C 1.38230 * 120.00092 * 0.52772 * 13 12 11 15 15 C 1.38235 * 119.99812 * 359.74808 * 14 13 12 16 16 C 1.38232 * 120.00046 * 359.97188 * 15 14 13 17 17 C 1.52999 * 117.49986 * 133.91286 * 10 9 8 18 18 C 1.53000 * 60.00241 * 252.51144 * 17 10 9 19 19 N 1.35246 * 107.56897 * 0.02562 * 4 3 2 20 20 C 1.46510 * 126.04428 * 179.73914 * 19 4 3 21 21 C 1.50697 * 109.47161 * 89.99902 * 20 19 4 22 22 H 1.08006 * 120.00043 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00022 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99785 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99948 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47783 * 89.99618 * 25 23 21 27 27 H 1.48504 * 109.46912 * 209.99878 * 25 23 21 28 28 H 1.48507 * 109.47068 * 329.99285 * 25 23 21 29 29 N 1.30845 * 125.83820 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47266 * 90.00393 * 1 2 3 31 31 H 1.09005 * 109.47229 * 209.99952 * 1 2 3 32 32 H 1.08999 * 109.47504 * 329.99645 * 1 2 3 33 33 H 1.08000 * 126.08830 * 0.05750 * 3 2 1 34 34 H 0.97008 * 120.00061 * 180.02562 * 5 4 3 35 35 H 0.96998 * 120.00215 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.47182 * 298.95733 * 9 8 6 37 37 H 1.08993 * 109.46920 * 58.96048 * 9 8 6 38 38 H 1.08000 * 120.00241 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.00072 * 180.29098 * 13 12 11 40 40 H 1.08004 * 120.00304 * 179.76814 * 14 13 12 41 41 H 1.08000 * 119.99874 * 179.97438 * 15 14 13 42 42 H 1.08000 * 119.99826 * 179.97438 * 16 15 14 43 43 H 1.08999 * 117.49606 * 0.02562 * 17 10 9 44 44 H 1.09000 * 117.49494 * 145.01383 * 17 10 9 45 45 H 1.08996 * 117.49921 * 252.50947 * 18 17 10 46 46 H 1.09003 * 117.51473 * 107.47797 * 18 17 10 47 47 H 1.08996 * 109.46848 * 209.99746 * 20 19 4 48 48 H 1.08996 * 109.46657 * 330.00001 * 20 19 4 49 49 H 0.97001 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7515 1.5276 -0.0013 6 6 4.6159 2.8686 -0.0009 7 8 3.5071 3.3675 0.0005 8 7 5.7095 3.6564 -0.0021 9 6 5.5621 5.1140 -0.0011 10 6 6.9458 5.7664 0.0233 11 6 7.6083 5.8348 1.3751 12 6 8.7581 5.1072 1.6189 13 6 9.3688 5.1742 2.8573 14 6 8.8236 5.9600 3.8552 15 6 7.6706 6.6831 3.6132 16 6 7.0632 6.6207 2.3731 17 6 7.1996 6.9214 -0.9476 18 6 7.8471 5.5574 -1.1953 19 7 3.6091 -0.6403 -0.0015 20 6 4.7870 -1.5115 -0.0078 21 6 5.1977 -1.8112 1.4109 22 1 4.6376 -1.3941 2.2348 23 6 6.2891 -2.6171 1.6570 24 7 6.9713 -3.1245 0.6537 25 14 6.7977 -2.9892 3.4155 26 1 6.1005 -4.2137 3.8840 27 1 8.2661 -3.2036 3.4712 28 1 6.4310 -1.8458 4.2893 29 7 2.2731 -1.0607 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.9902 2.1597 0.0009 34 1 5.6361 1.1295 -0.0020 35 1 6.5940 3.2583 -0.0036 36 1 5.0292 5.4259 -0.8994 37 1 4.9997 5.4217 0.8803 38 1 9.1815 4.4895 0.8408 39 1 10.2698 4.6094 3.0463 40 1 9.2986 6.0094 4.8240 41 1 7.2444 7.2968 4.3930 42 1 6.1621 7.1854 2.1842 43 1 6.3806 7.2166 -1.6034 44 1 7.8457 7.7311 -0.6085 45 1 8.9192 5.4699 -1.0194 46 1 7.4543 4.9549 -2.0143 47 1 4.5474 -2.4427 -0.5211 48 1 5.6058 -1.0116 -0.5251 49 1 7.7394 -3.6912 0.8269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043793741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = 98.459193 kcal Electronic energy + Delta-G solvation = -30672.000205 eV Core-core repulsion = 26601.538415 eV Total energy + Delta-G solvation = -4070.461790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86208 -40.20994 -39.24644 -37.53094 -34.63054 -34.11183 -33.70508 -32.00958 -31.14687 -30.83483 -29.14554 -28.39645 -26.80683 -25.96996 -23.42195 -23.39142 -22.81418 -22.08322 -21.51850 -20.09519 -19.65296 -19.45717 -17.74746 -17.19142 -16.87429 -16.55609 -15.89011 -15.60340 -15.27867 -15.13809 -14.89307 -14.59432 -14.51591 -14.11378 -14.06913 -13.70724 -13.62055 -13.08001 -12.85091 -12.80150 -12.71706 -12.44972 -12.40610 -11.99174 -11.83138 -11.73501 -11.53162 -11.42475 -11.27248 -11.06144 -10.87960 -10.79758 -10.47778 -10.34524 -10.28229 -10.00217 -9.78306 -9.46023 -9.15337 -9.09224 -8.90201 -8.70618 -7.84389 -7.30623 -6.31909 -4.39918 1.11769 1.20096 2.43700 2.63670 3.17486 3.24126 3.27363 3.32063 3.38548 3.57641 3.73459 3.78595 4.20523 4.23657 4.28905 4.35348 4.53923 4.72175 4.81430 4.82104 4.92495 5.01529 5.22609 5.30563 5.37279 5.37918 5.43627 5.52456 5.56811 5.63716 5.70661 5.77838 5.83177 5.84459 6.08190 6.18396 6.24426 6.27343 6.30852 6.31713 6.33478 6.39941 6.52941 6.76561 6.78462 6.90469 7.07178 7.18214 7.60404 7.64649 7.82259 7.91360 8.14863 8.63686 8.71179 8.77683 9.27545 10.75151 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.007587 B = 0.003203 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3689.410076 B = 8740.162392 C =11067.809560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.051 3.949 3 C -0.297 4.297 4 C 0.322 3.678 5 N -0.653 5.653 6 C 0.715 3.285 7 O -0.568 6.568 8 N -0.738 5.738 9 C 0.184 3.816 10 C -0.110 4.110 11 C -0.046 4.046 12 C -0.112 4.112 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.108 4.108 17 C -0.150 4.150 18 C -0.165 4.165 19 N -0.347 5.347 20 C 0.258 3.742 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.891 5.891 25 Si 0.905 3.095 26 H -0.276 1.276 27 H -0.283 1.283 28 H -0.272 1.272 29 N -0.289 5.289 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.412 0.588 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 21.255 -0.992 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C -0.329 4.329 4 C 0.098 3.902 5 N -0.302 5.302 6 C 0.414 3.586 7 O -0.444 6.444 8 N -0.394 5.394 9 C 0.060 3.940 10 C -0.110 4.110 11 C -0.046 4.046 12 C -0.130 4.130 13 C -0.136 4.136 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.126 4.126 17 C -0.187 4.187 18 C -0.202 4.202 19 N -0.132 5.132 20 C 0.140 3.860 21 C -0.577 4.577 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.529 5.529 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.209 1.209 28 H -0.197 1.197 29 N -0.114 5.114 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.248 0.752 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.841 20.278 -1.041 20.665 hybrid contribution 1.568 0.018 1.089 1.909 sum 5.408 20.297 0.047 21.005 Atomic orbital electron populations 1.20008 0.87691 1.02365 1.01956 1.22005 0.96442 0.91111 1.01856 1.21225 0.89023 1.00441 1.22242 1.17573 0.87355 0.83011 1.02221 1.41703 1.08273 1.04266 1.75964 1.15506 0.84747 0.80261 0.78074 1.90854 1.23552 1.73423 1.56532 1.44948 1.07674 1.06236 1.80574 1.20617 0.92885 0.77717 1.02740 1.20351 0.96486 1.04855 0.89335 1.18940 0.95096 0.97305 0.93287 1.21054 0.95567 0.99018 0.97361 1.21162 1.00111 0.98925 0.93386 1.21179 0.96427 0.97278 0.99168 1.21140 0.95993 0.99671 0.96915 1.20970 0.99842 0.98872 0.92939 1.23065 1.03308 0.91782 1.00549 1.23100 0.98965 0.99882 0.98294 1.49292 1.06514 1.02046 1.55385 1.19585 0.77884 0.89737 0.98806 1.21361 1.13159 1.31740 0.91454 0.91721 1.24923 0.95721 0.94920 0.98081 1.69918 1.19295 1.32740 1.30902 0.86371 0.77591 0.79109 0.83740 1.20186 1.20884 1.19707 1.77347 0.86025 1.21754 1.26252 0.91443 0.91585 0.91183 0.82057 0.75246 0.76699 0.90967 0.90802 0.85915 0.85983 0.86189 0.86061 0.85971 0.87969 0.88256 0.88166 0.87921 0.92605 0.93957 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.05 7.21 -82.44 -0.59 0.46 16 3 C -0.30 -6.35 9.58 -39.78 -0.38 -6.73 16 4 C 0.32 7.04 7.66 -153.15 -1.17 5.86 16 5 N -0.65 -11.93 5.42 -15.84 -0.09 -12.02 16 6 C 0.71 11.97 8.53 -86.91 -0.74 11.23 16 7 O -0.57 -11.03 13.47 5.29 0.07 -10.96 16 8 N -0.74 -9.08 5.52 -65.22 -0.36 -9.44 16 9 C 0.18 1.93 5.55 -4.04 -0.02 1.91 16 10 C -0.11 -0.91 1.69 -155.66 -0.26 -1.17 16 11 C -0.05 -0.43 5.12 -104.63 -0.54 -0.97 16 12 C -0.11 -1.05 9.22 -39.58 -0.37 -1.41 16 13 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 14 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 15 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 16 C -0.11 -1.01 9.48 -39.59 -0.38 -1.39 16 17 C -0.15 -1.00 9.88 -26.73 -0.26 -1.26 16 18 C -0.17 -1.16 9.37 -26.73 -0.25 -1.41 16 19 N -0.35 -8.33 3.60 -61.57 -0.22 -8.55 16 20 C 0.26 6.54 6.00 -5.19 -0.03 6.51 16 21 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 22 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 25 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 N -0.29 -6.89 12.56 33.65 0.42 -6.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.16 3.40 5.82 -52.49 -0.31 3.09 16 34 H 0.41 6.94 7.98 -40.82 -0.33 6.62 16 35 H 0.40 4.22 8.46 -40.82 -0.35 3.88 16 36 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 37 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 38 H 0.12 0.99 7.06 -52.49 -0.37 0.62 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.65 7.18 -51.93 -0.37 0.28 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.04 1.04 7.51 -51.93 -0.39 0.65 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 414.58 15.07 6.25 6.25 Total: -1.00 -32.70 414.58 -11.57 -44.27 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.12 Total: 11.45 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -6.24 Total: -6.71 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.49 Total: -60.18 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.70 -11.57 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043793741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.728 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds