Wall clock time and date at job start Tue Mar 31 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38383 * 119.84433 * 2 1 4 4 C 1.37939 * 120.15190 * 179.97438 * 3 2 1 5 5 C 1.39658 * 119.84489 * 0.02562 * 4 3 2 6 6 C 1.47704 * 120.15162 * 180.02562 * 5 4 3 7 7 C 1.36285 * 126.68538 * 4.97148 * 6 5 4 8 8 N 1.33540 * 108.28480 * 180.02562 * 7 6 5 9 9 C 1.31587 * 109.65881 * 0.02562 * 8 7 6 10 10 S 1.76198 * 125.69120 * 180.02562 * 9 8 7 11 11 C 1.76201 * 99.99757 * 359.97438 * 10 9 8 12 12 H 1.08001 * 120.00342 * 0.02562 * 11 10 9 13 13 C 1.38609 * 120.00026 * 179.97438 * 11 10 9 14 14 N 1.31668 * 119.99604 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00005 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47494 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47513 * 120.00008 * 15 13 11 18 18 H 1.48502 * 109.47158 * 240.00375 * 15 13 11 19 19 N 1.36565 * 108.62257 * 359.97438 * 9 8 7 20 20 C 1.40189 * 126.59101 * 179.73866 * 19 9 8 21 21 C 1.38838 * 120.04195 * 244.74657 * 20 19 9 22 22 C 1.38111 * 119.95605 * 179.79658 * 21 20 19 23 23 C 1.38479 * 120.04190 * 0.46065 * 22 21 20 24 24 F 1.35102 * 119.95687 * 179.76462 * 23 22 21 25 25 C 1.38486 * 120.08875 * 359.79330 * 23 22 21 26 26 C 1.38104 * 120.03623 * 359.97438 * 25 23 22 27 27 C 1.39661 * 119.69751 * 0.27630 * 5 4 3 28 28 C 1.37943 * 119.84087 * 359.42491 * 27 5 4 29 29 H 1.09003 * 109.47563 * 89.99703 * 1 2 3 30 30 H 1.09001 * 109.47045 * 210.00028 * 1 2 3 31 31 H 1.09004 * 109.47085 * 329.99733 * 1 2 3 32 32 H 1.07996 * 119.92504 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.07361 * 180.02562 * 4 3 2 34 34 H 1.08000 * 125.86304 * 0.04967 * 7 6 5 35 35 H 0.97006 * 119.99743 * 179.97438 * 14 13 11 36 36 H 1.07994 * 120.01781 * 0.02562 * 21 20 19 37 37 H 1.08004 * 119.97839 * 180.23078 * 22 21 20 38 38 H 1.07993 * 119.98010 * 179.97438 * 25 23 22 39 39 H 1.08003 * 120.01736 * 180.02562 * 26 25 23 40 40 H 1.08002 * 120.07694 * 179.70130 * 27 5 4 41 41 H 1.07995 * 119.91845 * 180.29329 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2003 0.0000 4 6 3.5750 1.2077 0.0005 5 6 4.2765 0.0001 0.0005 6 6 5.7535 0.0001 0.0017 7 6 6.5676 1.0889 0.0975 8 7 7.8348 0.6690 0.0612 9 6 7.8638 -0.6414 -0.0543 10 16 9.3171 -1.6339 -0.1403 11 6 10.5505 -0.3804 -0.0294 12 1 10.2606 0.6559 0.0618 13 6 11.8929 -0.7246 -0.0580 14 7 12.2463 -1.9882 -0.1677 15 14 13.2004 0.6043 0.0589 16 1 12.5471 1.9330 0.1732 17 1 14.0457 0.3632 1.2558 18 1 14.0479 0.5734 -1.1602 19 7 6.5796 -1.1041 -0.0952 20 6 6.1766 -2.4412 -0.2182 21 6 5.4841 -2.8574 -1.3473 22 6 5.0916 -4.1760 -1.4686 23 6 5.3800 -5.0807 -0.4606 24 9 4.9911 -6.3691 -0.5789 25 6 6.0660 -4.6664 0.6688 26 6 6.4643 -3.3497 0.7915 27 6 3.5750 -1.2076 -0.0059 28 6 2.1956 -1.2002 -0.0001 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6518 2.1334 -0.0004 33 1 4.1112 2.1453 0.0010 34 1 6.2436 2.1152 0.1878 35 1 13.1858 -2.2290 -0.1881 36 1 5.2558 -2.1513 -2.1319 37 1 4.5562 -4.5009 -2.3485 38 1 6.2896 -5.3733 1.4540 39 1 6.9997 -3.0270 1.6722 40 1 4.1113 -2.1450 -0.0108 41 1 1.6520 -2.1333 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044087059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:47 Heat of formation + Delta-G solvation = 63.858650 kcal Electronic energy + Delta-G solvation = -27579.524506 eV Core-core repulsion = 23658.729044 eV Total energy + Delta-G solvation = -3920.795462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.00802 -41.66617 -39.03347 -38.89767 -33.74463 -33.21463 -32.64290 -31.46220 -30.80849 -29.39702 -28.68844 -26.27663 -25.51067 -23.50508 -23.19803 -22.66328 -21.79896 -20.59415 -20.00727 -18.63347 -17.76228 -17.28514 -16.60613 -15.83281 -15.67481 -15.38321 -15.25845 -14.93838 -14.75119 -14.55653 -14.30956 -13.85888 -13.77014 -13.72938 -13.48942 -13.27748 -13.16790 -12.95140 -12.68017 -12.40040 -12.28231 -12.11872 -11.33206 -11.27595 -11.19576 -11.16275 -11.00889 -10.90644 -10.17463 -9.79988 -9.58039 -9.35732 -9.26842 -9.12785 -8.92871 -8.88490 -8.45316 -7.93817 -6.54630 -6.46768 -4.18677 0.76234 1.04856 1.07641 1.44302 2.50599 2.54143 3.16744 3.22460 3.27824 3.34652 3.35621 3.59294 4.00992 4.01362 4.09959 4.60477 4.67092 4.71418 4.79435 4.86090 4.97099 4.99153 5.05027 5.09754 5.17279 5.19482 5.42941 5.43542 5.50774 5.59211 5.66612 5.68839 5.72918 5.87019 5.92351 5.99818 6.01737 6.10912 6.17437 6.38583 6.45918 6.58365 6.59815 6.86865 6.99983 7.16320 7.55724 7.58450 8.38304 8.57792 9.05724 10.61631 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.003597 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.749984 B = 7782.110797 C =10243.829708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.111 4.111 4 C -0.111 4.111 5 C 0.013 3.987 6 C -0.032 4.032 7 C 0.027 3.973 8 N -0.491 5.491 9 C 0.224 3.776 10 S 0.130 5.870 11 C -0.528 4.528 12 H 0.107 0.893 13 C 0.073 3.927 14 N -0.878 5.878 15 Si 0.931 3.069 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.279 1.279 19 N -0.420 5.420 20 C 0.125 3.875 21 C -0.077 4.077 22 C -0.146 4.146 23 C 0.103 3.897 24 F -0.137 7.137 25 C -0.139 4.139 26 C -0.072 4.072 27 C -0.139 4.139 28 C -0.109 4.109 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.167 0.833 35 H 0.273 0.727 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.986 -1.987 -0.104 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.129 4.129 4 C -0.130 4.130 5 C 0.012 3.988 6 C -0.145 4.145 7 C -0.126 4.126 8 N -0.212 5.212 9 C -0.140 4.140 10 S 0.366 5.634 11 C -0.677 4.677 12 H 0.125 0.875 13 C -0.136 4.136 14 N -0.514 5.514 15 Si 0.757 3.243 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.204 1.204 19 N -0.106 5.106 20 C 0.033 3.967 21 C -0.096 4.096 22 C -0.165 4.165 23 C 0.083 3.917 24 F -0.116 7.116 25 C -0.158 4.158 26 C -0.092 4.092 27 C -0.157 4.157 28 C -0.127 4.127 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.184 0.816 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.147 0.853 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.904 -2.956 -0.184 19.134 hybrid contribution -0.032 1.347 0.078 1.349 sum -18.935 -1.609 -0.107 19.004 Atomic orbital electron populations 1.20748 0.91524 1.02455 1.01998 1.19900 0.95823 0.93227 1.01677 1.20865 0.93762 0.97372 1.00938 1.21037 0.93835 0.97016 1.01137 1.17907 0.88562 0.93563 0.98813 1.19442 0.89967 0.86738 1.18399 1.22380 0.88890 0.97573 1.03725 1.70757 1.20379 1.07342 1.22700 1.27197 0.89830 0.94237 1.02779 1.83584 0.87151 1.07171 1.85481 1.23265 0.90794 0.96063 1.57568 0.87538 1.25076 0.98062 0.96727 0.93700 1.69981 1.18359 1.16168 1.46857 0.85893 0.79661 0.80887 0.77906 1.18915 1.20422 1.20432 1.42729 1.05781 1.03332 1.58736 1.17562 1.00522 0.83302 0.95271 1.21040 0.96824 0.95610 0.96165 1.20959 1.03567 0.92429 0.99569 1.17720 0.99062 0.78860 0.96024 1.91506 1.89011 1.34895 1.96183 1.21022 1.00163 0.96537 0.98070 1.21147 0.97712 0.91996 0.98346 1.21732 0.94435 0.98151 1.01432 1.20864 0.93806 0.97322 1.00751 0.91496 0.91835 0.91785 0.86091 0.85642 0.81618 0.91750 0.84353 0.83918 0.83710 0.83788 0.85309 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.00 36.00 0.36 -0.49 16 2 C -0.11 -1.13 5.89 -104.52 -0.62 -1.75 16 3 C -0.11 -1.22 9.68 -39.64 -0.38 -1.60 16 4 C -0.11 -1.41 9.58 -39.16 -0.38 -1.78 16 5 C 0.01 0.20 5.87 -104.97 -0.62 -0.42 16 6 C -0.03 -0.58 6.80 -81.81 -0.56 -1.13 16 7 C 0.03 0.52 11.26 -17.51 -0.20 0.32 16 8 N -0.49 -11.35 9.96 -13.02 -0.13 -11.48 16 9 C 0.22 5.07 7.88 -88.06 -0.69 4.38 16 10 S 0.13 3.22 21.32 -107.50 -2.29 0.93 16 11 C -0.53 -14.63 9.36 30.87 0.29 -14.34 16 12 H 0.11 3.03 6.88 -52.49 -0.36 2.67 16 13 C 0.07 1.98 5.49 -17.49 -0.10 1.89 16 14 N -0.88 -24.49 13.22 55.48 0.73 -23.76 16 15 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 N -0.42 -7.94 2.85 -56.88 -0.16 -8.10 16 20 C 0.12 2.01 3.67 -83.59 -0.31 1.70 16 21 C -0.08 -1.05 7.13 -39.41 -0.28 -1.33 16 22 C -0.15 -1.70 10.01 -39.54 -0.40 -2.09 16 23 C 0.10 1.25 7.30 -39.40 -0.29 0.97 16 24 F -0.14 -1.66 17.27 2.25 0.04 -1.63 16 25 C -0.14 -1.71 10.02 -39.54 -0.40 -2.11 16 26 C -0.07 -1.07 9.74 -39.41 -0.38 -1.45 16 27 C -0.14 -1.89 8.66 -39.16 -0.34 -2.23 16 28 C -0.11 -1.27 9.68 -39.64 -0.38 -1.65 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.41 7.07 -52.48 -0.37 1.04 16 34 H 0.17 2.55 7.32 -52.49 -0.38 2.17 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.14 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.13 1.76 3.71 -52.49 -0.19 1.57 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -30.84 369.46 -11.17 -42.01 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.24 Total: 3.51 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -5.66 Total: -23.14 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.44 Total: -43.34 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.29 Total: 0.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.84 -11.17 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044087059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.870 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds