Wall clock time and date at job start Tue Mar 31 2020 05:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39709 * 120.19858 * 327.62945 * 3 2 1 5 5 C 1.37827 * 119.90389 * 180.02562 * 4 3 2 6 6 C 1.38524 * 120.30211 * 359.73159 * 5 4 3 7 7 C 1.38091 * 120.39532 * 0.55085 * 6 5 4 8 8 C 1.38675 * 120.08813 * 359.44839 * 7 6 5 9 9 O 1.35683 * 120.15229 * 180.25255 * 8 7 6 10 10 C 1.35945 * 117.99861 * 260.35871 * 9 8 7 11 11 C 1.38752 * 119.98824 * 4.92082 * 10 9 8 12 12 C 1.38076 * 120.01059 * 179.76619 * 11 10 9 13 13 C 1.38859 * 119.98479 * 0.50801 * 12 11 10 14 14 N 1.40096 * 120.01038 * 179.72224 * 13 12 11 15 15 C 1.34773 * 120.00233 * 215.15294 * 14 13 12 16 16 O 1.21297 * 119.99899 * 355.55121 * 15 14 13 17 17 C 1.50695 * 120.00475 * 175.55114 * 15 14 13 18 18 S 1.80999 * 109.47330 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99856 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00505 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99980 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00235 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00130 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47159 * 59.99987 * 23 21 19 25 25 H 1.48502 * 109.47291 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47329 * 299.99943 * 23 21 19 27 27 C 1.38855 * 119.98026 * 359.74375 * 13 12 11 28 28 C 1.38074 * 119.98286 * 0.02562 * 27 13 12 29 29 H 1.08005 * 120.04704 * 0.02562 * 4 3 2 30 30 H 1.08008 * 119.84416 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.79896 * 180.29512 * 6 5 4 32 32 H 1.08003 * 119.95571 * 179.72102 * 7 6 5 33 33 H 1.07996 * 119.99835 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.00700 * 180.22792 * 12 11 10 35 35 H 0.97002 * 119.99900 * 35.14741 * 14 13 12 36 36 H 1.09006 * 109.46717 * 299.99835 * 17 15 14 37 37 H 1.08996 * 109.47285 * 59.99470 * 17 15 14 38 38 H 0.96996 * 120.00184 * 179.97438 * 22 21 19 39 39 H 1.07998 * 120.00749 * 179.97438 * 27 13 12 40 40 H 1.08003 * 119.99248 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2711 -1.0189 0.6465 5 6 4.6494 -1.0120 0.6431 6 6 5.3417 -0.0013 -0.0034 7 6 4.6593 1.0157 -0.6413 8 6 3.2726 1.0249 -0.6482 9 8 2.6007 2.0207 -1.2790 10 6 2.1093 3.0378 -0.5226 11 6 2.3882 3.0895 0.8356 12 6 1.8933 4.1249 1.6033 13 6 1.1076 5.1089 1.0179 14 7 0.6003 6.1565 1.7975 15 6 -0.6183 6.6664 1.5305 16 8 -1.2419 6.2743 0.5668 17 6 -1.2063 7.7236 2.4291 18 16 -2.8394 8.2005 1.8113 19 6 -3.2797 9.4112 3.0133 20 1 -2.5991 9.6450 3.8187 21 6 -4.5011 10.0644 2.9253 22 7 -5.3305 9.7798 1.9435 23 14 -4.9682 11.3474 4.2001 24 1 -3.9710 12.4476 4.1835 25 1 -6.3129 11.8926 3.8841 26 1 -4.9924 10.7215 5.5466 27 6 0.8244 5.0538 -0.3404 28 6 1.3238 4.0205 -1.1080 29 1 2.7355 -1.8113 1.1481 30 1 5.1920 -1.8005 1.1436 31 1 6.4217 -0.0064 -0.0050 32 1 5.2062 1.8026 -1.1394 33 1 2.9952 2.3215 1.2917 34 1 2.1135 4.1671 2.6598 35 1 1.1262 6.5149 2.5296 36 1 -1.3020 7.3285 3.4405 37 1 -0.5527 8.5957 2.4401 38 1 -6.1843 10.2360 1.8822 39 1 0.2130 5.8186 -0.7961 40 1 1.1033 3.9773 -2.1644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056248623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:04 Heat of formation + Delta-G solvation = 28.302796 kcal Electronic energy + Delta-G solvation = -26183.180445 eV Core-core repulsion = 22248.470376 eV Total energy + Delta-G solvation = -3934.710069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45743 -40.16860 -38.85943 -37.41176 -36.70204 -34.35188 -32.46243 -31.96939 -31.43438 -30.87922 -30.04394 -27.94196 -25.52370 -24.64089 -23.95760 -22.87508 -22.28021 -20.48906 -19.67960 -18.66532 -18.09791 -17.51086 -16.99340 -16.79650 -16.37106 -15.74554 -15.23449 -14.83549 -14.80613 -14.69839 -14.32810 -14.16922 -14.12536 -13.85606 -13.55761 -13.50608 -13.40821 -13.18796 -13.02268 -12.66371 -12.62906 -12.53405 -12.23465 -12.06266 -11.59615 -11.24262 -11.08069 -11.06074 -10.80621 -10.00934 -9.87932 -9.65502 -9.53683 -9.36649 -9.10262 -9.09016 -8.30591 -7.87765 -6.55243 -6.24760 -3.96509 0.08473 0.52126 1.16168 1.20756 2.36678 2.44514 2.77241 2.84832 2.93372 3.21653 3.24921 3.27898 3.36328 3.41914 3.58004 3.66583 4.16641 4.19181 4.33812 4.56343 4.62207 4.69467 4.72983 4.75043 4.95218 5.10423 5.13557 5.18758 5.29007 5.44561 5.53743 5.59005 5.60428 5.71812 5.77648 5.80683 5.85635 6.04058 6.06128 6.09317 6.27229 6.41713 6.84406 7.17097 7.23359 7.47312 7.56135 8.31476 8.38137 9.20311 10.82569 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.001759 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.497599 B =15915.458892 C =16094.096567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.241 3.759 3 C -0.039 4.039 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.124 4.124 8 C 0.136 3.864 9 O -0.259 6.259 10 C 0.092 3.908 11 C -0.174 4.174 12 C -0.112 4.112 13 C 0.132 3.868 14 N -0.680 5.680 15 C 0.531 3.469 16 O -0.497 6.497 17 C -0.154 4.154 18 S -0.056 6.056 19 C -0.538 4.538 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.920 3.080 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C -0.084 4.084 28 C -0.118 4.118 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.410 0.590 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.270 0.730 39 H 0.153 0.847 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.493 -20.148 -1.519 34.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.075 4.075 3 C -0.043 4.043 4 C -0.080 4.080 5 C -0.139 4.139 6 C -0.096 4.096 7 C -0.143 4.143 8 C 0.090 3.910 9 O -0.171 6.171 10 C 0.050 3.950 11 C -0.193 4.193 12 C -0.133 4.133 13 C 0.037 3.963 14 N -0.327 5.327 15 C 0.319 3.681 16 O -0.369 6.369 17 C -0.304 4.304 18 S 0.171 5.829 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.104 4.104 28 C -0.137 4.137 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.245 0.755 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.170 0.830 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 24.400 -20.710 -3.380 32.182 hybrid contribution 1.101 1.349 2.454 3.009 sum 25.501 -19.361 -0.926 32.031 Atomic orbital electron populations 1.81308 1.11748 1.06333 1.06993 1.25398 0.92449 0.94868 0.94746 1.16478 0.85182 0.98918 1.03745 1.21174 0.94423 0.96303 0.96100 1.21210 0.93476 0.99339 0.99881 1.21328 1.00843 0.92695 0.94753 1.21345 0.91911 1.00608 1.00414 1.18673 0.90426 0.87708 0.94154 1.84291 1.68518 1.30152 1.34158 1.19037 0.97217 0.88686 0.90038 1.20964 1.04871 1.00832 0.92629 1.20679 1.00006 0.92882 0.99713 1.17774 0.97812 0.90013 0.90659 1.43650 1.18731 1.35395 1.34895 1.20554 0.79649 0.82155 0.85765 1.90709 1.59541 1.58689 1.27946 1.23540 1.06024 0.98956 1.01890 1.85442 1.08770 1.50582 1.38154 1.22813 1.06227 1.25525 1.14037 0.90879 1.24998 0.95236 0.97038 0.96277 1.70002 1.09192 1.40872 1.30123 0.86210 0.77784 0.80647 0.80776 1.19903 1.20775 1.19922 1.21254 0.98555 0.98793 0.91781 1.20359 0.98435 0.93792 1.01088 0.84203 0.84292 0.84301 0.83835 0.85316 0.85188 0.75470 0.88814 0.88772 0.92051 0.82964 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.76 18.54 41.84 0.78 -4.99 16 2 C 0.24 2.85 14.50 -22.48 -0.33 2.52 16 3 C -0.04 -0.33 5.28 -106.69 -0.56 -0.89 16 4 C -0.06 -0.29 9.75 -39.18 -0.38 -0.68 16 5 C -0.12 -0.36 10.02 -39.63 -0.40 -0.76 16 6 C -0.08 -0.24 10.03 -39.53 -0.40 -0.64 16 7 C -0.12 -0.66 9.98 -39.47 -0.39 -1.06 16 8 C 0.14 1.14 4.15 -38.68 -0.16 0.98 16 9 O -0.26 -2.88 9.52 -3.09 -0.03 -2.90 16 10 C 0.09 1.12 6.22 -39.20 -0.24 0.87 16 11 C -0.17 -1.88 9.06 -39.45 -0.36 -2.24 16 12 C -0.11 -1.26 9.96 -39.41 -0.39 -1.66 16 13 C 0.13 1.82 6.30 -83.62 -0.53 1.29 16 14 N -0.68 -9.27 5.34 -9.83 -0.05 -9.32 16 15 C 0.53 9.72 7.69 -10.99 -0.08 9.64 16 16 O -0.50 -10.96 13.31 5.54 0.07 -10.89 16 17 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 18 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 19 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.08 -1.24 8.69 -39.41 -0.34 -1.58 16 28 C -0.12 -1.56 9.98 -39.45 -0.39 -1.95 16 29 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 30 H 0.14 0.06 8.06 -52.48 -0.42 -0.36 16 31 H 0.14 0.07 8.06 -52.48 -0.42 -0.35 16 32 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.13 1.13 6.60 -52.49 -0.35 0.78 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.41 4.05 8.82 -40.82 -0.36 3.69 16 36 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 37 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.15 2.53 6.23 -52.49 -0.33 2.20 16 40 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -36.72 376.54 -8.56 -45.28 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.96 Total: 1.71 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -4.54 Total: -11.78 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 1.46 Total: -39.64 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.04 Total: -13.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.72 -8.56 -45.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056248623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.579 kcal (2) G-P(sol) polarization free energy of solvation -36.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds