Wall clock time and date at job start Tue Mar 31 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47388 * 2 1 4 4 C 1.50701 * 109.47377 * 120.00266 * 2 1 3 5 5 C 1.39371 * 119.50751 * 84.48905 * 4 2 1 6 6 C 1.36102 * 120.98881 * 180.02562 * 5 4 2 7 7 C 1.40539 * 119.65444 * 359.97438 * 6 5 4 8 8 C 1.40534 * 121.29048 * 180.02562 * 7 6 5 9 9 C 1.36096 * 119.65571 * 179.97438 * 8 7 6 10 10 C 1.39377 * 120.98861 * 0.02562 * 9 8 7 11 11 C 1.36092 * 120.98795 * 0.02562 * 10 9 8 12 12 C 1.40538 * 119.65489 * 359.95656 * 11 10 9 13 13 C 1.36101 * 119.50240 * 264.22805 * 4 2 1 14 14 N 1.46499 * 109.46960 * 239.99810 * 2 1 3 15 15 C 1.34774 * 120.00317 * 350.95934 * 14 2 1 16 16 O 1.21285 * 119.99642 * 5.42871 * 15 14 2 17 17 C 1.50697 * 120.00219 * 185.43544 * 15 14 2 18 18 S 1.81001 * 109.47157 * 175.01259 * 17 15 14 19 19 C 1.76202 * 100.00138 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99830 * 359.97438 * 19 18 17 21 21 C 1.38793 * 119.99950 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00444 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46897 * 89.99940 * 23 21 19 25 25 H 1.48501 * 109.47370 * 209.99582 * 23 21 19 26 26 H 1.48496 * 109.47116 * 330.00048 * 23 21 19 27 27 C 1.46508 * 119.99946 * 170.95664 * 14 2 1 28 28 C 1.53002 * 117.49961 * 12.59418 * 27 14 2 29 29 C 1.52997 * 117.49929 * 303.97091 * 27 14 2 30 30 H 1.09003 * 109.47353 * 186.42132 * 1 2 3 31 31 H 1.09002 * 109.47043 * 306.41416 * 1 2 3 32 32 H 1.08994 * 109.47320 * 66.41995 * 1 2 3 33 33 H 1.07999 * 119.51047 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.17028 * 179.97438 * 6 5 4 35 35 H 1.08002 * 120.17659 * 359.96047 * 8 7 6 36 36 H 1.07998 * 119.50842 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.50480 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.17481 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.17359 * 359.96432 * 13 4 2 40 40 H 1.09007 * 109.47267 * 55.01680 * 17 15 14 41 41 H 1.08997 * 109.47165 * 295.01229 * 17 15 14 42 42 H 0.96996 * 120.00390 * 179.97438 * 22 21 19 43 43 H 1.08995 * 115.54907 * 158.30008 * 27 14 2 44 44 H 1.09008 * 117.49484 * 359.97438 * 28 27 14 45 45 H 1.08993 * 117.49693 * 145.02123 * 28 27 14 46 46 H 1.08998 * 117.50237 * 214.98096 * 29 27 14 47 47 H 1.09008 * 117.49737 * 0.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1514 -2.0990 1.2208 6 6 2.6013 -2.7714 2.3153 7 6 2.9525 -2.0578 3.4740 8 6 3.4213 -2.7170 4.6232 9 6 3.7525 -1.9929 5.7269 10 6 3.6334 -0.6042 5.7364 11 6 3.1821 0.0679 4.6425 12 6 2.8308 -0.6458 3.4839 13 6 2.3681 0.0140 2.3326 14 7 2.0183 -0.6906 -1.1961 15 6 1.1562 -1.3593 -1.9874 16 8 -0.0351 -1.3080 -1.7656 17 6 1.6723 -2.1707 -3.1476 18 16 0.2984 -3.0598 -3.9208 19 6 1.1623 -3.9003 -5.2060 20 1 2.2289 -3.7698 -5.3147 21 6 0.4721 -4.7294 -6.0793 22 7 -0.8279 -4.8881 -5.9471 23 14 1.3879 -5.6199 -7.4422 24 1 1.8503 -6.9412 -6.9465 25 1 0.4813 -5.8159 -8.6019 26 1 2.5603 -4.8107 -7.8616 27 6 3.4438 -0.6544 -1.5323 28 6 4.4093 -0.1424 -0.4615 29 6 4.0985 0.7197 -1.6867 30 1 -0.3634 -1.0212 0.1149 31 1 -0.3633 0.6101 0.8270 32 1 -0.3633 0.4111 -0.9418 33 1 1.8826 -2.6499 0.3316 34 1 2.6880 -3.8477 2.2934 35 1 3.5181 -3.7926 4.6306 36 1 4.1129 -2.5019 6.6086 37 1 3.9026 -0.0534 6.6256 38 1 3.0946 1.1440 4.6645 39 1 2.2753 1.0900 2.3239 40 1 2.4126 -2.8864 -2.7898 41 1 2.1329 -1.5066 -3.8791 42 1 -1.3104 -5.4672 -6.5576 43 1 3.7934 -1.4547 -2.1845 44 1 3.9838 0.1679 0.4929 45 1 5.3944 -0.6059 -0.4091 46 1 4.8792 0.8235 -2.4403 47 1 3.4687 1.5969 -1.5378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056379638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:00 Heat of formation + Delta-G solvation = 56.826997 kcal Electronic energy + Delta-G solvation = -28686.154753 eV Core-core repulsion = 24926.629113 eV Total energy + Delta-G solvation = -3759.525640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.00206 -39.91291 -37.49706 -36.66592 -33.95209 -32.89012 -32.43725 -31.74556 -29.91816 -29.22792 -27.95754 -25.48661 -24.36503 -23.45396 -22.52303 -22.37560 -22.10401 -21.83613 -19.03583 -17.69759 -17.43315 -17.17668 -16.86801 -16.45453 -15.73640 -15.21405 -14.88824 -14.81391 -14.67414 -14.19071 -14.09744 -13.91751 -13.68573 -13.56616 -13.49946 -13.09533 -12.73466 -12.62989 -12.46491 -12.24676 -12.06155 -11.82134 -11.74119 -11.63141 -11.26890 -11.12612 -11.07105 -11.01453 -10.99290 -10.77144 -10.66349 -10.60980 -10.09462 -9.81328 -9.07508 -8.70669 -8.65785 -8.37486 -8.23914 -8.01962 -6.51022 -6.22726 -3.93164 0.37225 0.85284 1.89495 2.71641 2.91139 2.93117 3.21335 3.23880 3.29119 3.54644 3.79510 3.96325 4.19327 4.38793 4.53180 4.60331 4.66289 4.73747 4.77021 4.79580 4.90334 4.93077 5.02713 5.11901 5.12641 5.20735 5.27946 5.33172 5.36406 5.52672 5.54480 5.59607 5.73270 5.78459 5.81402 5.84685 5.89670 5.93393 5.97728 6.03861 6.08602 6.13348 6.20389 6.28159 6.36975 6.46415 6.53752 6.66673 6.82243 6.85831 7.52457 7.58765 8.34190 8.52451 9.22793 10.84645 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.002452 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.067782 B =11415.701135 C =11812.685079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.182 3.818 3 H 0.078 0.922 4 C -0.076 4.076 5 C -0.089 4.089 6 C -0.106 4.106 7 C -0.052 4.052 8 C -0.104 4.104 9 C -0.123 4.123 10 C -0.121 4.121 11 C -0.106 4.106 12 C -0.048 4.048 13 C -0.110 4.110 14 N -0.586 5.586 15 C 0.537 3.463 16 O -0.502 6.502 17 C -0.152 4.152 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.079 3.921 28 C -0.189 4.189 29 C -0.194 4.194 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 10.863 20.790 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.096 0.904 4 C -0.078 4.078 5 C -0.107 4.107 6 C -0.124 4.124 7 C -0.052 4.052 8 C -0.122 4.122 9 C -0.141 4.141 10 C -0.139 4.139 11 C -0.124 4.124 12 C -0.048 4.048 13 C -0.128 4.128 14 N -0.320 5.320 15 C 0.326 3.674 16 O -0.376 6.376 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.027 4.027 28 C -0.227 4.227 29 C -0.232 4.232 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.152 0.848 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.227 10.778 21.077 25.787 hybrid contribution 2.149 -0.578 -1.168 2.513 sum 12.375 10.200 19.909 25.565 Atomic orbital electron populations 1.22276 0.90978 1.03980 1.01667 1.20065 0.96432 0.94235 0.81398 0.90372 1.20008 0.97852 0.94315 0.95592 1.20728 0.97693 0.93703 0.98557 1.21040 0.99215 0.99805 0.92302 1.18112 0.99806 0.92723 0.94576 1.21054 0.98701 0.99808 0.92603 1.20820 1.00642 0.94216 0.98395 1.20815 1.00112 0.94499 0.98439 1.21003 0.99213 0.99606 0.92620 1.18002 0.99796 0.92653 0.94336 1.20754 1.00336 0.99482 0.92254 1.47438 1.06325 1.53308 1.24893 1.20289 0.86035 0.78405 0.82650 1.90777 1.15482 1.61137 1.70204 1.23622 1.06438 1.01838 0.98388 1.85353 1.07217 1.54993 1.35848 1.22843 0.96437 1.32253 1.16683 0.90986 1.24983 0.94987 0.96047 0.97540 1.70013 1.06800 1.36362 1.37101 0.86184 0.79293 0.79663 0.80464 1.20281 1.20752 1.19699 1.21712 0.80277 0.98278 1.02395 1.23471 1.00362 1.03987 0.94863 1.23380 1.03675 0.95434 1.00758 0.90140 0.94222 0.90209 0.85847 0.85493 0.85681 0.86205 0.86220 0.85769 0.85663 0.89512 0.89147 0.92192 0.84813 0.87719 0.88231 0.88063 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.55 37.16 0.28 -1.60 16 2 C 0.18 2.27 2.44 -69.08 -0.17 2.10 16 3 H 0.08 0.84 7.29 -51.93 -0.38 0.46 16 4 C -0.08 -0.90 2.85 -104.97 -0.30 -1.20 16 5 C -0.09 -1.14 9.18 -39.93 -0.37 -1.50 16 6 C -0.11 -1.23 9.77 -39.48 -0.39 -1.61 16 7 C -0.05 -0.58 5.74 -106.83 -0.61 -1.19 16 8 C -0.10 -0.98 9.77 -39.49 -0.39 -1.37 16 9 C -0.12 -1.02 9.95 -39.93 -0.40 -1.42 16 10 C -0.12 -0.98 9.95 -39.93 -0.40 -1.38 16 11 C -0.11 -0.95 9.77 -39.49 -0.39 -1.33 16 12 C -0.05 -0.51 5.74 -106.83 -0.61 -1.13 16 13 C -0.11 -1.14 8.40 -39.48 -0.33 -1.47 16 14 N -0.59 -8.13 2.04 -159.90 -0.33 -8.45 16 15 C 0.54 9.70 7.12 -10.99 -0.08 9.62 16 16 O -0.50 -10.49 11.15 5.55 0.06 -10.43 16 17 C -0.15 -3.01 4.65 36.00 0.17 -2.85 16 18 S -0.06 -1.61 20.58 -107.50 -2.21 -3.83 16 19 C -0.53 -15.00 9.50 30.94 0.29 -14.71 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.08 0.91 6.02 -67.93 -0.41 0.50 16 28 C -0.19 -1.83 9.42 -26.73 -0.25 -2.08 16 29 C -0.19 -1.86 10.11 -26.73 -0.27 -2.13 16 30 H 0.08 1.35 6.71 -51.93 -0.35 1.00 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.28 6.70 -51.93 -0.35 0.93 16 33 H 0.12 1.79 7.14 -52.49 -0.37 1.42 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 1.04 8.03 -52.49 -0.42 0.61 16 40 H 0.09 1.59 7.55 -51.91 -0.39 1.20 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.13 1.54 6.62 -51.93 -0.34 1.20 16 44 H 0.10 1.05 4.83 -51.92 -0.25 0.80 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.92 7.74 -51.92 -0.40 0.52 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -32.63 392.88 -12.16 -44.80 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.61 Total: 3.71 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -4.71 Total: -22.75 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.41 Total: -33.66 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.06 Total: -10.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.63 -12.16 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056379638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.624 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds