Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00162 * 2 1 4 4 C 1.52994 * 109.47308 * 66.04386 * 3 2 1 5 5 C 1.53002 * 109.47609 * 180.02562 * 4 3 2 6 6 O 1.42893 * 109.47763 * 180.02562 * 5 4 3 7 7 C 1.35916 * 117.00323 * 179.97438 * 6 5 4 8 8 C 1.38728 * 120.04362 * 0.27384 * 7 6 5 9 9 C 1.38137 * 119.95782 * 180.23553 * 8 7 6 10 10 C 1.38365 * 120.04335 * 359.48598 * 9 8 7 11 11 Cl 1.73604 * 119.96019 * 180.27880 * 10 9 8 12 12 C 1.38371 * 120.08418 * 0.25849 * 10 9 8 13 13 C 1.38143 * 120.04298 * 0.02562 * 12 10 9 14 14 C 1.46899 * 111.00063 * 236.04703 * 2 1 3 15 15 C 1.50706 * 109.46923 * 293.95430 * 14 2 1 16 16 O 1.21282 * 119.99984 * 359.97438 * 15 14 2 17 17 N 1.34772 * 119.99944 * 180.02562 * 15 14 2 18 18 C 1.46500 * 120.00261 * 359.97438 * 17 15 14 19 19 C 1.46500 * 119.99966 * 179.97438 * 17 15 14 20 20 C 1.50706 * 109.46989 * 89.99596 * 19 17 15 21 21 H 1.07994 * 120.00043 * 0.02562 * 20 19 17 22 22 C 1.37885 * 119.99800 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99731 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99736 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47211 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47459 * 120.00077 * 24 22 20 27 27 H 1.48503 * 109.46884 * 240.00126 * 24 22 20 28 28 H 1.09002 * 109.47131 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47523 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47335 * 300.00272 * 1 2 3 31 31 H 1.09006 * 109.46897 * 306.04621 * 3 2 1 32 32 H 1.09000 * 109.47169 * 186.04881 * 3 2 1 33 33 H 1.09006 * 109.46950 * 60.00267 * 4 3 2 34 34 H 1.09000 * 109.47410 * 300.00347 * 4 3 2 35 35 H 1.08998 * 109.47155 * 59.99702 * 5 4 3 36 36 H 1.09008 * 109.46599 * 300.00148 * 5 4 3 37 37 H 1.07998 * 120.01718 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.98114 * 179.77139 * 9 8 7 39 39 H 1.08001 * 119.97793 * 180.02562 * 12 10 9 40 40 H 1.07998 * 120.01925 * 180.02562 * 13 12 10 41 41 H 1.08992 * 109.47121 * 53.94994 * 14 2 1 42 42 H 1.08994 * 109.47312 * 173.95644 * 14 2 1 43 43 H 1.08997 * 109.47122 * 90.00073 * 18 17 15 44 44 H 1.09000 * 109.47346 * 209.99964 * 18 17 15 45 45 H 1.09002 * 109.46769 * 330.00440 * 18 17 15 46 46 H 1.08999 * 109.47401 * 209.99822 * 19 17 15 47 47 H 1.08997 * 109.47020 * 330.00373 * 19 17 15 48 48 H 0.97005 * 119.99106 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1792 3.4861 1.3180 6 8 1.8398 4.1267 2.5493 7 6 2.2553 5.4105 2.7121 8 6 2.9699 6.0422 1.7048 9 6 3.3955 7.3454 1.8741 10 6 3.1003 8.0243 3.0431 11 17 3.6301 9.6645 3.2505 12 6 2.3831 7.3976 4.0468 13 6 1.9608 6.0925 3.8837 14 6 1.9954 -0.7659 -1.1376 15 6 1.6368 -2.2204 -0.9728 16 8 1.0054 -2.5832 -0.0030 17 7 2.0188 -3.1181 -1.9027 18 6 2.7820 -2.6800 -3.0739 19 6 1.6707 -4.5321 -1.7422 20 6 0.3391 -4.7989 -2.3956 21 1 -0.1943 -3.9957 -2.8820 22 6 -0.1977 -6.0688 -2.3732 23 7 0.4522 -7.0470 -1.7812 24 14 -1.8479 -6.3996 -3.1836 25 1 -2.3702 -5.1413 -3.7748 26 1 -1.6795 -7.4166 -4.2524 27 1 -2.8062 -6.9035 -2.1673 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 1.7446 4.0417 0.4871 36 1 3.2636 3.4593 1.2095 37 1 3.1970 5.5140 0.7906 38 1 3.9551 7.8364 1.0916 39 1 2.1533 7.9293 4.9584 40 1 1.4006 5.6039 4.6672 41 1 1.5610 -0.3873 -2.0627 42 1 3.0796 -0.6611 -1.1756 43 1 3.8480 -2.7291 -2.8520 44 1 2.5565 -3.3307 -3.9188 45 1 2.5094 -1.6543 -3.3222 46 1 2.4360 -5.1502 -2.2116 47 1 1.6094 -4.7730 -0.6810 48 1 0.0743 -7.9402 -1.7652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052450851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = -44.360393 kcal Electronic energy + Delta-G solvation = -27575.969374 eV Core-core repulsion = 23464.588861 eV Total energy + Delta-G solvation = -4111.380513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63718 -39.31144 -38.28198 -37.10873 -36.56182 -34.75211 -32.91748 -32.56171 -31.62494 -29.98843 -28.79727 -27.28527 -26.79743 -25.65260 -24.21130 -23.20419 -22.56989 -21.86803 -20.92626 -18.74975 -18.38212 -17.06294 -16.75812 -16.59334 -16.55262 -16.34197 -15.62592 -15.47923 -15.07412 -14.90998 -14.56930 -14.36848 -14.06432 -13.91923 -13.80290 -13.50275 -13.33258 -12.76575 -12.65973 -12.39682 -12.22749 -12.20197 -12.05832 -11.95354 -11.82800 -11.62922 -11.47362 -11.28249 -11.24046 -11.18385 -11.09828 -10.83384 -10.73912 -10.59219 -10.15726 -9.63504 -9.61502 -8.91454 -8.59168 -8.44965 -8.19815 -7.62760 -6.05406 -4.10263 0.71227 0.74597 1.72878 2.64910 3.12359 3.28255 3.35499 3.38330 3.45346 3.65598 4.18993 4.23899 4.29994 4.44061 4.52375 4.58641 4.69914 4.78982 4.86755 4.94013 5.01691 5.08994 5.13476 5.29064 5.31511 5.36155 5.39154 5.43624 5.48519 5.63456 5.68771 5.70936 5.73802 5.75598 5.80152 5.91160 5.94855 6.08594 6.17669 6.38923 6.88688 6.91212 7.07601 7.14359 7.45399 7.54905 7.91365 8.22648 8.42777 8.90114 9.12851 9.55057 11.02629 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.001310 C = 0.001289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.323224 B =21373.644129 C =21718.572019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.060 3.940 4 C -0.117 4.117 5 C 0.060 3.940 6 O -0.308 6.308 7 C 0.141 3.859 8 C -0.199 4.199 9 C -0.069 4.069 10 C -0.077 4.077 11 Cl -0.074 7.074 12 C -0.070 4.070 13 C -0.142 4.142 14 C 0.038 3.962 15 C 0.505 3.495 16 O -0.523 6.523 17 N -0.605 5.605 18 C 0.084 3.916 19 C 0.246 3.754 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.282 1.282 28 H 0.018 0.982 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.044 0.956 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 30.755 5.412 32.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.068 4.068 4 C -0.155 4.155 5 C -0.015 4.015 6 O -0.221 6.221 7 C 0.095 3.905 8 C -0.218 4.218 9 C -0.087 4.087 10 C -0.104 4.104 11 Cl -0.046 7.046 12 C -0.089 4.089 13 C -0.161 4.161 14 C -0.093 4.093 15 C 0.290 3.710 16 O -0.399 6.399 17 N -0.339 5.339 18 C -0.061 4.061 19 C 0.127 3.873 20 C -0.565 4.565 21 H 0.075 0.925 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.208 1.208 28 H 0.036 0.964 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.062 0.938 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.516 30.110 6.533 31.714 hybrid contribution -0.922 0.345 -1.586 1.866 sum 6.594 30.455 4.947 31.551 Atomic orbital electron populations 1.22635 0.86245 1.04740 0.99555 1.61543 1.09155 1.11507 1.42375 1.21962 1.00328 0.88865 0.95656 1.21517 1.02683 0.91890 0.99365 1.22862 1.00240 0.93978 0.84425 1.86107 1.73473 1.23057 1.39487 1.19117 0.93128 0.84176 0.94074 1.21265 1.04013 0.96176 1.00351 1.20850 0.98148 0.93686 0.96049 1.20789 1.04879 0.87332 0.97393 1.98368 1.89418 1.19382 1.97402 1.20878 0.95865 0.93822 0.98287 1.20437 1.04420 0.94038 0.97173 1.22052 1.01164 0.93556 0.92541 1.20107 0.80590 0.86879 0.83384 1.90641 1.39082 1.79984 1.30218 1.48164 1.53911 1.10694 1.21090 1.21627 0.94929 0.99682 0.89822 1.19278 0.95504 0.73761 0.98774 1.21469 1.04684 0.94636 1.35716 0.92514 1.24938 0.97677 0.96016 0.95474 1.69945 1.38568 1.01296 1.43488 0.86453 0.83831 0.78120 0.79055 1.19877 1.20969 1.20849 0.96384 0.88570 0.91446 0.94727 0.90531 0.89505 0.90409 0.91851 0.91601 0.84422 0.84679 0.84257 0.84073 0.92502 0.88639 0.93734 0.90756 0.92749 0.95058 0.93772 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.96 60.06 0.54 0.77 16 2 N -0.52 -7.31 4.50 -244.38 -1.10 -8.41 16 3 C 0.06 0.58 4.96 -3.83 -0.02 0.56 16 4 C -0.12 -1.06 5.51 -26.73 -0.15 -1.21 16 5 C 0.06 0.45 4.74 37.16 0.18 0.62 16 6 O -0.31 -2.87 10.14 -19.48 -0.20 -3.07 16 7 C 0.14 1.19 6.69 -39.22 -0.26 0.93 16 8 C -0.20 -1.42 9.04 -39.44 -0.36 -1.78 16 9 C -0.07 -0.47 9.82 -39.57 -0.39 -0.86 16 10 C -0.08 -0.57 6.32 -39.49 -0.25 -0.82 16 11 Cl -0.07 -0.53 28.95 -51.86 -1.50 -2.03 16 12 C -0.07 -0.48 9.82 -39.57 -0.39 -0.87 16 13 C -0.14 -1.08 9.99 -39.44 -0.39 -1.47 16 14 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 15 C 0.50 10.28 7.36 -10.98 -0.08 10.20 16 16 O -0.52 -12.95 13.91 5.56 0.08 -12.87 16 17 N -0.61 -12.61 2.86 -182.95 -0.52 -13.14 16 18 C 0.08 1.27 10.24 59.85 0.61 1.88 16 19 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 20 C -0.53 -14.83 9.39 -34.43 -0.32 -15.15 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 24 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 1.78 5.82 -51.93 -0.30 1.48 16 30 H 0.07 0.86 6.47 -51.93 -0.34 0.53 16 31 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.75 6.55 -51.93 -0.34 0.41 16 35 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 36 H 0.07 0.40 7.67 -51.92 -0.40 0.01 16 37 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 42 H 0.10 1.14 7.90 -51.93 -0.41 0.73 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 45 H 0.05 0.66 6.44 -51.93 -0.33 0.32 16 46 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 47 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 48 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -33.73 408.49 -10.17 -43.90 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.37 Total: -2.83 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.43 Total: 1.36 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.89 Total: -47.33 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.12 Total: -15.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.73 -10.17 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052450851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.465 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds