Wall clock time and date at job start Tue Mar 31 2020 05:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99722 * 2 1 4 4 H 1.48508 * 109.47104 * 270.00191 * 3 2 1 5 5 H 1.48499 * 109.47283 * 30.00236 * 3 2 1 6 6 H 1.48503 * 109.47178 * 150.00288 * 3 2 1 7 7 C 1.38969 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00360 * 169.15053 * 7 2 1 9 9 N 1.36942 * 119.99864 * 349.14344 * 7 2 1 10 10 C 1.46497 * 120.00136 * 316.66370 * 9 7 2 11 11 C 1.50696 * 109.47531 * 264.17512 * 10 9 7 12 12 C 1.38236 * 119.99874 * 271.00770 * 11 10 9 13 13 C 1.38234 * 119.99805 * 179.76742 * 12 11 10 14 14 C 1.38236 * 120.00140 * 0.49942 * 13 12 11 15 15 C 1.38233 * 119.99576 * 359.75596 * 14 13 12 16 16 C 1.38232 * 119.99846 * 91.27556 * 11 10 9 17 17 C 1.34776 * 119.99638 * 136.66579 * 9 7 2 18 18 O 1.21678 * 120.00013 * 184.62337 * 17 9 7 19 19 C 1.47195 * 120.00474 * 4.62802 * 17 9 7 20 20 C 1.36290 * 122.55511 * 178.35926 * 19 17 9 21 21 S 1.70994 * 109.05930 * 179.77378 * 20 19 17 22 22 C 1.75965 * 90.66488 * 0.31138 * 21 20 19 23 23 C 1.47122 * 125.22948 * 179.97438 * 22 21 20 24 24 C 1.36260 * 125.95885 * 359.69769 * 23 22 21 25 25 C 1.40755 * 106.72032 * 180.02562 * 24 23 22 26 26 C 1.34839 * 107.07616 * 359.97438 * 25 24 23 27 27 O 1.34241 * 108.72612 * 0.22894 * 26 25 24 28 28 N 1.30069 * 109.54417 * 359.68029 * 22 21 20 29 29 H 0.96998 * 120.00661 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47097 * 24.18173 * 10 9 7 31 31 H 1.09006 * 109.46737 * 144.17700 * 10 9 7 32 32 H 1.07998 * 120.00203 * 359.97438 * 12 11 10 33 33 H 1.07997 * 120.00099 * 180.23195 * 13 12 11 34 34 H 1.07994 * 120.00035 * 179.72800 * 14 13 12 35 35 H 1.08003 * 119.99795 * 179.97438 * 15 14 13 36 36 H 1.07993 * 120.00281 * 0.02562 * 16 11 10 37 37 H 1.08001 * 125.47350 * 0.02562 * 20 19 17 38 38 H 1.08001 * 126.64072 * 0.04868 * 24 23 22 39 39 H 1.08000 * 126.46100 * 180.02562 * 25 24 23 40 40 H 1.08008 * 125.64153 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0091 -1.2035 -0.0005 8 1 3.0746 -1.2118 -0.1766 9 7 1.3428 -2.3789 0.2223 10 6 0.3364 -2.4606 1.2838 11 6 0.9676 -3.0198 2.5327 12 6 0.9929 -4.3860 2.7421 13 6 1.5762 -4.8992 3.8855 14 6 2.1251 -4.0457 4.8243 15 6 2.0950 -2.6793 4.6172 16 6 1.5164 -2.1663 3.4714 17 6 1.6129 -3.4606 -0.5349 18 8 0.9632 -4.4797 -0.3939 19 6 2.6941 -3.4094 -1.5324 20 6 3.0330 -4.4817 -2.3024 21 16 4.3195 -4.0406 -3.3388 22 6 4.3357 -2.4167 -2.6614 23 6 5.2479 -1.3365 -3.0681 24 6 6.2184 -1.4250 -4.0204 25 6 6.8434 -0.1652 -4.0799 26 6 6.2321 0.6233 -3.1728 27 8 5.2726 -0.0882 -2.5604 28 7 3.4130 -2.3162 -1.7501 29 1 -0.4851 0.8400 0.0004 30 1 -0.0563 -1.4648 1.4896 31 1 -0.4765 -3.1128 0.9642 32 1 0.5599 -5.0525 2.0110 33 1 1.5994 -5.9667 4.0474 34 1 2.5769 -4.4464 5.7196 35 1 2.5235 -2.0125 5.3508 36 1 1.4924 -1.0988 3.3100 37 1 2.5617 -5.4528 -2.2668 38 1 6.4610 -2.2935 -4.6148 39 1 7.6582 0.1170 -4.7302 40 1 6.4770 1.6554 -2.9694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054629623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:00 Heat of formation + Delta-G solvation = 76.338870 kcal Electronic energy + Delta-G solvation = -28380.404087 eV Core-core repulsion = 24447.777018 eV Total energy + Delta-G solvation = -3932.627069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42139 -39.70930 -38.65121 -37.34728 -34.90450 -33.05618 -31.86940 -31.39862 -30.64927 -30.27317 -28.55227 -26.37251 -25.13657 -24.27707 -22.32784 -21.90733 -21.76873 -20.61838 -19.96477 -18.86854 -18.30334 -17.19064 -17.03268 -16.08119 -16.00166 -15.37214 -15.12296 -14.78271 -14.50768 -14.33290 -14.23168 -14.14302 -13.37397 -13.18997 -13.02343 -12.86810 -12.80725 -12.73016 -12.39666 -12.11711 -11.98065 -11.67291 -11.39009 -11.16957 -10.97020 -10.82008 -10.44755 -10.34428 -10.17575 -10.01038 -9.60302 -9.33319 -9.02475 -8.94518 -8.62980 -8.32010 -8.10332 -7.82826 -7.40231 -6.31816 -4.01214 0.52844 1.29868 1.83714 1.88609 1.97803 2.00870 2.48592 3.05349 3.19698 3.24369 3.27275 3.32091 4.11287 4.21258 4.32737 4.41989 4.85625 4.94749 4.99350 5.08119 5.39334 5.43310 5.48557 5.58907 5.64661 5.75293 5.78893 5.87827 5.90920 6.05505 6.11976 6.19087 6.37890 6.42468 6.56154 6.62268 6.77883 7.04286 7.06904 7.12387 7.17347 7.45795 7.61895 7.67663 7.90200 8.04274 8.55633 9.11429 9.41281 9.84445 10.71756 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.004322 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.261190 B = 6476.387148 C = 7819.253437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.041 3.959 3 Si 0.916 3.084 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.119 0.881 9 N -0.404 5.404 10 C 0.148 3.852 11 C -0.081 4.081 12 C -0.103 4.103 13 C -0.133 4.133 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.097 4.097 17 C 0.529 3.471 18 O -0.598 6.598 19 C 0.060 3.940 20 C -0.233 4.233 21 S 0.161 5.839 22 C 0.079 3.921 23 C 0.073 3.927 24 C -0.186 4.186 25 C -0.214 4.214 26 C -0.027 4.027 27 O -0.145 6.145 28 N -0.363 5.363 29 H 0.268 0.732 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.188 0.812 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.540 -2.257 -3.148 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.136 0.864 9 N -0.119 5.119 10 C 0.025 3.975 11 C -0.083 4.083 12 C -0.121 4.121 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.115 4.115 17 C 0.316 3.684 18 O -0.485 6.485 19 C -0.076 4.076 20 C -0.375 4.375 21 S 0.417 5.583 22 C -0.195 4.195 23 C 0.018 3.982 24 C -0.209 4.209 25 C -0.233 4.233 26 C -0.098 4.098 27 O -0.039 6.039 28 N -0.078 5.078 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.205 0.795 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.281 -2.529 -3.287 11.086 hybrid contribution -0.121 0.949 0.420 1.045 sum 10.160 -1.581 -2.867 10.675 Atomic orbital electron populations 1.69845 1.06132 1.27680 1.47362 1.25467 0.95160 0.99870 0.95844 0.86078 0.79630 0.81294 0.78742 1.20069 1.21114 1.19160 1.20198 0.94340 0.82161 1.47067 0.86364 1.43313 1.34143 1.09333 1.25087 1.20491 0.90246 1.03450 0.83295 1.20624 0.97914 0.93319 0.96400 1.21323 0.98649 0.95401 0.96745 1.21055 0.99990 0.99017 0.95056 1.20975 1.01283 0.93761 0.99203 1.21046 1.00919 0.95141 0.97939 1.21136 0.97030 1.00062 0.93307 1.17332 0.84155 0.85510 0.81436 1.90627 1.52972 1.33114 1.71739 1.20751 0.99210 0.87153 1.00533 1.26780 1.03368 1.05452 1.01912 1.83250 1.30398 1.07330 1.37273 1.24798 0.99900 0.94790 1.00038 1.19023 0.98127 0.83170 0.97850 1.21706 0.98092 0.99868 1.01247 1.21647 1.04423 0.93696 1.03571 1.24280 0.90883 0.98235 0.96370 1.84281 1.46773 1.20464 1.52333 1.67985 1.02408 1.25732 1.11654 0.92133 0.86473 0.91615 0.85551 0.86978 0.87120 0.86889 0.86052 0.79503 0.82995 0.83002 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.27 11.33 55.50 0.63 -22.64 16 2 C 0.04 1.06 5.11 -17.46 -0.09 0.97 16 3 Si 0.92 20.59 29.57 -169.99 -5.03 15.57 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.08 7.85 -15.00 -0.12 -8.20 16 8 H 0.12 3.16 5.66 -52.48 -0.30 2.87 16 9 N -0.40 -10.39 2.49 -117.40 -0.29 -10.68 16 10 C 0.15 3.56 5.00 -5.20 -0.03 3.53 16 11 C -0.08 -1.74 5.41 -104.63 -0.57 -2.31 16 12 C -0.10 -2.05 9.47 -39.58 -0.37 -2.43 16 13 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 14 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 15 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 16 C -0.10 -1.91 9.70 -39.58 -0.38 -2.29 16 17 C 0.53 13.38 7.56 -12.62 -0.10 13.28 16 18 O -0.60 -15.46 15.24 5.21 0.08 -15.38 16 19 C 0.06 1.35 6.53 -84.58 -0.55 0.80 16 20 C -0.23 -4.21 10.62 30.03 0.32 -3.89 16 21 S 0.16 2.32 22.91 -107.50 -2.46 -0.14 16 22 C 0.08 1.46 7.45 -14.69 -0.11 1.35 16 23 C 0.07 1.21 7.24 -36.69 -0.27 0.95 16 24 C -0.19 -2.41 10.62 -39.34 -0.42 -2.82 16 25 C -0.21 -2.41 10.88 -39.84 -0.43 -2.84 16 26 C -0.03 -0.34 12.08 29.53 0.36 0.02 16 27 O -0.14 -2.54 10.67 4.54 0.05 -2.50 16 28 N -0.36 -8.09 6.90 -8.07 -0.06 -8.15 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.12 2.95 5.59 -51.93 -0.29 2.66 16 31 H 0.07 1.62 7.49 -51.93 -0.39 1.23 16 32 H 0.13 2.63 7.20 -52.49 -0.38 2.25 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.19 3.07 8.01 -52.49 -0.42 2.65 16 38 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.21 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -31.30 364.76 -9.40 -40.70 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -3.87 Total: 9.49 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.95 Total: -11.77 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.28 Total: -41.47 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.13 Total: -17.87 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.46 Total: -0.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.30 -9.40 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054629623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.038 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds