Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48504 * 109.46854 * 274.89963 * 3 2 1 5 5 H 1.48497 * 109.46837 * 34.89625 * 3 2 1 6 6 H 1.48499 * 109.47495 * 154.89790 * 3 2 1 7 7 C 1.38645 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99997 * 5.29889 * 7 2 1 9 9 O 1.34804 * 119.99986 * 185.29316 * 7 2 1 10 10 C 1.35607 * 116.99922 * 185.44117 * 9 7 2 11 11 C 1.38725 * 120.16029 * 92.87906 * 10 9 7 12 12 C 1.38115 * 120.08427 * 180.27565 * 11 10 9 13 13 C 1.38520 * 120.40843 * 359.69579 * 12 11 10 14 14 C 1.37889 * 120.31916 * 0.02562 * 13 12 11 15 15 C 1.39691 * 119.90435 * 0.02562 * 14 13 12 16 16 C 1.47292 * 120.20041 * 179.97438 * 15 14 13 17 17 N 1.29863 * 120.00147 * 176.25631 * 16 15 14 18 18 N 1.40096 * 120.00108 * 185.27891 * 17 16 15 19 19 C 1.34775 * 120.00233 * 183.83391 * 18 17 16 20 20 O 1.21633 * 120.00199 * 354.85365 * 19 18 17 21 21 C 1.47558 * 120.00296 * 174.84931 * 19 18 17 22 22 C 1.39727 * 120.08315 * 0.02562 * 21 19 18 23 23 C 1.37766 * 120.00221 * 179.71151 * 22 21 19 24 24 C 1.38865 * 120.22170 * 0.52865 * 23 22 21 25 25 C 1.39556 * 120.05702 * 359.47467 * 24 23 22 26 26 C 1.38123 * 119.98298 * 0.26219 * 25 24 23 27 27 O 1.36538 * 108.59282 * 180.24428 * 25 24 23 28 28 C 1.43971 * 105.45095 * 342.68757 * 27 25 24 29 29 O 1.36360 * 131.35406 * 179.78815 * 24 23 22 30 30 H 0.96999 * 119.99824 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.95400 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.79482 * 179.72633 * 12 11 10 33 33 H 1.07999 * 119.84478 * 180.02562 * 13 12 11 34 34 H 1.07995 * 120.04905 * 179.97438 * 14 13 12 35 35 H 1.07995 * 119.99617 * 356.25886 * 16 15 14 36 36 H 0.97002 * 120.00376 * 3.83597 * 18 17 16 37 37 H 1.07997 * 120.00069 * 359.97438 * 22 21 19 38 38 H 1.07999 * 119.89305 * 180.30113 * 23 22 21 39 39 H 1.07995 * 120.04631 * 180.02562 * 26 25 24 40 40 H 1.09001 * 110.56668 * 268.61955 * 28 27 25 41 41 H 1.08997 * 110.56944 * 145.76242 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.3936 2.1062 -1.3950 5 1 1.5027 2.6205 0.8010 6 1 3.5952 1.4125 0.5939 7 6 2.0088 -1.2007 0.0005 8 1 1.4723 -2.1340 -0.0854 9 8 3.3526 -1.2032 0.1082 10 6 3.9776 -2.4006 -0.0116 11 6 4.4471 -2.8212 -1.2474 12 6 5.0784 -4.0436 -1.3687 13 6 5.2535 -4.8554 -0.2601 14 6 4.7984 -4.4514 0.9773 15 6 4.1572 -3.2181 1.1149 16 6 3.6680 -2.7804 2.4335 17 7 3.1378 -1.6029 2.5713 18 7 2.7739 -1.1431 3.8436 19 6 2.1535 0.0457 3.9786 20 8 1.9931 0.7617 3.0084 21 6 1.6686 0.4788 5.3032 22 6 1.8522 -0.3420 6.4190 23 6 1.4041 0.0666 7.6560 24 6 0.7595 1.2884 7.7973 25 6 0.5730 2.1129 6.6869 26 6 1.0249 1.7110 5.4451 27 8 -0.0742 3.2457 7.0896 28 6 -0.6439 2.9264 8.3727 29 8 0.2295 1.9062 8.8913 30 1 -0.4850 0.8400 0.0004 31 1 4.3145 -2.1940 -2.1166 32 1 5.4382 -4.3683 -2.3338 33 1 5.7488 -5.8093 -0.3653 34 1 4.9369 -5.0880 1.8387 35 1 3.7503 -3.4386 3.2857 36 1 2.9685 -1.6803 4.6275 37 1 2.3491 -1.2949 6.3124 38 1 1.5512 -0.5671 8.5180 39 1 0.8814 2.3484 4.5852 40 1 -1.6567 2.5406 8.2566 41 1 -0.6387 3.8015 9.0224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044393749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = -21.466819 kcal Electronic energy + Delta-G solvation = -30267.307598 eV Core-core repulsion = 25887.686486 eV Total energy + Delta-G solvation = -4379.621113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31560 -40.98480 -40.56421 -38.47093 -37.93597 -37.47529 -37.31187 -34.07235 -33.90660 -31.97551 -31.74935 -30.94558 -30.10194 -27.04528 -26.72644 -25.45937 -24.36442 -23.92472 -23.11631 -22.02429 -21.52661 -19.87581 -19.61768 -19.09684 -18.65885 -18.45378 -18.16559 -17.49737 -17.03658 -16.60507 -16.27338 -16.12850 -15.97827 -15.62479 -15.51618 -15.15871 -15.04041 -14.87806 -14.85075 -14.27113 -14.16631 -14.06717 -14.03367 -13.94496 -13.61436 -13.37398 -12.85501 -12.63387 -12.53814 -12.40960 -12.11796 -11.98448 -11.77252 -11.55010 -11.15091 -10.73811 -10.51694 -10.25073 -10.13582 -9.48137 -9.32450 -8.93436 -8.19723 -5.82929 -0.55316 -0.00254 0.04816 0.58643 1.27873 1.36979 1.38413 1.45783 1.60360 1.72866 1.96864 2.39046 2.54168 2.60666 2.98046 3.21354 3.25253 3.42308 3.71143 3.76123 3.80468 3.85288 3.86591 3.97748 4.03356 4.17105 4.29558 4.35998 4.39529 4.61153 4.70804 4.74430 4.82012 4.84931 4.96762 5.01288 5.05527 5.14260 5.21091 5.58030 5.64813 5.66924 5.77858 5.90656 6.08353 6.19134 6.35536 6.70316 7.26766 7.58600 8.09171 8.96094 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.002992 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.368749 B = 9355.197673 C =10923.514988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.033 3.967 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.303 1.303 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.042 0.958 9 O -0.277 6.277 10 C 0.116 3.884 11 C -0.178 4.178 12 C -0.088 4.088 13 C -0.138 4.138 14 C -0.067 4.067 15 C -0.110 4.110 16 C 0.095 3.905 17 N -0.225 5.225 18 N -0.572 5.572 19 C 0.562 3.438 20 O -0.532 6.532 21 C -0.127 4.127 22 C -0.054 4.054 23 C -0.092 4.092 24 C 0.060 3.940 25 C 0.010 3.990 26 C -0.064 4.064 27 O -0.328 6.328 28 C 0.203 3.797 29 O -0.308 6.308 30 H 0.263 0.737 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.398 0.602 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -8.614 19.738 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.161 4.161 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.230 1.230 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.060 0.940 9 O -0.190 6.190 10 C 0.070 3.930 11 C -0.196 4.196 12 C -0.107 4.107 13 C -0.155 4.155 14 C -0.087 4.087 15 C -0.113 4.113 16 C -0.115 4.115 17 N -0.029 5.029 18 N -0.316 5.316 19 C 0.351 3.649 20 O -0.406 6.406 21 C -0.132 4.132 22 C -0.072 4.072 23 C -0.110 4.110 24 C 0.015 3.985 25 C -0.034 4.034 26 C -0.084 4.084 27 O -0.245 6.245 28 C 0.093 3.907 29 O -0.223 6.223 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.240 0.760 37 H 0.198 0.802 38 H 0.204 0.796 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.504 -6.712 18.944 21.124 hybrid contribution -0.361 0.741 0.363 0.900 sum 6.144 -5.971 19.307 21.123 Atomic orbital electron populations 1.69734 1.06513 1.27108 1.56264 1.24415 0.94831 0.99788 0.97089 0.85134 0.79107 0.80734 0.74822 1.21915 1.22993 1.20674 1.19668 0.78054 0.92917 1.47092 0.94036 1.83457 1.19355 1.25201 1.90966 1.19710 0.93824 0.86201 0.93300 1.21663 1.03013 0.98656 0.96314 1.21465 0.96250 0.92099 1.00849 1.21448 1.01358 1.01233 0.91494 1.21481 0.94958 0.92446 0.99817 1.19279 1.04398 0.96609 0.91023 1.24750 0.95924 0.93037 0.97810 1.75982 1.08237 1.17331 1.01313 1.46656 1.59273 1.20471 1.05228 1.18390 0.77359 0.80428 0.88758 1.90781 1.54652 1.53642 1.41526 1.19307 1.04783 0.96365 0.92731 1.21427 0.96769 0.99638 0.89357 1.20393 0.99043 0.92163 0.99372 1.20349 0.99221 0.94993 0.83985 1.19542 1.01913 0.87429 0.94498 1.19922 0.97958 0.95939 0.94601 1.87392 1.68289 1.31656 1.37136 1.26242 0.92941 0.91846 0.79699 1.87317 1.59638 1.47768 1.27602 0.92761 0.87051 0.82953 0.81386 0.81172 0.81860 0.75967 0.80228 0.79566 0.86527 0.87582 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -65.01 13.96 21.61 0.30 -64.71 16 2 C 0.03 2.16 5.39 84.83 0.46 2.61 16 3 Si 0.97 59.08 26.05 68.60 1.79 60.87 16 4 H -0.29 -16.71 7.11 99.48 0.71 -16.01 16 5 H -0.30 -18.70 7.11 99.48 0.71 -18.00 16 6 H -0.28 -17.67 7.11 99.48 0.71 -16.96 16 7 C -0.30 -19.09 8.98 67.92 0.61 -18.48 16 8 H 0.04 2.84 7.99 -2.91 -0.02 2.81 16 9 O -0.28 -15.87 6.95 -20.91 -0.15 -16.01 16 10 C 0.12 5.30 5.61 22.90 0.13 5.43 16 11 C -0.18 -6.85 9.98 22.36 0.22 -6.62 16 12 C -0.09 -2.36 10.03 22.31 0.22 -2.13 16 13 C -0.14 -2.96 10.03 22.25 0.22 -2.73 16 14 C -0.07 -1.59 9.79 22.54 0.22 -1.37 16 15 C -0.11 -3.94 5.88 -20.03 -0.12 -4.06 16 16 C 0.09 3.22 10.73 87.37 0.94 4.16 16 17 N -0.22 -9.95 7.95 -52.26 -0.42 -10.36 16 18 N -0.57 -20.40 6.20 -175.76 -1.09 -21.49 16 19 C 0.56 23.47 7.88 86.70 0.68 24.16 16 20 O -0.53 -29.43 13.86 -4.13 -0.06 -29.48 16 21 C -0.13 -3.98 5.87 -20.09 -0.12 -4.09 16 22 C -0.05 -1.03 9.53 22.52 0.21 -0.81 16 23 C -0.09 -1.51 10.04 22.31 0.22 -1.28 16 24 C 0.06 1.33 7.16 22.74 0.16 1.49 16 25 C 0.01 0.30 7.14 22.56 0.16 0.46 16 26 C -0.06 -2.19 9.60 22.61 0.22 -1.97 16 27 O -0.33 -8.58 11.41 -76.50 -0.87 -9.45 16 28 C 0.20 3.17 8.88 113.37 1.01 4.18 16 29 O -0.31 -5.92 11.39 -74.42 -0.85 -6.77 16 30 H 0.26 17.38 8.31 -92.71 -0.77 16.61 16 31 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.16 3.38 8.03 -2.91 -0.02 3.36 16 36 H 0.40 8.92 6.70 -213.32 -1.43 7.49 16 37 H 0.18 1.90 6.40 -2.91 -0.02 1.88 16 38 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.12 4.68 7.64 -2.91 -0.02 4.65 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.17 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -100.67 363.26 3.79 -96.88 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -0.32 Total: 1.60 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.46 Total: -1.07 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -1.20 Total: -96.56 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -1.92 Total: -61.71 kcal Atomic # 14 Polarization: 59.08 SS G_CDS: 1.79 Total: 60.87 kcal Total: -100.67 3.79 -96.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044393749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.410 kcal (2) G-P(sol) polarization free energy of solvation -100.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds