Wall clock time and date at job start Tue Mar 31 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46987 * 120.00933 * 3 2 1 7 7 C 1.38802 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.38954 * 119.99529 * 179.72573 * 13 11 10 15 15 N 1.30295 * 126.08900 * 359.69128 * 14 13 11 16 16 N 1.26104 * 117.71355 * 179.79984 * 15 14 13 17 17 C 1.30350 * 117.68828 * 0.50659 * 16 15 14 18 18 C 1.47817 * 126.08715 * 179.75046 * 17 16 15 19 19 C 1.39573 * 120.14725 * 179.69511 * 18 17 16 20 20 C 1.37948 * 119.86233 * 179.74654 * 19 18 17 21 21 C 1.38384 * 120.17221 * 0.53684 * 20 19 18 22 22 C 1.38308 * 120.30511 * 359.74256 * 21 20 19 23 23 C 1.38111 * 120.13115 * 359.97435 * 22 21 20 24 24 Cl 1.73590 * 120.08753 * 180.02562 * 23 22 21 25 25 S 1.76470 * 107.82078 * 359.73114 * 17 16 15 26 26 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46810 * 59.99567 * 10 9 7 28 28 H 1.08998 * 109.46824 * 300.00077 * 10 9 7 29 29 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 30 30 H 1.07994 * 120.06638 * 0.02562 * 19 18 17 31 31 H 1.08003 * 119.91321 * 180.25328 * 20 19 18 32 32 H 1.08002 * 119.84383 * 179.76163 * 21 20 19 33 33 H 1.07998 * 119.93228 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3569 -7.6444 0.0091 15 7 1.1017 -7.9938 0.0166 16 7 0.8362 -9.2266 0.0175 17 6 1.8370 -10.0618 0.0210 18 6 1.7401 -11.5367 0.0278 19 6 2.8985 -12.3153 0.0246 20 6 2.8013 -13.6913 0.0362 21 6 1.5589 -14.3008 0.0399 22 6 0.4064 -13.5361 0.0373 23 6 0.4891 -12.1575 0.0316 24 17 -0.9581 -11.1989 0.0290 25 16 3.3280 -9.1179 0.0156 26 1 -0.4851 0.8400 0.0004 27 1 3.1252 -3.7317 0.8875 28 1 3.1238 -3.7309 -0.8925 29 1 3.8010 -6.1834 0.0019 30 1 3.8689 -11.8414 0.0175 31 1 3.6971 -14.2945 0.0379 32 1 1.4890 -15.3785 0.0452 33 1 -0.5601 -14.0181 0.0407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048945357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:30 Heat of formation + Delta-G solvation = 64.667685 kcal Electronic energy + Delta-G solvation = -22003.625039 eV Core-core repulsion = 18309.552886 eV Total energy + Delta-G solvation = -3694.072153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 354.996 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23007 -39.79821 -39.29075 -36.55409 -35.22395 -32.98358 -32.49882 -31.30441 -30.33311 -28.83838 -26.17039 -25.52441 -23.58880 -23.17713 -21.98056 -19.88840 -19.35817 -17.93611 -17.88944 -17.06674 -16.49204 -16.17741 -15.91609 -15.39389 -15.00478 -14.86523 -14.54031 -14.31904 -14.06960 -13.89203 -13.61055 -13.52219 -12.69708 -12.55050 -12.32768 -11.92061 -11.74960 -11.44737 -11.35771 -11.13050 -11.08357 -10.85728 -10.52991 -10.27142 -10.10828 -9.93255 -9.62730 -9.48153 -9.21028 -9.12433 -8.45069 -8.36826 -6.60932 -6.28187 -4.01159 -0.21842 0.27224 0.70695 0.92531 1.01794 1.94471 2.44753 2.53107 2.91942 3.16011 3.19617 3.22059 3.25176 3.37169 3.72046 4.11631 4.24857 4.38561 4.44006 4.70351 4.75596 4.95351 5.01868 5.07059 5.13745 5.30628 5.47389 5.65196 5.68895 5.72442 5.85411 5.88810 5.96197 6.20017 6.90687 7.52433 8.08418 8.27697 8.59636 9.16667 10.79053 Molecular weight = 355.00amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.001946 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.920702 B =14383.989085 C =15274.730889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.074 0.926 9 S -0.050 6.050 10 C -0.150 4.150 11 C 0.521 3.479 12 O -0.437 6.437 13 N -0.627 5.627 14 C 0.276 3.724 15 N -0.261 5.261 16 N -0.196 5.196 17 C 0.029 3.971 18 C -0.006 4.006 19 C -0.089 4.089 20 C -0.114 4.114 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.005 4.005 24 Cl -0.023 7.023 25 S 0.066 5.934 26 H 0.270 0.730 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.425 0.575 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 -29.747 0.058 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.688 4.688 8 H 0.093 0.907 9 S 0.176 5.824 10 C -0.300 4.300 11 C 0.305 3.695 12 O -0.301 6.301 13 N -0.281 5.281 14 C -0.094 4.094 15 N -0.106 5.106 16 N -0.033 5.033 17 C -0.250 4.250 18 C -0.011 4.011 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.036 4.036 24 Cl 0.007 6.993 25 S 0.306 5.694 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.263 0.737 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.985 -29.524 0.062 30.585 hybrid contribution 2.484 1.504 -0.006 2.904 sum 10.469 -28.021 0.056 29.913 Atomic orbital electron populations 1.70000 1.05977 1.27785 1.46278 1.25006 0.95054 0.99106 0.94360 0.86192 0.79220 0.81081 0.78823 1.19882 1.20755 1.19886 1.22800 0.94910 0.91386 1.59686 0.90746 1.85571 1.03775 0.96270 1.96784 1.23558 1.07484 0.93253 1.05752 1.20961 0.86772 0.85793 0.75969 1.90878 1.14387 1.84048 1.40784 1.43487 1.11794 1.00248 1.72553 1.27232 0.91398 0.91175 0.99564 1.71817 1.12049 1.06933 1.19830 1.71787 1.26207 0.94790 1.10558 1.27261 0.89456 0.98298 1.09950 1.17485 0.92886 0.86660 1.04068 1.21182 0.96648 0.94068 0.99051 1.21130 0.98340 0.93945 0.99838 1.21298 0.91718 1.00464 0.97933 1.21103 1.00196 0.91032 1.00687 1.21104 0.88313 0.92276 1.01858 1.98460 1.34200 1.70722 1.95960 1.85442 1.10496 0.99631 1.73840 0.91966 0.88318 0.88319 0.73704 0.84913 0.84626 0.84591 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.05 -1.32 20.57 -107.50 -2.21 -3.53 16 10 C -0.15 -2.79 6.16 36.01 0.22 -2.57 16 11 C 0.52 9.49 7.81 -10.98 -0.09 9.41 16 12 O -0.44 -10.08 14.57 5.55 0.08 -10.00 16 13 N -0.63 -8.42 5.40 -11.61 -0.06 -8.48 16 14 C 0.28 4.02 8.41 -86.85 -0.73 3.29 16 15 N -0.26 -4.77 9.79 31.05 0.30 -4.46 16 16 N -0.20 -3.22 8.90 33.01 0.29 -2.92 16 17 C 0.03 0.37 7.39 -14.26 -0.11 0.26 16 18 C -0.01 -0.06 5.87 -104.95 -0.62 -0.68 16 19 C -0.09 -0.64 9.62 -39.19 -0.38 -1.02 16 20 C -0.11 -0.60 10.03 -39.63 -0.40 -1.00 16 21 C -0.09 -0.50 10.04 -39.50 -0.40 -0.89 16 22 C -0.11 -0.80 9.82 -39.60 -0.39 -1.19 16 23 C 0.00 -0.05 6.35 -39.10 -0.25 -0.30 16 24 Cl -0.02 -0.29 26.19 -51.86 -1.36 -1.65 16 25 S 0.07 0.67 22.56 -107.50 -2.43 -1.76 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 28 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.42 3.66 8.82 -40.82 -0.36 3.30 16 30 H 0.13 0.73 7.36 -52.49 -0.39 0.34 16 31 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 32 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -36.54 341.32 -9.86 -46.39 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -2.40 Total: -2.38 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.93 Total: -7.28 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 1.27 Total: -40.87 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -4.64 Total: -5.29 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.36 Total: -1.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.54 -9.86 -46.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048945357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.061 kcal (2) G-P(sol) polarization free energy of solvation -36.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds