Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.50867 * 2 1 4 4 C 1.53148 * 109.51380 * 120.10232 * 2 1 3 5 5 C 1.53085 * 108.98765 * 190.84338 * 4 2 1 6 6 C 1.51720 * 108.75068 * 309.89441 * 5 4 2 7 7 S 1.70749 * 124.55061 * 196.58150 * 6 5 4 8 8 C 1.75612 * 91.78630 * 179.97438 * 7 6 5 9 9 C 1.46458 * 125.46279 * 179.97438 * 8 7 6 10 10 O 1.21741 * 119.99881 * 174.24198 * 9 8 7 11 11 N 1.34775 * 119.99919 * 354.24209 * 9 8 7 12 12 C 1.36884 * 120.00104 * 3.58040 * 11 9 8 13 13 H 1.08002 * 119.99875 * 308.31387 * 12 11 9 14 14 C 1.39007 * 119.99758 * 128.31348 * 12 11 9 15 15 N 1.31393 * 119.99943 * 2.70251 * 14 12 11 16 16 Si 1.86803 * 119.99867 * 182.70639 * 14 12 11 17 17 H 1.48494 * 109.47285 * 89.99899 * 16 14 12 18 18 H 1.48498 * 109.47113 * 210.00135 * 16 14 12 19 19 H 1.48498 * 109.46846 * 329.99607 * 16 14 12 20 20 C 1.46500 * 119.99751 * 183.58109 * 11 9 8 21 21 C 1.50703 * 109.47305 * 94.61483 * 20 11 9 22 22 C 1.38235 * 119.99759 * 274.47564 * 21 20 11 23 23 C 1.38236 * 119.99545 * 179.80926 * 22 21 20 24 24 C 1.38235 * 120.00478 * 0.38967 * 23 22 21 25 25 C 1.38235 * 119.99415 * 359.85742 * 24 23 22 26 26 C 1.38232 * 120.00520 * 359.95845 * 25 24 23 27 27 C 1.36243 * 109.07365 * 0.02562 * 8 7 6 28 28 C 1.35269 * 124.32720 * 16.56263 * 6 5 4 29 29 C 1.52330 * 122.99178 * 0.02562 * 28 6 5 30 30 H 1.08995 * 109.46809 * 299.89709 * 1 2 3 31 31 H 1.09000 * 109.47126 * 59.89891 * 1 2 3 32 32 H 1.08999 * 109.46792 * 179.89765 * 1 2 3 33 33 H 1.09003 * 109.54839 * 70.98913 * 4 2 1 34 34 H 1.09001 * 109.55185 * 310.69690 * 4 2 1 35 35 H 1.08998 * 109.59502 * 69.67403 * 5 4 2 36 36 H 1.09009 * 109.59301 * 190.11985 * 5 4 2 37 37 H 0.97004 * 120.00041 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.46727 * 214.61443 * 20 11 9 39 39 H 1.09003 * 109.46960 * 334.61715 * 20 11 9 40 40 H 1.08005 * 120.00570 * 359.97438 * 22 21 20 41 41 H 1.08005 * 119.99956 * 180.21866 * 23 22 21 42 42 H 1.08001 * 120.00432 * 179.83447 * 24 23 22 43 43 H 1.08003 * 119.99824 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00284 * 179.97438 * 26 25 24 45 45 H 1.07998 * 122.95400 * 179.97438 * 27 8 7 46 46 H 1.08999 * 109.58029 * 257.53243 * 29 28 6 47 47 H 1.09001 * 109.58109 * 137.13057 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0416 -0.7240 1.2488 5 6 3.5480 -0.4857 1.3807 6 6 4.2099 -0.8016 0.0525 7 16 5.8836 -1.0674 -0.1564 8 6 5.6821 -1.3322 -1.8807 9 6 6.7588 -1.6400 -2.8246 10 8 6.4950 -1.9085 -3.9824 11 7 8.0416 -1.6260 -2.4115 12 6 8.3339 -1.3965 -1.0941 13 1 7.9185 -0.5359 -0.5908 14 6 9.1654 -2.2710 -0.4040 15 7 9.7132 -3.2881 -1.0299 16 14 9.5038 -2.0001 1.4130 17 1 8.4878 -2.7236 2.2189 18 1 10.8569 -2.5130 1.7464 19 1 9.4357 -0.5484 1.7181 20 6 9.1231 -1.8566 -3.3724 21 6 9.6387 -0.5329 -3.8756 22 6 9.0174 0.0908 -4.9414 23 6 9.4879 1.3068 -5.4004 24 6 10.5846 1.8954 -4.7989 25 6 11.2089 1.2692 -3.7364 26 6 10.7362 0.0550 -3.2748 27 6 4.3638 -1.2043 -2.1997 28 6 3.5487 -0.9097 -1.1226 29 6 2.0420 -0.7232 -1.2468 30 1 -0.3633 0.5122 0.8909 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0018 33 1 1.8480 -1.7927 1.1559 34 1 1.5322 -0.3349 2.1304 35 1 3.7318 0.5565 1.6419 36 1 3.9546 -1.1360 2.1554 37 1 10.2938 -3.8982 -0.5485 38 1 9.9324 -2.4001 -2.8850 39 1 8.7455 -2.4419 -4.2109 40 1 8.1628 -0.3707 -5.4138 41 1 9.0004 1.7959 -6.2309 42 1 10.9538 2.8442 -5.1593 43 1 12.0660 1.7287 -3.2666 44 1 11.2242 -0.4345 -2.4450 45 1 3.9885 -1.3228 -3.2055 46 1 1.5589 -1.6969 -1.3283 47 1 1.8194 -0.1275 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = -1.817076 kcal Electronic energy + Delta-G solvation = -29056.489586 eV Core-core repulsion = 25294.420949 eV Total energy + Delta-G solvation = -3762.068638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.19312 -38.82497 -37.93702 -35.32324 -34.65968 -32.11446 -31.66823 -30.89466 -30.29437 -28.94000 -26.65356 -25.86834 -25.01339 -23.13922 -22.47340 -21.93109 -20.87772 -19.99501 -19.35664 -18.17227 -17.23449 -16.57860 -15.95292 -15.59440 -14.99342 -14.73040 -14.55264 -14.41204 -14.24404 -14.11160 -13.86290 -13.77487 -13.33306 -12.91297 -12.82436 -12.74903 -12.31610 -12.26057 -12.06930 -11.95397 -11.87847 -11.66157 -11.56264 -11.36876 -11.21199 -10.88051 -10.82287 -10.62736 -10.52567 -10.48355 -10.40420 -10.29367 -10.21444 -9.77163 -9.08115 -8.81211 -8.34175 -8.12044 -7.84542 -7.51103 -7.46245 -6.59612 -4.52219 1.46162 1.92920 1.98816 2.50256 2.93732 3.06486 3.07181 3.10911 3.13637 3.87431 4.26365 4.36608 4.75590 4.79336 4.83051 4.90616 5.00293 5.32191 5.41658 5.44872 5.46519 5.54116 5.56965 5.66709 5.70747 5.79158 5.84891 5.91570 5.93330 5.96552 6.05179 6.08859 6.13630 6.17442 6.19061 6.26083 6.38075 6.46567 6.48369 6.59835 6.72101 6.80724 7.00547 7.02440 7.05597 7.08951 7.21568 7.23816 7.46340 7.61017 7.83482 8.09710 8.77590 9.27599 9.72466 10.36553 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.003771 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.816442 B = 7423.771692 C = 8921.367579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.042 4.042 6 C -0.284 4.284 7 S 0.279 5.721 8 C -0.219 4.219 9 C 0.550 3.450 10 O -0.591 6.591 11 N -0.431 5.431 12 C -0.338 4.338 13 H 0.097 0.903 14 C 0.067 3.933 15 N -0.846 5.846 16 Si 0.900 3.100 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.260 1.260 20 C 0.143 3.857 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.095 4.095 27 C -0.094 4.094 28 C -0.125 4.125 29 C -0.048 4.048 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.277 0.723 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.134 0.866 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 6.112 3.367 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.402 4.402 7 S 0.555 5.445 8 C -0.340 4.340 9 C 0.340 3.660 10 O -0.477 6.477 11 N -0.148 5.148 12 C -0.473 4.473 13 H 0.113 0.887 14 C -0.144 4.144 15 N -0.479 5.479 16 Si 0.724 3.276 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.183 1.183 20 C 0.020 3.980 21 C -0.078 4.078 22 C -0.126 4.126 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.114 4.114 27 C -0.127 4.127 28 C -0.137 4.137 29 C -0.087 4.087 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.151 0.849 46 H 0.085 0.915 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.991 5.780 3.860 8.557 hybrid contribution -1.006 0.144 -0.114 1.023 sum -5.998 5.924 3.745 9.225 Atomic orbital electron populations 1.21836 0.95452 1.01647 1.01380 1.21102 0.94813 0.99812 0.95137 0.91186 1.21593 0.95053 1.00772 0.97283 1.20193 0.94384 1.01065 0.92459 1.25914 1.05985 1.09732 0.98552 1.84352 0.96246 1.61932 1.01974 1.24307 0.97595 1.13896 0.98186 1.17362 0.82424 0.79746 0.86482 1.90647 1.83584 1.54446 1.19068 1.43090 1.02263 1.62047 1.07435 1.19238 1.32519 1.10295 0.85199 0.88667 1.25614 0.95310 0.93663 0.99777 1.69668 1.28000 1.13216 1.37010 0.86298 0.78786 0.79999 0.82524 1.18949 1.20058 1.18346 1.20590 0.93003 0.91708 0.92707 1.20609 0.94530 0.98312 0.94307 1.21270 0.99369 0.95122 0.96854 1.21044 0.97347 0.96171 1.00408 1.20970 0.97093 0.99690 0.97511 1.21056 1.00269 0.96109 0.97559 1.21123 0.96333 0.95046 0.98863 1.20301 0.91265 1.01698 0.99437 1.19183 0.95784 1.06951 0.91812 1.20488 0.90968 0.99945 0.97309 0.92900 0.92789 0.92765 0.91819 0.91971 0.91105 0.91182 0.91191 0.86334 0.91389 0.85975 0.87001 0.87120 0.86907 0.86008 0.84861 0.91498 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.17 37.16 0.34 -1.04 16 2 C -0.09 -1.06 2.68 -90.56 -0.24 -1.31 16 3 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 4 C -0.11 -1.28 5.24 -26.61 -0.14 -1.42 16 5 C -0.04 -0.58 6.22 -27.34 -0.17 -0.75 16 6 C -0.28 -4.90 6.16 -34.86 -0.21 -5.12 16 7 S 0.28 5.51 18.31 -107.50 -1.97 3.54 16 8 C -0.22 -4.92 6.28 -36.99 -0.23 -5.15 16 9 C 0.55 13.80 7.60 -12.95 -0.10 13.70 16 10 O -0.59 -15.76 16.17 5.15 0.08 -15.68 16 11 N -0.43 -10.52 2.45 -117.66 -0.29 -10.81 16 12 C -0.34 -8.01 6.71 -15.01 -0.10 -8.11 16 13 H 0.10 2.22 5.45 -33.12 -0.18 2.04 16 14 C 0.07 1.55 5.38 -17.45 -0.09 1.46 16 15 N -0.85 -20.46 11.16 55.50 0.62 -19.84 16 16 Si 0.90 17.88 29.55 -169.99 -5.02 12.85 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 C 0.14 3.30 5.26 -5.19 -0.03 3.27 16 21 C -0.08 -1.59 5.43 -104.62 -0.57 -2.16 16 22 C -0.11 -2.12 9.72 -39.58 -0.38 -2.51 16 23 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 24 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 25 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 26 C -0.09 -1.81 9.68 -39.58 -0.38 -2.19 16 27 C -0.09 -1.90 9.81 -40.29 -0.40 -2.30 16 28 C -0.12 -2.19 5.75 -104.87 -0.60 -2.79 16 29 C -0.05 -0.67 5.42 -27.09 -0.15 -0.82 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 38 H 0.12 2.84 5.56 -51.93 -0.29 2.55 16 39 H 0.07 1.63 7.22 -51.93 -0.37 1.25 16 40 H 0.12 2.52 7.90 -52.48 -0.41 2.11 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 44 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.13 2.65 8.05 -52.49 -0.42 2.23 16 46 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -26.95 391.63 -12.06 -39.01 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.73 Total: 9.94 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -4.65 Total: -24.92 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.33 Total: -30.65 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.85 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.97 Total: 3.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.95 -12.06 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.190 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds