Wall clock time and date at job start Tue Mar 31 2020 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48504 * 109.46854 * 274.89963 * 3 2 1 5 5 H 1.48497 * 109.46837 * 34.89625 * 3 2 1 6 6 H 1.48499 * 109.47495 * 154.89790 * 3 2 1 7 7 C 1.38645 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99997 * 5.29889 * 7 2 1 9 9 O 1.34804 * 119.99986 * 185.29316 * 7 2 1 10 10 C 1.35607 * 116.99922 * 185.44117 * 9 7 2 11 11 C 1.38725 * 120.16029 * 92.87906 * 10 9 7 12 12 C 1.38115 * 120.08427 * 180.27565 * 11 10 9 13 13 C 1.38520 * 120.40843 * 359.69579 * 12 11 10 14 14 C 1.37889 * 120.31916 * 0.02562 * 13 12 11 15 15 C 1.39691 * 119.90435 * 0.02562 * 14 13 12 16 16 C 1.47292 * 120.20041 * 179.97438 * 15 14 13 17 17 N 1.29863 * 120.00147 * 176.25631 * 16 15 14 18 18 N 1.40096 * 120.00108 * 185.27891 * 17 16 15 19 19 C 1.34775 * 120.00233 * 183.83391 * 18 17 16 20 20 O 1.21633 * 120.00199 * 354.85365 * 19 18 17 21 21 C 1.47558 * 120.00296 * 174.84931 * 19 18 17 22 22 C 1.39727 * 120.08315 * 0.02562 * 21 19 18 23 23 C 1.37766 * 120.00221 * 179.71151 * 22 21 19 24 24 C 1.38865 * 120.22170 * 0.52865 * 23 22 21 25 25 C 1.39556 * 120.05702 * 359.47467 * 24 23 22 26 26 C 1.38123 * 119.98298 * 0.26219 * 25 24 23 27 27 O 1.36538 * 108.59282 * 180.24428 * 25 24 23 28 28 C 1.43971 * 105.45095 * 342.68757 * 27 25 24 29 29 O 1.36360 * 131.35406 * 179.78815 * 24 23 22 30 30 H 0.96999 * 119.99824 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.95400 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.79482 * 179.72633 * 12 11 10 33 33 H 1.07999 * 119.84478 * 180.02562 * 13 12 11 34 34 H 1.07995 * 120.04905 * 179.97438 * 14 13 12 35 35 H 1.07995 * 119.99617 * 356.25886 * 16 15 14 36 36 H 0.97002 * 120.00376 * 3.83597 * 18 17 16 37 37 H 1.07997 * 120.00069 * 359.97438 * 22 21 19 38 38 H 1.07999 * 119.89305 * 180.30113 * 23 22 21 39 39 H 1.07995 * 120.04631 * 180.02562 * 26 25 24 40 40 H 1.09001 * 110.56668 * 268.61955 * 28 27 25 41 41 H 1.08997 * 110.56944 * 145.76242 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.3936 2.1062 -1.3950 5 1 1.5027 2.6205 0.8010 6 1 3.5952 1.4125 0.5939 7 6 2.0088 -1.2007 0.0005 8 1 1.4723 -2.1340 -0.0854 9 8 3.3526 -1.2032 0.1082 10 6 3.9776 -2.4006 -0.0116 11 6 4.4471 -2.8212 -1.2474 12 6 5.0784 -4.0436 -1.3687 13 6 5.2535 -4.8554 -0.2601 14 6 4.7984 -4.4514 0.9773 15 6 4.1572 -3.2181 1.1149 16 6 3.6680 -2.7804 2.4335 17 7 3.1378 -1.6029 2.5713 18 7 2.7739 -1.1431 3.8436 19 6 2.1535 0.0457 3.9786 20 8 1.9931 0.7617 3.0084 21 6 1.6686 0.4788 5.3032 22 6 1.8522 -0.3420 6.4190 23 6 1.4041 0.0666 7.6560 24 6 0.7595 1.2884 7.7973 25 6 0.5730 2.1129 6.6869 26 6 1.0249 1.7110 5.4451 27 8 -0.0742 3.2457 7.0896 28 6 -0.6439 2.9264 8.3727 29 8 0.2295 1.9062 8.8913 30 1 -0.4850 0.8400 0.0004 31 1 4.3145 -2.1940 -2.1166 32 1 5.4382 -4.3683 -2.3338 33 1 5.7488 -5.8093 -0.3653 34 1 4.9369 -5.0880 1.8387 35 1 3.7503 -3.4386 3.2857 36 1 2.9685 -1.6803 4.6275 37 1 2.3491 -1.2949 6.3124 38 1 1.5512 -0.5671 8.5180 39 1 0.8814 2.3484 4.5852 40 1 -1.6567 2.5406 8.2566 41 1 -0.6387 3.8015 9.0224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044393749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:25 Heat of formation + Delta-G solvation = 8.661732 kcal Electronic energy + Delta-G solvation = -30266.001126 eV Core-core repulsion = 25887.686486 eV Total energy + Delta-G solvation = -4378.314641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42686 -39.62911 -39.07237 -37.35767 -36.57151 -36.21105 -35.84557 -32.56782 -31.72912 -30.94177 -30.62729 -29.64442 -28.74599 -26.21006 -24.69153 -24.22235 -23.25171 -22.79885 -21.67939 -20.76129 -20.11713 -18.50532 -18.20469 -17.64024 -17.61125 -17.19834 -16.60036 -16.40245 -15.88530 -15.23626 -14.85395 -14.71738 -14.65152 -14.27244 -14.17591 -14.10319 -13.74343 -13.52558 -13.28451 -13.14558 -13.06785 -12.92463 -12.83006 -12.01889 -11.95880 -11.59458 -11.44545 -11.39916 -11.13594 -11.05321 -10.63251 -10.07607 -9.95379 -9.58626 -9.31388 -9.24548 -9.14848 -9.09741 -8.37628 -8.11487 -7.98902 -7.48511 -5.80151 -3.48841 0.51326 0.96792 1.36835 1.94657 2.37266 2.65226 2.85875 3.13479 3.22111 3.65042 3.78447 3.83880 3.96070 4.16525 4.34951 4.37958 4.52811 4.64438 4.71612 4.80139 4.88759 4.95513 5.01831 5.21306 5.25650 5.33594 5.41829 5.57270 5.65329 5.68363 5.80924 5.81869 5.88416 5.93249 5.99574 6.07977 6.18755 6.46578 6.58344 6.81373 6.85056 6.93772 7.18302 7.38744 7.49462 8.05871 8.11845 8.57562 8.88256 9.61160 10.18318 11.30959 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.002992 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.368749 B = 9355.197673 C =10923.514988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.077 3.923 3 Si 0.920 3.080 4 H -0.303 1.303 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.340 4.340 8 H 0.074 0.926 9 O -0.255 6.255 10 C 0.184 3.816 11 C -0.154 4.154 12 C -0.097 4.097 13 C -0.157 4.157 14 C -0.085 4.085 15 C -0.091 4.091 16 C 0.080 3.920 17 N -0.144 5.144 18 N -0.587 5.587 19 C 0.569 3.431 20 O -0.457 6.457 21 C -0.108 4.108 22 C -0.077 4.077 23 C -0.107 4.107 24 C 0.052 3.948 25 C 0.026 3.974 26 C -0.038 4.038 27 O -0.304 6.304 28 C 0.212 3.788 29 O -0.308 6.308 30 H 0.266 0.734 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.371 0.629 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -4.284 16.623 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.122 4.122 3 Si 0.750 3.250 4 H -0.231 1.231 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.415 4.415 8 H 0.092 0.908 9 O -0.167 6.167 10 C 0.136 3.864 11 C -0.173 4.173 12 C -0.117 4.117 13 C -0.175 4.175 14 C -0.106 4.106 15 C -0.094 4.094 16 C -0.131 4.131 17 N 0.052 4.948 18 N -0.330 5.330 19 C 0.355 3.645 20 O -0.326 6.326 21 C -0.113 4.113 22 C -0.096 4.096 23 C -0.125 4.125 24 C 0.007 3.993 25 C -0.019 4.019 26 C -0.058 4.058 27 O -0.220 6.220 28 C 0.101 3.899 29 O -0.224 6.224 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.209 0.791 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.104 0.896 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.129 -2.328 15.803 16.499 hybrid contribution 0.187 -0.304 1.244 1.294 sum 4.317 -2.632 17.047 17.781 Atomic orbital electron populations 1.69667 1.05577 1.27054 1.52856 1.24004 0.94419 0.97890 0.95850 0.85909 0.81157 0.82804 0.75131 1.23099 1.21683 1.18786 1.19983 0.76279 0.94895 1.50391 0.90802 1.83462 1.21281 1.21583 1.90368 1.19114 0.91125 0.85695 0.90510 1.21616 1.01293 0.96661 0.97721 1.21045 0.98162 0.94169 0.98289 1.20791 1.03805 1.00178 0.92764 1.20915 0.97776 0.94343 0.97519 1.18905 1.03376 0.95455 0.91643 1.24198 0.98933 0.93418 0.96530 1.76028 1.05509 1.14570 0.98660 1.47021 1.60112 1.20779 1.05136 1.17584 0.78386 0.80694 0.87863 1.90846 1.51470 1.51436 1.38834 1.19600 1.02694 0.95446 0.93550 1.21069 0.98419 0.99355 0.90781 1.19917 1.01262 0.92806 0.98562 1.20055 0.99910 0.94809 0.84503 1.19554 1.01327 0.86446 0.94543 1.20103 0.95755 0.95328 0.94579 1.87423 1.67933 1.31478 1.35204 1.25679 0.92769 0.90704 0.80791 1.87323 1.59452 1.47514 1.28067 0.92410 0.85530 0.86493 0.86484 0.86250 0.87529 0.79120 0.84156 0.84021 0.82926 0.89591 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.17 13.96 55.48 0.77 -28.39 16 2 C 0.08 2.39 5.39 -17.52 -0.09 2.30 16 3 Si 0.92 26.41 26.05 -169.99 -4.43 21.98 16 4 H -0.30 -8.43 7.11 56.52 0.40 -8.03 16 5 H -0.29 -8.36 7.11 56.52 0.40 -7.96 16 6 H -0.26 -7.75 7.11 56.52 0.40 -7.35 16 7 C -0.34 -10.15 8.98 30.88 0.28 -9.88 16 8 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 9 O -0.25 -6.91 6.95 0.56 0.00 -6.91 16 10 C 0.18 4.11 5.61 -38.61 -0.22 3.89 16 11 C -0.15 -2.95 9.98 -39.45 -0.39 -3.35 16 12 C -0.10 -1.48 10.03 -39.52 -0.40 -1.87 16 13 C -0.16 -2.16 10.03 -39.61 -0.40 -2.56 16 14 C -0.08 -1.24 9.79 -39.17 -0.38 -1.62 16 15 C -0.09 -1.71 5.88 -104.88 -0.62 -2.32 16 16 C 0.08 1.43 10.73 -14.70 -0.16 1.27 16 17 N -0.14 -3.13 7.95 32.13 0.26 -2.87 16 18 N -0.59 -10.40 6.20 30.47 0.19 -10.21 16 19 C 0.57 11.18 7.88 -12.46 -0.10 11.08 16 20 O -0.46 -11.55 13.86 5.25 0.07 -11.47 16 21 C -0.11 -1.63 5.87 -104.98 -0.62 -2.24 16 22 C -0.08 -0.84 9.53 -39.20 -0.37 -1.21 16 23 C -0.11 -1.08 10.04 -39.52 -0.40 -1.48 16 24 C 0.05 0.63 7.16 -38.86 -0.28 0.35 16 25 C 0.03 0.35 7.14 -39.13 -0.28 0.07 16 26 C -0.04 -0.59 9.60 -39.06 -0.38 -0.97 16 27 O -0.30 -3.89 11.41 -45.81 -0.52 -4.41 16 28 C 0.21 1.84 8.88 101.05 0.90 2.74 16 29 O -0.31 -3.36 11.39 -45.23 -0.52 -3.87 16 30 H 0.27 8.19 8.31 -40.82 -0.34 7.85 16 31 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 32 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.37 8.03 -52.49 -0.42 0.95 16 36 H 0.37 4.55 6.70 -182.60 -1.22 3.32 16 37 H 0.14 1.07 6.40 -52.49 -0.34 0.73 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 2.59 7.64 -52.49 -0.40 2.19 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -39.70 363.26 -7.49 -47.19 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.90 Total: -0.70 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.90 Total: -5.80 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 1.22 Total: -41.48 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.96 Total: -26.66 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -4.43 Total: 21.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.70 -7.49 -47.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044393749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.853 kcal (2) G-P(sol) polarization free energy of solvation -39.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds