Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.51521 * 2 1 4 4 C 1.53142 * 109.55379 * 239.86963 * 2 1 3 5 5 C 1.53081 * 109.00363 * 169.19853 * 4 2 1 6 6 C 1.51720 * 108.75362 * 50.07485 * 5 4 2 7 7 S 1.70753 * 124.54832 * 163.44931 * 6 5 4 8 8 C 1.75612 * 91.78170 * 179.97438 * 7 6 5 9 9 C 1.46462 * 125.45946 * 180.02562 * 8 7 6 10 10 O 1.21746 * 119.99847 * 186.89018 * 9 8 7 11 11 N 1.34775 * 119.99745 * 6.88915 * 9 8 7 12 12 C 1.36879 * 120.00568 * 356.29272 * 11 9 8 13 13 H 1.07999 * 120.00079 * 50.03009 * 12 11 9 14 14 C 1.39014 * 120.00021 * 230.03536 * 12 11 9 15 15 N 1.31393 * 119.99980 * 186.04993 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 6.05086 * 14 12 11 17 17 H 1.48501 * 109.46902 * 265.10344 * 16 14 12 18 18 H 1.48498 * 109.47260 * 25.09870 * 16 14 12 19 19 H 1.48491 * 109.47149 * 145.10152 * 16 14 12 20 20 C 1.46503 * 119.99635 * 176.28858 * 11 9 8 21 21 C 1.50702 * 109.47392 * 274.75741 * 20 11 9 22 22 C 1.38235 * 119.99595 * 274.96892 * 21 20 11 23 23 C 1.38239 * 119.99450 * 179.80648 * 22 21 20 24 24 C 1.38231 * 120.00346 * 0.39934 * 23 22 21 25 25 C 1.38239 * 119.99732 * 359.85330 * 24 23 22 26 26 C 1.38230 * 119.99961 * 359.95948 * 25 24 23 27 27 C 1.36231 * 109.07501 * 0.27310 * 8 7 6 28 28 C 1.35268 * 124.33008 * 343.45632 * 6 5 4 29 29 C 1.52340 * 122.99156 * 0.02562 * 28 6 5 30 30 H 1.09003 * 109.46819 * 299.90125 * 1 2 3 31 31 H 1.08997 * 109.46595 * 59.89909 * 1 2 3 32 32 H 1.08992 * 109.47332 * 179.90723 * 1 2 3 33 33 H 1.08997 * 109.55247 * 289.05610 * 4 2 1 34 34 H 1.09006 * 109.54318 * 49.24518 * 4 2 1 35 35 H 1.09005 * 109.58114 * 290.30246 * 5 4 2 36 36 H 1.08997 * 109.60316 * 169.86376 * 5 4 2 37 37 H 0.97009 * 120.00309 * 0.02562 * 15 14 12 38 38 H 1.08996 * 109.47005 * 34.75685 * 20 11 9 39 39 H 1.08997 * 109.47080 * 154.75395 * 20 11 9 40 40 H 1.08004 * 120.00176 * 0.02562 * 22 21 20 41 41 H 1.08003 * 119.99770 * 180.23556 * 23 22 21 42 42 H 1.07996 * 120.00457 * 179.83383 * 24 23 22 43 43 H 1.08004 * 119.99973 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00057 * 179.97438 * 26 25 24 45 45 H 1.08000 * 122.95536 * 179.71455 * 27 8 7 46 46 H 1.09002 * 109.57589 * 102.42431 * 29 28 6 47 47 H 1.08999 * 109.57936 * 222.83093 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0426 -0.7244 -1.2481 5 6 3.5492 -0.4867 -1.3790 6 6 4.2099 -0.8017 -0.0500 7 16 5.8835 -1.0672 0.1604 8 6 5.6807 -1.3295 1.8850 9 6 6.7568 -1.6359 2.8301 10 8 6.4909 -1.9228 3.9830 11 7 8.0412 -1.6002 2.4235 12 6 8.3368 -1.3523 1.1102 13 1 7.8914 -0.5071 0.6067 14 6 9.2104 -2.1885 0.4245 15 7 9.5871 -1.8853 -0.7972 16 14 9.8485 -3.7432 1.2400 17 1 11.1650 -3.4674 1.8694 18 1 8.8862 -4.1874 2.2801 19 1 10.0017 -4.8105 0.2191 20 6 9.1211 -1.8266 3.3873 21 6 9.4597 -0.5298 4.0763 22 6 10.3477 0.3528 3.4904 23 6 10.6551 1.5442 4.1206 24 6 10.0811 1.8491 5.3405 25 6 9.1971 0.9640 5.9289 26 6 8.8867 -0.2256 5.2969 27 6 4.3613 -1.2077 2.2017 28 6 3.5478 -0.9091 1.1246 29 6 2.0408 -0.7235 1.2474 30 1 -0.3633 0.5123 0.8909 31 1 -0.3632 0.5154 -0.8891 32 1 -0.3633 -1.0276 -0.0017 33 1 1.8487 -1.7929 -1.1552 34 1 1.5327 -0.3365 -2.1300 35 1 3.7332 0.5553 -1.6407 36 1 3.9562 -1.1375 -2.1529 37 1 9.2560 -1.0777 -1.2206 38 1 8.7994 -2.5585 4.1281 39 1 10.0015 -2.2013 2.8651 40 1 10.7984 0.1133 2.5386 41 1 11.3460 2.2355 3.6610 42 1 10.3233 2.7786 5.8341 43 1 8.7489 1.2020 6.8823 44 1 8.1964 -0.9173 5.7568 45 1 3.9845 -1.3308 3.2063 46 1 1.5583 -1.6975 1.3288 47 1 1.8170 -0.1276 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = 1.005143 kcal Electronic energy + Delta-G solvation = -29127.687731 eV Core-core repulsion = 25365.741474 eV Total energy + Delta-G solvation = -3761.946257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.43320 -38.88743 -38.09889 -35.43741 -34.75120 -32.53661 -31.67991 -31.06112 -30.43885 -29.02715 -26.71523 -25.88378 -24.82466 -23.17572 -22.49286 -22.07124 -21.13852 -20.09934 -19.29176 -18.48062 -17.24469 -16.89109 -16.28770 -15.58433 -15.30436 -15.11641 -14.61443 -14.40776 -14.26159 -14.11226 -13.99239 -13.77669 -13.30833 -13.09078 -12.95074 -12.77891 -12.70116 -12.49009 -12.24867 -12.08096 -11.95828 -11.76768 -11.68966 -11.57479 -10.94963 -10.87204 -10.77903 -10.61102 -10.47171 -10.43992 -10.29585 -10.11177 -9.99662 -9.65233 -9.08512 -8.96625 -8.47569 -8.29576 -8.09027 -7.73852 -7.51514 -6.97949 -4.53412 1.41080 1.75341 1.85229 2.51107 2.96556 3.06008 3.12266 3.22187 3.35278 4.00879 4.06304 4.20555 4.52366 4.78607 4.80778 4.87110 4.96230 5.28682 5.29234 5.31228 5.40227 5.43584 5.53288 5.61194 5.65297 5.67766 5.76904 5.78222 5.89455 5.91203 5.94699 5.95992 6.00746 6.06871 6.10655 6.17232 6.21831 6.26690 6.35478 6.43403 6.47150 6.52235 6.73287 6.88986 6.89770 7.02336 7.17363 7.18914 7.43520 7.50011 7.57530 8.07186 8.69373 9.02717 9.51893 10.29491 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.003745 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.001542 B = 7475.252170 C = 8828.315556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.108 4.108 5 C -0.042 4.042 6 C -0.285 4.285 7 S 0.305 5.695 8 C -0.233 4.233 9 C 0.558 3.442 10 O -0.585 6.585 11 N -0.458 5.458 12 C -0.416 4.416 13 H 0.099 0.901 14 C 0.043 3.957 15 N -0.852 5.852 16 Si 1.045 2.955 17 H -0.275 1.275 18 H -0.271 1.271 19 H -0.281 1.281 20 C 0.141 3.859 21 C -0.087 4.087 22 C -0.094 4.094 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.098 4.098 27 C -0.090 4.090 28 C -0.129 4.129 29 C -0.048 4.048 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.280 0.720 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 4.041 1.559 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.403 4.403 7 S 0.582 5.418 8 C -0.354 4.354 9 C 0.348 3.652 10 O -0.470 6.470 11 N -0.178 5.178 12 C -0.550 4.550 13 H 0.115 0.885 14 C -0.171 4.171 15 N -0.481 5.481 16 Si 0.871 3.129 17 H -0.202 1.202 18 H -0.196 1.196 19 H -0.207 1.207 20 C 0.019 3.981 21 C -0.088 4.088 22 C -0.113 4.113 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.141 4.141 29 C -0.087 4.087 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.864 2.589 0.801 5.568 hybrid contribution -2.186 1.589 1.097 2.917 sum -7.050 4.178 1.898 8.412 Atomic orbital electron populations 1.21835 0.95432 1.01649 1.01391 1.21104 0.94827 0.99794 0.95139 0.91218 1.21587 0.95057 1.00753 0.97286 1.20187 0.94364 1.01099 0.92441 1.26054 1.06486 1.09242 0.98565 1.84708 0.95236 1.61031 1.00838 1.24223 0.97340 1.15053 0.98802 1.17285 0.82171 0.79269 0.86457 1.90651 1.83706 1.53280 1.19368 1.43499 1.02434 1.63816 1.08035 1.20453 1.33994 1.15178 0.85366 0.88459 1.26561 0.93927 1.01340 0.95267 1.70789 1.38595 1.26337 1.12398 0.83940 0.77087 0.75775 0.76059 1.20195 1.19599 1.20725 1.20612 0.91408 0.93660 0.92432 1.20314 0.96294 0.97733 0.94464 1.21150 0.97219 0.93612 0.99286 1.21070 1.00801 0.97186 0.95779 1.21032 0.98277 0.99213 0.96164 1.21058 0.99015 0.94827 1.00046 1.21207 0.98484 0.97036 0.94965 1.20276 0.91189 1.01455 0.99415 1.19177 0.95824 1.07298 0.91819 1.20490 0.90962 0.99914 0.97304 0.92800 0.92876 0.92755 0.91835 0.91941 0.91133 0.91095 0.90847 0.90217 0.90678 0.85722 0.86619 0.86862 0.86706 0.85668 0.84939 0.91511 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.17 37.16 0.34 -1.06 16 2 C -0.09 -1.08 2.68 -90.56 -0.24 -1.32 16 3 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 4 C -0.11 -1.30 5.24 -26.62 -0.14 -1.44 16 5 C -0.04 -0.60 6.22 -27.34 -0.17 -0.77 16 6 C -0.29 -5.00 6.16 -34.86 -0.21 -5.22 16 7 S 0.30 6.15 18.30 -107.50 -1.97 4.18 16 8 C -0.23 -5.18 6.28 -36.99 -0.23 -5.41 16 9 C 0.56 13.47 7.56 -12.95 -0.10 13.37 16 10 O -0.58 -14.77 16.20 5.15 0.08 -14.68 16 11 N -0.46 -10.71 2.03 -117.65 -0.24 -10.94 16 12 C -0.42 -9.91 7.19 -15.01 -0.11 -10.02 16 13 H 0.10 2.41 5.58 -32.07 -0.18 2.23 16 14 C 0.04 1.03 5.44 -17.45 -0.09 0.93 16 15 N -0.85 -21.39 13.69 55.50 0.76 -20.63 16 16 Si 1.04 22.57 25.14 -169.99 -4.27 18.30 16 17 H -0.28 -5.55 6.95 56.52 0.39 -5.15 16 18 H -0.27 -5.87 6.84 56.52 0.39 -5.49 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.14 3.01 3.83 -5.19 -0.02 2.99 16 21 C -0.09 -1.71 5.43 -104.62 -0.57 -2.28 16 22 C -0.09 -1.74 9.72 -39.58 -0.38 -2.13 16 23 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 26 C -0.10 -1.82 9.66 -39.59 -0.38 -2.20 16 27 C -0.09 -1.80 9.81 -40.30 -0.40 -2.20 16 28 C -0.13 -2.26 5.75 -104.86 -0.60 -2.87 16 29 C -0.05 -0.67 5.42 -27.08 -0.15 -0.81 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.28 6.92 8.72 -40.82 -0.36 6.56 16 38 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 39 H 0.08 1.56 4.05 -51.93 -0.21 1.35 16 40 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 41 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 44 H 0.13 2.36 7.80 -52.48 -0.41 1.95 16 45 H 0.13 2.59 8.05 -52.49 -0.42 2.16 16 46 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -27.01 387.09 -11.15 -38.16 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.69 Total: 7.51 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -4.65 Total: -27.73 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.52 Total: -31.57 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.27 Total: 18.30 kcal Atomic # 16 Polarization: 6.15 SS G_CDS: -1.97 Total: 4.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.01 -11.15 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.169 kcal (2) G-P(sol) polarization free energy of solvation -27.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds