Wall clock time and date at job start Tue Mar 31 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99431 * 2 1 4 4 H 1.48503 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47209 * 299.99668 * 3 2 1 6 6 H 1.48497 * 109.47365 * 60.00024 * 3 2 1 7 7 C 1.37875 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00038 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99866 * 275.74104 * 10 9 7 12 12 C 1.50698 * 109.46878 * 269.99577 * 11 10 9 13 13 C 1.34517 * 125.78774 * 90.00344 * 12 11 10 14 14 C 1.41378 * 106.84096 * 180.02562 * 13 12 11 15 15 C 1.34518 * 106.84040 * 359.97438 * 14 13 12 16 16 O 1.34297 * 125.79078 * 269.69488 * 12 11 10 17 17 C 1.34776 * 119.99826 * 95.73618 * 10 9 7 18 18 O 1.21588 * 119.99787 * 185.00730 * 17 10 9 19 19 C 1.47600 * 120.00125 * 5.00895 * 17 10 9 20 20 C 1.39738 * 120.08386 * 311.64059 * 19 17 10 21 21 C 1.37705 * 119.90561 * 179.97438 * 20 19 17 22 22 C 1.38989 * 120.08915 * 0.02562 * 21 20 19 23 23 O 1.35718 * 119.91265 * 179.97438 * 22 21 20 24 24 C 1.42894 * 117.00220 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.47308 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49669 * 243.74490 * 25 24 23 27 27 C 1.52992 * 117.50158 * 175.08760 * 25 24 23 28 28 C 1.38992 * 120.17832 * 0.24945 * 22 21 20 29 29 C 1.37703 * 120.08724 * 359.49290 * 28 22 21 30 30 H 0.97001 * 120.00224 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47114 * 60.00168 * 9 7 2 32 32 H 1.09000 * 109.47138 * 299.99901 * 9 7 2 33 33 H 1.09004 * 109.47315 * 29.99813 * 11 10 9 34 34 H 1.09002 * 109.46801 * 149.99634 * 11 10 9 35 35 H 1.07995 * 126.58040 * 359.96216 * 13 12 11 36 36 H 1.08003 * 126.58485 * 179.97438 * 14 13 12 37 37 H 1.08000 * 125.78684 * 179.97438 * 15 14 13 38 38 H 1.07996 * 120.04798 * 359.95524 * 20 19 17 39 39 H 1.08007 * 119.95450 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.46848 * 299.99609 * 24 23 22 41 41 H 1.08998 * 109.47295 * 59.99432 * 24 23 22 42 42 H 1.09000 * 115.54937 * 29.40923 * 25 24 23 43 43 H 1.09001 * 117.49639 * 0.02562 * 26 25 24 44 44 H 1.09005 * 117.49370 * 145.01451 * 26 25 24 45 45 H 1.09008 * 117.50012 * 214.97793 * 27 25 24 46 46 H 1.09002 * 117.50246 * 359.97438 * 27 25 24 47 47 H 1.08004 * 119.95783 * 179.72709 * 28 22 21 48 48 H 1.08005 * 120.04436 * 180.23217 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.7757 -4.0869 -1.2619 12 6 1.8976 -5.1682 -1.8367 13 6 0.8665 -4.9790 -2.6797 14 6 0.3278 -6.2556 -2.9610 15 6 1.0623 -7.1486 -2.2735 16 8 2.0152 -6.4847 -1.5990 17 6 2.5525 -4.2006 1.1619 18 8 3.4097 -5.0628 1.1731 19 6 1.8943 -3.7979 2.4202 20 6 1.7681 -2.4441 2.7425 21 6 1.1529 -2.0725 3.9172 22 6 0.6584 -3.0419 4.7818 23 8 0.0532 -2.6717 5.9387 24 6 -0.4326 -3.7190 6.7808 25 6 -1.0786 -3.1124 8.0281 26 6 -0.4307 -3.4198 9.3797 27 6 -1.7650 -4.0695 9.0046 28 6 0.7871 -4.3897 4.4674 29 6 1.3962 -4.7694 3.2922 30 1 -0.4850 0.8400 -0.0004 31 1 0.6249 -2.5571 -0.8897 32 1 0.6242 -2.5567 0.8903 33 1 2.8392 -3.2575 -1.9664 34 1 3.7734 -4.4869 -1.0808 35 1 0.5166 -4.0334 -3.0665 36 1 -0.5122 -6.4723 -3.6043 37 1 0.9133 -8.2182 -2.2680 38 1 2.1527 -1.6903 2.0716 39 1 1.0552 -1.0264 4.1673 40 1 -1.1726 -4.3075 6.2385 41 1 0.3967 -4.3616 7.0766 42 1 -1.5218 -2.1255 7.8952 43 1 0.4560 -4.0538 9.3802 44 1 -0.4481 -2.6351 10.1361 45 1 -2.6597 -3.7121 9.5146 46 1 -1.7567 -5.1313 8.7584 47 1 0.4055 -5.1401 5.1439 48 1 1.4925 -5.8168 3.0469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058185944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:49 Heat of formation + Delta-G solvation = 0.477244 kcal Electronic energy + Delta-G solvation = -31077.004801 eV Core-core repulsion = 26872.282781 eV Total energy + Delta-G solvation = -4204.722020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18006 -40.11916 -39.13517 -37.58218 -36.29689 -35.25877 -32.90881 -32.52627 -30.93236 -30.69762 -29.40448 -27.61554 -27.37208 -25.55012 -23.23786 -22.70252 -22.50665 -22.24349 -21.34297 -20.64083 -20.30601 -18.93051 -17.99457 -17.17570 -16.81305 -16.38816 -16.20719 -16.02836 -15.69325 -15.25943 -14.99686 -14.62293 -14.49493 -14.39314 -14.09231 -13.58253 -13.33781 -13.04508 -12.74375 -12.68942 -12.47457 -12.42858 -12.31180 -12.23540 -12.04350 -11.84512 -11.64760 -11.29923 -11.24773 -11.10939 -10.95489 -10.78337 -10.75233 -10.37571 -10.21583 -10.14800 -9.85441 -9.58075 -9.24142 -8.69238 -8.49715 -8.17872 -7.91992 -7.76914 -6.26774 -4.35509 1.55291 1.82310 2.02478 2.90634 3.09643 3.17488 3.23562 3.27628 3.30763 3.52318 3.57125 3.95771 4.22960 4.33638 4.47511 4.57846 4.73031 4.97419 5.03845 5.04130 5.06717 5.22309 5.25505 5.29548 5.32780 5.35431 5.35673 5.43877 5.57462 5.73788 5.77760 5.79114 5.85745 5.93565 6.06294 6.11579 6.20650 6.28493 6.42492 6.46830 6.59738 6.65142 6.68229 6.83931 6.99134 7.18099 7.25872 7.42873 7.52593 7.64481 7.67315 7.95852 8.22384 8.69959 8.90996 9.31739 10.78822 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.007768 B = 0.003279 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3603.790128 B = 8537.224110 C =11114.453146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.071 3.929 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.230 3.770 10 N -0.587 5.587 11 C 0.196 3.804 12 C -0.015 4.015 13 C -0.201 4.201 14 C -0.216 4.216 15 C -0.053 4.053 16 O -0.168 6.168 17 C 0.565 3.435 18 O -0.562 6.562 19 C -0.160 4.160 20 C -0.027 4.027 21 C -0.158 4.158 22 C 0.142 3.858 23 O -0.312 6.312 24 C 0.090 3.910 25 C -0.155 4.155 26 C -0.177 4.177 27 C -0.171 4.171 28 C -0.229 4.229 29 C -0.036 4.036 30 H 0.267 0.733 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.196 0.804 38 H 0.176 0.824 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.124 0.876 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -8.511 8.187 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.110 3.890 10 N -0.317 5.317 11 C 0.072 3.928 12 C -0.067 4.067 13 C -0.221 4.221 14 C -0.236 4.236 15 C -0.121 4.121 16 O -0.064 6.064 17 C 0.354 3.646 18 O -0.442 6.442 19 C -0.163 4.163 20 C -0.045 4.045 21 C -0.177 4.177 22 C 0.096 3.904 23 O -0.225 6.225 24 C 0.015 3.985 25 C -0.173 4.173 26 C -0.214 4.214 27 C -0.208 4.208 28 C -0.248 4.248 29 C -0.055 4.055 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.213 0.787 38 H 0.193 0.807 39 H 0.150 0.850 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.142 0.858 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.486 -8.746 8.453 12.415 hybrid contribution -0.197 0.735 -0.242 0.798 sum -2.684 -8.011 8.211 11.781 Atomic orbital electron populations 1.69940 1.06016 1.27437 1.48163 1.24944 0.94807 0.99213 0.94400 0.86527 0.80315 0.83301 0.77976 1.19417 1.20757 1.20609 1.21494 0.93836 0.90320 1.52860 0.91560 1.19700 0.87689 0.82117 0.99458 1.48195 1.45327 1.34255 1.03932 1.19697 0.94672 0.91698 0.86729 1.23242 1.00905 0.82263 1.00297 1.21678 0.98361 0.99048 1.03029 1.21796 1.03518 0.92968 1.05288 1.23951 0.91739 0.98219 0.98240 1.84095 1.46526 1.18786 1.56954 1.18299 0.81801 0.80649 0.83824 1.90699 1.32801 1.33596 1.87150 1.19745 1.05746 0.94366 0.96455 1.22288 0.91687 0.96178 0.94348 1.20422 1.03797 0.98858 0.94626 1.19231 0.92534 0.93060 0.85552 1.85998 1.71650 1.35103 1.29790 1.22259 0.97569 0.89152 0.89512 1.22120 1.04136 1.01449 0.89599 1.23110 0.96634 1.03556 0.98087 1.22993 0.96722 0.98627 1.02492 1.20939 1.09108 0.94415 1.00322 1.20803 0.93956 0.98843 0.91940 0.92348 0.94634 0.93185 0.86757 0.89075 0.83302 0.83876 0.78724 0.80720 0.85044 0.91582 0.91937 0.86496 0.88533 0.88460 0.88232 0.88535 0.85821 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.92 13.29 55.43 0.74 -22.19 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -13.17 6.84 -34.44 -0.24 -13.41 16 8 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.23 5.28 4.66 -5.19 -0.02 5.26 16 10 N -0.59 -12.45 2.44 -177.63 -0.43 -12.88 16 11 C 0.20 3.67 5.99 -5.19 -0.03 3.64 16 12 C -0.02 -0.28 6.90 -35.62 -0.25 -0.53 16 13 C -0.20 -3.40 10.81 -39.70 -0.43 -3.83 16 14 C -0.22 -3.19 10.91 -39.70 -0.43 -3.62 16 15 C -0.05 -0.77 12.09 29.42 0.36 -0.41 16 16 O -0.17 -3.06 10.65 5.72 0.06 -3.00 16 17 C 0.57 12.38 7.23 -12.44 -0.09 12.29 16 18 O -0.56 -13.26 16.57 5.29 0.09 -13.18 16 19 C -0.16 -3.25 4.95 -104.96 -0.52 -3.77 16 20 C -0.03 -0.55 7.51 -39.22 -0.29 -0.85 16 21 C -0.16 -2.93 9.97 -39.50 -0.39 -3.33 16 22 C 0.14 2.39 6.70 -39.02 -0.26 2.12 16 23 O -0.31 -4.74 10.12 -18.86 -0.19 -4.94 16 24 C 0.09 1.03 5.02 37.16 0.19 1.21 16 25 C -0.15 -1.50 6.05 -90.62 -0.55 -2.05 16 26 C -0.18 -1.43 10.18 -26.69 -0.27 -1.70 16 27 C -0.17 -1.28 10.25 -26.70 -0.27 -1.55 16 28 C -0.23 -3.62 9.01 -39.50 -0.36 -3.98 16 29 C -0.04 -0.65 9.71 -39.22 -0.38 -1.03 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.05 1.23 5.41 -51.93 -0.28 0.94 16 33 H 0.11 1.98 8.07 -51.93 -0.42 1.56 16 34 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 35 H 0.15 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.18 3.85 4.74 -52.49 -0.25 3.60 16 39 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 40 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 41 H 0.06 0.65 7.37 -51.93 -0.38 0.27 16 42 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.12 1.57 6.28 -52.48 -0.33 1.24 16 48 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -29.48 406.19 -9.61 -39.09 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.63 Total: 10.46 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -4.34 Total: -13.86 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.30 Total: -35.07 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.04 Total: -21.11 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.48 -9.61 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058185944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.571 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds