Wall clock time and date at job start Tue Mar 31 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46889 * 240.00096 * 3 2 1 5 5 H 1.48501 * 109.46792 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47065 * 120.00086 * 3 2 1 7 7 C 1.37879 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00065 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.46503 * 120.00128 * 270.00470 * 10 9 7 12 12 C 1.50704 * 109.46704 * 270.00151 * 11 10 9 13 13 C 1.34513 * 125.79287 * 89.99829 * 12 11 10 14 14 C 1.41381 * 106.84113 * 179.97438 * 13 12 11 15 15 C 1.34520 * 106.84135 * 0.02562 * 14 13 12 16 16 O 1.34304 * 125.78503 * 269.69074 * 12 11 10 17 17 C 1.34778 * 119.99863 * 90.00099 * 10 9 7 18 18 O 1.21280 * 119.99812 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00063 * 180.02562 * 17 10 9 20 20 N 1.46900 * 109.47298 * 173.84995 * 19 17 10 21 21 C 1.47154 * 110.99817 * 170.56127 * 20 19 17 22 22 C 1.52891 * 108.50761 * 52.15692 * 21 20 19 23 23 C 1.50721 * 109.95725 * 50.39183 * 22 21 20 24 24 C 1.38673 * 118.48922 * 163.47462 * 23 22 21 25 25 C 1.38039 * 120.35139 * 179.97438 * 24 23 22 26 26 C 1.38258 * 119.82136 * 359.54746 * 25 24 23 27 27 C 1.38015 * 119.87231 * 0.32568 * 26 25 24 28 28 C 1.37829 * 121.65708 * 343.09112 * 23 22 21 29 29 C 1.46629 * 110.99820 * 293.55556 * 20 19 17 30 30 H 0.97001 * 119.99592 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46242 * 60.00018 * 9 7 2 32 32 H 1.08998 * 109.47006 * 300.00249 * 9 7 2 33 33 H 1.08993 * 109.47167 * 29.99484 * 11 10 9 34 34 H 1.09001 * 109.47382 * 150.00288 * 11 10 9 35 35 H 1.08000 * 126.57549 * 0.04223 * 13 12 11 36 36 H 1.08000 * 126.57997 * 179.97438 * 14 13 12 37 37 H 1.08000 * 125.78681 * 180.02562 * 15 14 13 38 38 H 1.09001 * 109.47151 * 53.84944 * 19 17 10 39 39 H 1.09008 * 109.46757 * 293.85178 * 19 17 10 40 40 H 1.09000 * 109.63187 * 171.86057 * 21 20 19 41 41 H 1.09001 * 109.63698 * 292.44776 * 21 20 19 42 42 H 1.09004 * 109.39228 * 170.53707 * 22 21 20 43 43 H 1.09003 * 109.39094 * 290.33856 * 22 21 20 44 44 H 1.08003 * 119.82844 * 359.75271 * 24 23 22 45 45 H 1.07998 * 120.09046 * 179.82804 * 25 24 23 46 46 H 1.08003 * 120.06109 * 180.35039 * 26 25 24 47 47 H 1.08000 * 119.81093 * 179.97438 * 27 26 25 48 48 H 1.09004 * 109.29787 * 168.78895 * 29 20 19 49 49 H 1.08998 * 109.13708 * 49.30914 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6790 -4.1695 -1.2693 12 6 1.7622 -5.2836 -1.7044 13 6 0.6697 -5.1470 -2.4770 14 6 0.1149 -6.4379 -2.6340 15 6 0.9013 -7.2862 -1.9473 16 8 1.9008 -6.5823 -1.3911 17 6 2.6408 -4.1249 1.1667 18 8 2.2471 -3.6637 2.2170 19 6 3.6205 -5.2700 1.1667 20 7 4.0514 -5.5459 2.5438 21 6 4.8297 -6.7927 2.6130 22 6 5.9509 -6.7232 1.5759 23 6 6.7052 -5.4263 1.7199 24 6 7.9523 -5.3167 1.1235 25 6 8.6763 -4.1462 1.2306 26 6 8.1510 -3.0743 1.9282 27 6 6.9087 -3.1814 2.5199 28 6 6.1820 -4.3587 2.4172 29 6 4.8330 -4.4288 3.0835 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5566 -0.8904 32 1 0.6247 -2.5571 0.8896 33 1 2.6868 -3.3879 -2.0289 34 1 3.6885 -4.5596 -1.1389 35 1 0.2898 -4.2277 -2.8977 36 1 -0.7708 -6.6938 -3.1965 37 1 0.7566 -8.3530 -1.8623 38 1 4.4874 -5.0066 0.5607 39 1 3.1426 -6.1571 0.7509 40 1 5.2587 -6.9019 3.6091 41 1 4.1817 -7.6417 2.3954 42 1 6.6352 -7.5583 1.7260 43 1 5.5225 -6.7819 0.5753 44 1 8.3611 -6.1527 0.5754 45 1 9.6484 -4.0664 0.7669 46 1 8.7117 -2.1548 2.0096 47 1 6.4996 -2.3436 3.0649 48 1 4.9677 -4.5685 4.1561 49 1 4.2949 -3.4976 2.9063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044871068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:23 Heat of formation + Delta-G solvation = 23.340969 kcal Electronic energy + Delta-G solvation = -32398.962411 eV Core-core repulsion = 28292.950499 eV Total energy + Delta-G solvation = -4106.011912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32772 -40.59505 -38.84745 -36.92792 -35.13524 -32.84850 -32.69806 -32.64958 -31.28011 -30.13712 -29.31909 -28.47460 -26.75255 -25.35204 -24.22308 -23.21563 -22.26401 -22.15672 -21.48763 -20.51402 -19.62353 -18.30758 -17.31085 -16.92402 -16.40464 -16.23188 -15.94520 -15.78426 -15.47301 -14.98691 -14.87553 -14.51184 -14.46488 -14.15122 -14.05556 -13.62672 -13.35815 -13.07582 -12.83734 -12.62522 -12.54602 -12.44052 -12.39677 -12.21735 -12.06620 -11.57523 -11.55678 -11.48202 -11.43984 -11.21794 -11.06168 -10.87994 -10.66810 -10.58460 -10.18252 -9.73242 -9.66123 -8.93255 -8.75885 -8.55090 -8.44376 -8.30293 -8.14942 -7.77311 -6.05020 -4.10018 1.33850 1.37560 1.90008 2.82716 3.13179 3.30870 3.35740 3.37387 3.49246 3.71392 3.74573 4.25731 4.44573 4.62374 4.79642 4.86182 4.91442 4.97933 5.05899 5.07124 5.11342 5.21206 5.25507 5.29921 5.37994 5.44571 5.45249 5.55087 5.60316 5.68799 5.69641 5.82994 5.85396 5.89428 6.00448 6.01020 6.04164 6.17729 6.18614 6.29747 6.43005 6.51354 6.60764 6.71685 6.92396 7.01141 7.13880 7.15495 7.32050 7.45467 7.51670 7.91127 8.21598 8.34256 8.89315 9.08670 9.55120 11.03033 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.006855 B = 0.004821 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4083.801682 B = 5806.723917 C = 8593.683118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.249 3.751 10 N -0.595 5.595 11 C 0.191 3.809 12 C -0.026 4.026 13 C -0.193 4.193 14 C -0.213 4.213 15 C -0.050 4.050 16 O -0.178 6.178 17 C 0.511 3.489 18 O -0.516 6.516 19 C 0.030 3.970 20 N -0.505 5.505 21 C 0.053 3.947 22 C -0.119 4.119 23 C -0.084 4.084 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.106 4.106 29 C 0.084 3.916 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.198 0.802 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 -15.548 -1.976 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.130 3.870 10 N -0.328 5.328 11 C 0.066 3.934 12 C -0.077 4.077 13 C -0.213 4.213 14 C -0.232 4.232 15 C -0.118 4.118 16 O -0.074 6.074 17 C 0.297 3.703 18 O -0.391 6.391 19 C -0.101 4.101 20 N -0.226 5.226 21 C -0.075 4.075 22 C -0.158 4.158 23 C -0.084 4.084 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.128 4.128 28 C -0.107 4.107 29 C -0.044 4.044 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.214 0.786 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.107 0.893 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.634 -15.319 -0.905 19.257 hybrid contribution 0.973 1.051 -0.926 1.705 sum 12.606 -14.268 -1.831 19.127 Atomic orbital electron populations 1.69927 1.05966 1.27106 1.50165 1.24911 0.94835 0.99095 0.95047 0.86594 0.79555 0.82868 0.78619 1.20266 1.21185 1.20186 1.21374 0.93268 0.90571 1.51394 0.92496 1.19296 0.87354 0.81759 0.98618 1.48311 1.46476 1.34771 1.03203 1.19868 0.93848 0.90596 0.89078 1.23305 1.00802 0.82705 1.00908 1.21699 0.97053 0.98891 1.03677 1.21824 1.02795 0.93246 1.05320 1.23923 0.89905 0.97795 1.00196 1.83984 1.44511 1.18707 1.60229 1.20205 0.82361 0.83538 0.84151 1.90659 1.57278 1.60698 1.30508 1.22165 0.98156 0.99071 0.90675 1.62280 1.38424 1.02597 1.19269 1.22274 0.93249 0.92970 0.99007 1.21160 0.98395 0.94909 1.01304 1.19533 0.95029 0.95253 0.98564 1.21029 0.94549 0.98041 1.00182 1.21040 0.99825 0.93616 0.99841 1.21093 0.95979 0.98623 0.98213 1.21163 0.94663 0.97312 0.99661 1.20560 0.98042 0.93545 0.98575 1.21334 0.87779 0.96675 0.98612 0.92656 0.94931 0.93740 0.86669 0.90150 0.83250 0.83784 0.78567 0.92048 0.88155 0.90187 0.89937 0.90296 0.90320 0.86434 0.86353 0.86192 0.85817 0.89324 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 10 N -0.59 -12.49 2.44 -176.43 -0.43 -12.92 16 11 C 0.19 3.16 5.77 -5.19 -0.03 3.13 16 12 C -0.03 -0.41 6.90 -35.62 -0.25 -0.65 16 13 C -0.19 -3.01 10.81 -39.70 -0.43 -3.43 16 14 C -0.21 -2.81 10.91 -39.70 -0.43 -3.25 16 15 C -0.05 -0.61 12.09 29.42 0.36 -0.26 16 16 O -0.18 -2.58 9.79 5.70 0.06 -2.53 16 17 C 0.51 10.74 7.14 -10.98 -0.08 10.66 16 18 O -0.52 -12.93 14.34 5.56 0.08 -12.86 16 19 C 0.03 0.49 3.16 -4.97 -0.02 0.47 16 20 N -0.51 -7.72 4.71 -237.64 -1.12 -8.84 16 21 C 0.05 0.61 6.03 -3.74 -0.02 0.59 16 22 C -0.12 -1.25 5.17 -27.93 -0.14 -1.39 16 23 C -0.08 -1.04 5.05 -104.60 -0.53 -1.57 16 24 C -0.12 -1.36 9.66 -39.49 -0.38 -1.74 16 25 C -0.13 -1.40 10.05 -39.65 -0.40 -1.80 16 26 C -0.12 -1.47 10.05 -39.66 -0.40 -1.87 16 27 C -0.11 -1.51 9.65 -39.48 -0.38 -1.89 16 28 C -0.11 -1.49 5.20 -104.63 -0.54 -2.04 16 29 C 0.08 1.31 5.20 -5.16 -0.03 1.28 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.12 1.86 8.07 -51.93 -0.42 1.44 16 34 H 0.08 1.14 6.27 -51.93 -0.33 0.82 16 35 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 39 H 0.10 1.51 7.20 -51.92 -0.37 1.13 16 40 H 0.08 0.85 8.05 -51.93 -0.42 0.44 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.82 7.04 -51.93 -0.37 0.45 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 47 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.11 2.04 5.99 -51.93 -0.31 1.73 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -33.37 398.14 -10.89 -44.26 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.04 Total: 6.41 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -4.15 Total: -10.60 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.81 Total: -47.24 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.14 Total: -15.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.37 -10.89 -44.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044871068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.597 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds