Wall clock time and date at job start Tue Mar 31 2020 05:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86803 * 119.99684 * 2 1 4 4 H 1.48493 * 109.47429 * 270.00050 * 3 2 1 5 5 H 1.48507 * 109.47046 * 30.00410 * 3 2 1 6 6 H 1.48506 * 109.46747 * 150.00028 * 3 2 1 7 7 C 1.40271 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99732 * 170.69959 * 7 2 1 9 9 C 1.40887 * 119.99929 * 350.69121 * 7 2 1 10 10 C 1.40700 * 120.33128 * 326.06985 * 9 7 2 11 11 C 1.37598 * 119.88391 * 180.25476 * 10 9 7 12 12 C 1.38835 * 120.56948 * 359.74394 * 11 10 9 13 13 C 1.38221 * 120.67300 * 359.97438 * 12 11 10 14 14 C 1.39222 * 120.09277 * 0.02562 * 13 12 11 15 15 C 1.47440 * 120.28258 * 179.97438 * 14 13 12 16 16 O 1.21609 * 119.99816 * 174.15249 * 15 14 13 17 17 N 1.34777 * 119.99910 * 354.15281 * 15 14 13 18 18 N 1.40098 * 120.00045 * 179.72153 * 17 15 14 19 19 C 1.34778 * 119.99992 * 180.27247 * 18 17 15 20 20 O 1.21577 * 119.99945 * 0.02562 * 19 18 17 21 21 C 1.47606 * 119.99754 * 179.97438 * 19 18 17 22 22 C 1.39704 * 120.08334 * 0.02562 * 21 19 18 23 23 C 1.37772 * 120.00168 * 179.97438 * 22 21 19 24 24 C 1.38852 * 120.22174 * 359.97438 * 23 22 21 25 25 C 1.39550 * 120.05485 * 0.02562 * 24 23 22 26 26 C 1.38130 * 119.97778 * 359.71115 * 25 24 23 27 27 O 1.36540 * 108.59062 * 180.02562 * 25 24 23 28 28 C 1.43978 * 105.45235 * 342.68978 * 27 25 24 29 29 O 1.36364 * 131.35427 * 180.02562 * 24 23 22 30 30 H 0.97003 * 120.00783 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.06146 * 359.97438 * 10 9 7 32 32 H 1.07995 * 119.72028 * 179.76695 * 11 10 9 33 33 H 1.08000 * 119.66586 * 180.02562 * 12 11 10 34 34 H 1.07998 * 119.95293 * 180.02562 * 13 12 11 35 35 H 0.97004 * 119.99653 * 0.02562 * 17 15 14 36 36 H 0.97004 * 119.99676 * 0.28037 * 18 17 15 37 37 H 1.07999 * 120.00070 * 0.02562 * 22 21 19 38 38 H 1.08004 * 119.88743 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.04402 * 180.28318 * 26 25 24 40 40 H 1.08993 * 110.57046 * 268.61970 * 28 27 25 41 41 H 1.08996 * 110.56088 * 145.76189 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0466 -1.4000 5 1 1.4376 2.6527 0.7002 6 1 3.5378 1.4402 0.7001 7 6 2.0076 -1.2148 -0.0005 8 1 3.0770 -1.2208 -0.1517 9 6 1.3171 -2.4269 0.1963 10 6 0.1970 -2.4767 1.0462 11 6 -0.4674 -3.6666 1.2359 12 6 -0.0456 -4.8214 0.5910 13 6 1.0484 -4.7979 -0.2536 14 6 1.7411 -3.6090 -0.4656 15 6 2.9089 -3.5792 -1.3651 16 8 3.4453 -2.5205 -1.6303 17 7 3.3820 -4.7254 -1.8934 18 7 4.4881 -4.6965 -2.7527 19 6 4.9578 -5.8420 -3.2853 20 8 4.4213 -6.9003 -3.0204 21 6 6.1228 -5.8114 -4.1912 22 6 6.7402 -4.5962 -4.4972 23 6 7.8278 -4.5696 -5.3425 24 6 8.3145 -5.7481 -5.8925 25 6 7.7022 -6.9652 -5.5907 26 6 6.6148 -6.9985 -4.7396 27 8 8.3641 -7.9608 -6.2503 28 6 9.1272 -7.2996 -7.2766 29 8 9.3567 -5.9839 -6.7396 30 1 -0.4851 0.8400 0.0004 31 1 -0.1381 -1.5835 1.5524 32 1 -1.3246 -3.7026 1.8918 33 1 -0.5781 -5.7474 0.7501 34 1 1.3662 -5.7030 -0.7496 35 1 2.9539 -5.5698 -1.6820 36 1 4.9159 -3.8520 -2.9643 37 1 6.3654 -3.6775 -4.0705 38 1 8.3035 -3.6290 -5.5782 39 1 6.1430 -7.9405 -4.5017 40 1 8.5541 -7.2402 -8.2018 41 1 10.0727 -7.8157 -7.4432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044980589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:18 Heat of formation + Delta-G solvation = -40.017823 kcal Electronic energy + Delta-G solvation = -29370.957924 eV Core-core repulsion = 24990.532379 eV Total energy + Delta-G solvation = -4380.425545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.109 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.59189 -40.25589 -38.88851 -37.59777 -36.86458 -36.71969 -34.90419 -33.79867 -31.89441 -31.10117 -30.37527 -29.88078 -28.87729 -26.34797 -25.51390 -24.25461 -23.30907 -22.47925 -21.43943 -20.99307 -20.11449 -18.64291 -18.36123 -17.83998 -17.62364 -17.31168 -16.75578 -16.30289 -15.57787 -15.32314 -15.24471 -14.88254 -14.84827 -14.30281 -14.27025 -14.12944 -13.87500 -13.84017 -13.44149 -13.31594 -13.17774 -13.11591 -12.80019 -12.38409 -11.75535 -11.59311 -11.37055 -11.22504 -11.17287 -10.81505 -10.76492 -10.63909 -10.26727 -10.21682 -9.77655 -9.35298 -9.33818 -8.72494 -8.57537 -7.98506 -7.65445 -7.46193 -6.89567 -4.49585 0.31637 0.80294 2.04904 2.18618 2.30134 2.59831 2.74438 3.00703 3.04544 3.10798 3.17159 3.40762 3.89438 3.98001 4.00250 4.14567 4.22894 4.46739 4.57778 4.59259 4.63467 4.71877 4.89765 5.09239 5.51442 5.53145 5.63625 5.70852 5.77790 5.86198 5.90087 5.94051 6.22654 6.46060 6.64714 6.84770 6.98790 7.01635 7.07241 7.12642 7.36413 7.52489 7.78126 7.87125 8.06496 8.14051 8.14462 8.54511 8.70308 8.77636 9.15368 10.05170 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.002255 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.252081 B =12416.020417 C =14175.607993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.106 0.894 9 C 0.149 3.851 10 C -0.145 4.145 11 C -0.093 4.093 12 C -0.240 4.240 13 C -0.056 4.056 14 C -0.258 4.258 15 C 0.569 3.431 16 O -0.538 6.538 17 N -0.540 5.540 18 N -0.507 5.507 19 C 0.557 3.443 20 O -0.542 6.542 21 C -0.112 4.112 22 C -0.071 4.071 23 C -0.105 4.105 24 C 0.058 3.942 25 C 0.022 3.978 26 C -0.038 4.038 27 O -0.305 6.305 28 C 0.212 3.788 29 O -0.306 6.306 30 H 0.284 0.716 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.425 0.575 36 H 0.428 0.572 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.087 0.913 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.399 -8.192 -10.985 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.150 4.150 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.442 4.442 8 H 0.123 0.877 9 C 0.144 3.856 10 C -0.164 4.164 11 C -0.112 4.112 12 C -0.260 4.260 13 C -0.075 4.075 14 C -0.264 4.264 15 C 0.364 3.636 16 O -0.415 6.415 17 N -0.293 5.293 18 N -0.252 5.252 19 C 0.343 3.657 20 O -0.419 6.419 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.123 4.123 24 C 0.012 3.988 25 C -0.022 4.022 26 C -0.058 4.058 27 O -0.221 6.221 28 C 0.101 3.899 29 O -0.221 6.221 30 H 0.095 0.905 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.268 0.732 36 H 0.271 0.729 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.104 0.896 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.392 -8.086 -11.020 19.136 hybrid contribution 0.344 0.540 -0.387 0.748 sum 13.735 -7.546 -11.407 19.384 Atomic orbital electron populations 1.69705 1.07799 1.29828 1.33923 1.26144 0.94827 1.01888 0.92131 0.86124 0.80440 0.79658 0.79457 1.19255 1.20236 1.18248 1.20172 0.97364 0.89461 1.37173 0.87663 1.17422 0.90042 0.91044 0.87068 1.21355 0.98262 0.96459 1.00304 1.20842 0.98220 0.93480 0.98662 1.20315 1.01649 0.97504 1.06519 1.20694 0.95153 0.95034 0.96582 1.19093 1.01959 0.96646 1.08748 1.18737 0.83985 0.81244 0.79626 1.90687 1.60036 1.29080 1.61680 1.45423 1.25322 1.12401 1.46182 1.44524 1.26092 1.10602 1.44022 1.17877 0.83765 0.83153 0.80878 1.90803 1.59731 1.29601 1.61813 1.19308 0.97787 0.93420 1.01203 1.21191 0.94337 0.97624 0.95890 1.19997 0.97224 0.95758 0.99340 1.20101 0.88270 0.94983 0.95402 1.19545 0.96460 0.85738 1.00452 1.19974 0.91839 0.99506 0.94450 1.87413 1.58871 1.29674 1.46166 1.25690 0.97232 0.76720 0.90290 1.87347 1.41900 1.34930 1.57966 0.90516 0.86257 0.88844 0.88784 0.88994 0.73190 0.72870 0.83570 0.83675 0.83056 0.89551 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.57 11.13 55.56 0.62 -18.95 16 2 C 0.07 1.70 5.25 -17.30 -0.09 1.60 16 3 Si 0.92 18.69 29.57 -169.99 -5.03 13.66 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.41 -10.79 7.67 -37.82 -0.29 -11.08 16 8 H 0.11 2.81 5.93 -52.49 -0.31 2.50 16 9 C 0.15 3.81 5.51 -106.54 -0.59 3.23 16 10 C -0.14 -3.52 8.62 -38.89 -0.34 -3.85 16 11 C -0.09 -2.02 10.01 -39.59 -0.40 -2.42 16 12 C -0.24 -4.97 10.03 -39.37 -0.39 -5.36 16 13 C -0.06 -1.16 9.52 -39.22 -0.37 -1.54 16 14 C -0.26 -6.05 5.92 -104.36 -0.62 -6.67 16 15 C 0.57 12.52 7.83 -12.51 -0.10 12.42 16 16 O -0.54 -12.93 13.44 5.27 0.07 -12.86 16 17 N -0.54 -9.89 6.21 30.44 0.19 -9.70 16 18 N -0.51 -7.86 6.21 30.47 0.19 -7.67 16 19 C 0.56 8.18 7.88 -12.44 -0.10 8.08 16 20 O -0.54 -9.43 16.18 5.30 0.09 -9.34 16 21 C -0.11 -1.31 5.87 -104.98 -0.62 -1.93 16 22 C -0.07 -0.67 9.53 -39.20 -0.37 -1.05 16 23 C -0.10 -0.92 10.04 -39.52 -0.40 -1.32 16 24 C 0.06 0.58 7.16 -38.87 -0.28 0.30 16 25 C 0.02 0.24 7.14 -39.13 -0.28 -0.04 16 26 C -0.04 -0.43 9.60 -39.07 -0.38 -0.81 16 27 O -0.30 -3.03 11.41 -45.82 -0.52 -3.55 16 28 C 0.21 1.38 8.88 101.05 0.90 2.28 16 29 O -0.31 -2.82 11.39 -45.24 -0.52 -3.33 16 30 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 31 H 0.12 2.96 6.58 -52.49 -0.35 2.61 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.64 6.44 -52.49 -0.34 1.30 16 35 H 0.43 7.41 6.06 -182.60 -1.11 6.31 16 36 H 0.43 5.96 6.02 -182.60 -1.10 4.86 16 37 H 0.15 1.13 6.39 -52.49 -0.34 0.80 16 38 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.15 1.73 7.64 -52.49 -0.40 1.33 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -31.11 357.14 -9.42 -40.53 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.19 Total: 13.97 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -4.70 Total: -8.14 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 1.00 Total: -36.32 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.88 Total: -29.08 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.11 -9.42 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044980589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.509 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds