Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48508 * 109.47327 * 240.00079 * 3 2 1 5 5 H 1.48499 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47191 * 120.00115 * 3 2 1 7 7 C 1.38751 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00065 * 179.97438 * 7 2 1 9 9 O 1.34916 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.34311 * 117.00244 * 180.02562 * 9 7 2 11 11 O 1.21201 * 120.00058 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99998 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47286 * 59.99745 * 12 10 9 14 14 N 1.46494 * 109.47219 * 179.97438 * 12 10 9 15 15 C 1.34777 * 120.00188 * 204.99927 * 14 12 10 16 16 O 1.21503 * 119.99670 * 359.97438 * 15 14 12 17 17 O 1.34640 * 119.99799 * 180.02562 * 15 14 12 18 18 C 1.45195 * 116.99731 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47328 * 180.02562 * 18 17 15 20 20 C 1.38240 * 119.99405 * 269.72695 * 19 18 17 21 21 C 1.38240 * 119.99484 * 179.76328 * 20 19 18 22 22 C 1.38229 * 120.00153 * 0.50741 * 21 20 19 23 23 C 1.38234 * 120.00274 * 359.74352 * 22 21 20 24 24 C 1.38229 * 120.00372 * 89.99765 * 19 18 17 25 25 C 1.50703 * 109.46901 * 300.00341 * 12 10 9 26 26 C 1.38235 * 120.00292 * 100.00039 * 25 12 10 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 12 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 279.97332 * 25 12 10 31 31 H 0.97008 * 119.99557 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99923 * 25.00258 * 14 12 10 33 33 H 1.08999 * 109.47247 * 299.99877 * 18 17 15 34 34 H 1.08999 * 109.47533 * 59.99752 * 18 17 15 35 35 H 1.07999 * 120.00370 * 359.97438 * 20 19 18 36 36 H 1.07999 * 119.99591 * 180.22964 * 21 20 19 37 37 H 1.08003 * 120.00033 * 179.72423 * 22 21 20 38 38 H 1.07999 * 120.00737 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00222 * 0.02562 * 24 19 18 40 40 H 1.08001 * 119.99730 * 359.97438 * 26 25 12 41 41 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 43 43 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 44 44 H 1.07997 * 120.00455 * 0.02562 * 30 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2126 5 1 1.2835 2.7464 -0.0006 6 1 3.1022 1.6963 1.2124 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2754 -3.4331 -0.0001 12 6 1.3808 -4.8393 -0.0011 13 1 0.7583 -4.9295 -0.8913 14 7 2.3897 -5.9015 -0.0016 15 6 2.0868 -7.1184 -0.4954 16 8 0.9768 -7.3346 -0.9397 17 8 3.0140 -8.0947 -0.4954 18 6 2.6180 -9.3797 -1.0432 19 6 3.7762 -10.3402 -0.9590 20 6 4.6723 -10.4358 -2.0073 21 6 5.7376 -11.3132 -1.9280 22 6 5.9008 -12.1026 -0.8051 23 6 5.0018 -12.0107 0.2410 24 6 3.9394 -11.1295 0.1640 25 6 0.5193 -4.9645 1.2290 26 6 -0.8434 -4.7487 1.1434 27 6 -1.6337 -4.8641 2.2716 28 6 -1.0615 -5.1963 3.4853 29 6 0.3010 -5.4135 3.5707 30 6 1.0917 -5.2959 2.4428 31 1 -0.4850 0.8402 -0.0004 32 1 3.2758 -5.7289 0.3535 33 1 1.7771 -9.7743 -0.4729 34 1 2.3237 -9.2553 -2.0853 35 1 4.5422 -9.8225 -2.8867 36 1 6.4398 -11.3853 -2.7454 37 1 6.7305 -12.7914 -0.7450 38 1 5.1289 -12.6277 1.1182 39 1 3.2366 -11.0583 0.9809 40 1 -1.2906 -4.4898 0.1950 41 1 -2.6983 -4.6950 2.2049 42 1 -1.6782 -5.2821 4.3678 43 1 0.7482 -5.6726 4.5190 44 1 2.1563 -5.4645 2.5097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044122803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -98.864551 kcal Electronic energy + Delta-G solvation = -30222.949000 eV Core-core repulsion = 25878.086103 eV Total energy + Delta-G solvation = -4344.862898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64974 -39.71107 -39.16786 -38.48347 -36.68916 -35.55518 -34.37998 -32.48512 -32.24138 -31.21055 -31.13180 -30.53067 -27.55019 -26.48214 -25.07670 -22.89313 -22.44847 -21.93367 -21.71780 -21.25226 -19.91849 -18.94995 -17.85223 -17.37870 -17.04733 -16.58842 -16.35313 -16.15543 -15.50060 -15.31871 -15.30104 -15.05019 -14.63773 -14.38794 -14.26313 -13.77713 -13.73789 -13.54923 -13.26765 -13.13462 -13.04459 -12.60901 -12.54421 -12.44122 -12.02664 -11.65568 -11.39978 -11.39439 -11.26587 -11.02338 -10.74259 -10.66162 -10.55862 -10.50596 -10.48177 -9.93175 -9.53222 -9.21914 -9.18484 -9.10460 -8.65325 -8.55782 -8.36294 -6.48698 -4.16936 0.84835 1.10526 1.60004 1.76481 2.23027 2.90513 3.05247 3.15147 3.19007 3.35877 3.48435 3.82383 4.08507 4.21688 4.50656 4.51858 4.65807 4.73010 4.82294 4.93468 4.98031 5.07176 5.14757 5.18202 5.24168 5.29437 5.34872 5.41687 5.58491 5.64148 5.73332 5.82944 5.89935 6.11078 6.13553 6.19433 6.22958 6.27040 6.36072 6.38620 6.59153 6.66327 6.74355 6.81177 6.91806 7.29175 7.31096 7.53803 7.83774 8.42920 8.52887 8.98604 9.69215 10.67942 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002492 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.800137 B =11233.061506 C =12781.904319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.046 3.954 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.384 4.384 8 H 0.097 0.903 9 O -0.195 6.195 10 C 0.394 3.606 11 O -0.549 6.549 12 C 0.223 3.777 13 H 0.124 0.876 14 N -0.685 5.685 15 C 0.655 3.345 16 O -0.570 6.570 17 O -0.363 6.363 18 C 0.129 3.871 19 C -0.097 4.097 20 C -0.093 4.093 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.093 4.093 25 C -0.087 4.087 26 C -0.078 4.078 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.126 4.126 30 C -0.100 4.100 31 H 0.272 0.728 32 H 0.416 0.584 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -20.565 1.808 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.460 4.460 8 H 0.115 0.885 9 O -0.100 6.100 10 C 0.240 3.760 11 O -0.447 6.447 12 C 0.118 3.882 13 H 0.142 0.858 14 N -0.345 5.345 15 C 0.408 3.592 16 O -0.458 6.458 17 O -0.278 6.278 18 C 0.054 3.946 19 C -0.097 4.097 20 C -0.111 4.111 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.111 4.111 25 C -0.089 4.089 26 C -0.097 4.097 27 C -0.138 4.138 28 C -0.137 4.137 29 C -0.144 4.144 30 C -0.118 4.118 31 H 0.082 0.918 32 H 0.254 0.746 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.659 -20.529 1.553 20.910 hybrid contribution 0.810 0.907 0.143 1.225 sum 4.469 -19.621 1.696 20.195 Atomic orbital electron populations 1.69991 1.05983 1.28013 1.45193 1.25355 0.95853 0.98861 0.95895 0.85720 0.78668 0.79241 0.79425 1.19386 1.20281 1.19396 1.21214 0.92441 0.79452 1.52894 0.88510 1.83853 1.38894 1.12921 1.74302 1.22546 0.86475 0.86805 0.80167 1.90564 1.15150 1.87407 1.51623 1.18843 0.87493 0.83091 0.98823 0.85835 1.44252 1.17602 1.07869 1.64819 1.17859 0.82468 0.81260 0.77647 1.90996 1.21698 1.81842 1.51288 1.86303 1.42362 1.21212 1.77894 1.21692 0.94743 0.78289 0.99833 1.19564 0.97228 0.97424 0.95464 1.21152 0.93700 0.97727 0.98492 1.21173 0.97991 0.96627 0.98455 1.21242 0.98945 0.98930 0.93772 1.21167 0.95026 0.99104 0.99002 1.21132 0.97834 0.95316 0.96828 1.19747 0.94094 1.01052 0.93973 1.20974 0.92510 0.96888 0.99296 1.21063 0.99818 1.00206 0.92685 1.21099 0.95039 1.00015 0.97566 1.20998 0.94000 1.01469 0.97956 1.20877 0.99652 0.99153 0.92150 0.91837 0.74608 0.90135 0.90107 0.85602 0.85714 0.85909 0.85744 0.85660 0.85432 0.85970 0.86392 0.86339 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.43 13.67 55.48 0.76 -23.67 16 2 C 0.05 1.26 5.49 -17.53 -0.10 1.16 16 3 Si 0.95 20.89 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.38 -11.06 9.64 30.92 0.30 -10.77 16 8 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 9 O -0.19 -5.41 9.66 -20.69 -0.20 -5.61 16 10 C 0.39 9.52 7.25 36.01 0.26 9.78 16 11 O -0.55 -14.01 15.07 -19.04 -0.29 -14.30 16 12 C 0.22 4.38 2.68 -70.23 -0.19 4.19 16 13 H 0.12 2.41 7.44 -51.93 -0.39 2.02 16 14 N -0.69 -11.91 4.20 -61.01 -0.26 -12.17 16 15 C 0.66 11.04 8.71 54.06 0.47 11.51 16 16 O -0.57 -10.71 15.79 -19.27 -0.30 -11.02 16 17 O -0.36 -5.29 10.25 -40.33 -0.41 -5.70 16 18 C 0.13 1.51 5.60 36.01 0.20 1.71 16 19 C -0.10 -1.00 5.52 -104.62 -0.58 -1.58 16 20 C -0.09 -0.88 9.70 -39.58 -0.38 -1.26 16 21 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.11 -0.85 10.05 -39.59 -0.40 -1.25 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 24 C -0.09 -0.87 9.70 -39.58 -0.38 -1.25 16 25 C -0.09 -1.63 4.84 -104.62 -0.51 -2.14 16 26 C -0.08 -1.40 9.67 -39.59 -0.38 -1.78 16 27 C -0.12 -1.87 10.05 -39.59 -0.40 -2.27 16 28 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 29 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 30 C -0.10 -1.71 9.32 -39.58 -0.37 -2.08 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.42 6.98 7.90 -40.82 -0.32 6.66 16 33 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 2.20 8.04 -52.49 -0.42 1.77 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.12 1.88 7.72 -52.49 -0.41 1.48 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -33.81 394.81 -9.07 -42.88 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.25 Total: 11.03 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -4.04 Total: -3.26 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.50 Total: -35.84 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.20 Total: -36.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.81 -9.07 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044122803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.981 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds