Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48498 * 109.47332 * 89.99777 * 3 2 1 5 5 H 1.48504 * 109.47125 * 330.00156 * 3 2 1 6 6 H 1.48496 * 109.46834 * 210.00192 * 3 2 1 7 7 C 1.37875 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00332 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99406 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46549 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00038 * 263.49536 * 10 9 7 12 12 C 1.50705 * 109.46695 * 94.81146 * 11 10 9 13 13 C 1.34518 * 125.78536 * 89.71997 * 12 11 10 14 14 C 1.41387 * 106.83911 * 179.88710 * 13 12 11 15 15 C 1.34519 * 106.83851 * 0.36826 * 14 13 12 16 16 O 1.34300 * 125.79041 * 270.02108 * 12 11 10 17 17 C 1.34771 * 119.99865 * 83.50489 * 10 9 7 18 18 O 1.21559 * 119.99825 * 184.25113 * 17 10 9 19 19 C 1.47592 * 120.00415 * 4.24730 * 17 10 9 20 20 N 1.29022 * 125.86003 * 354.09147 * 19 17 10 21 21 O 1.41384 * 112.88827 * 180.31847 * 20 19 17 22 22 C 1.44201 * 107.59269 * 342.51254 * 21 20 19 23 23 H 1.09004 * 110.97561 * 267.23975 * 22 21 20 24 24 C 1.50705 * 110.97761 * 143.50225 * 22 21 20 25 25 C 1.38240 * 119.99667 * 326.17914 * 24 22 21 26 26 C 1.38228 * 119.99781 * 179.78673 * 25 24 22 27 27 C 1.38234 * 120.00450 * 0.44490 * 26 25 24 28 28 C 1.38238 * 119.99614 * 359.81148 * 27 26 25 29 29 C 1.38231 * 120.00261 * 146.45329 * 24 22 21 30 30 C 1.51690 * 125.86565 * 173.78375 * 19 17 10 31 31 H 0.97002 * 119.99378 * 0.02562 * 1 2 3 32 32 H 1.08988 * 109.47327 * 299.99810 * 9 7 2 33 33 H 1.08995 * 109.47151 * 60.00391 * 9 7 2 34 34 H 1.09003 * 109.47621 * 214.81381 * 11 10 9 35 35 H 1.09003 * 109.47416 * 334.81380 * 11 10 9 36 36 H 1.07991 * 126.58303 * 0.02562 * 13 12 11 37 37 H 1.07990 * 126.58133 * 180.11596 * 14 13 12 38 38 H 1.08003 * 125.78739 * 179.74696 * 15 14 13 39 39 H 1.07999 * 119.99967 * 359.97438 * 25 24 22 40 40 H 1.08008 * 120.00154 * 180.27383 * 26 25 24 41 41 H 1.07998 * 120.00903 * 179.83363 * 27 26 25 42 42 H 1.08001 * 120.00530 * 180.02562 * 28 27 26 43 43 H 1.08001 * 119.99866 * 359.97438 * 29 24 22 44 44 H 1.08997 * 110.79114 * 313.65053 * 30 19 17 45 45 H 1.09007 * 110.79111 * 77.12301 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 1.4467 2.6527 -0.7000 6 1 3.5467 1.4401 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.3799 -3.2178 1.2606 12 6 3.2119 -4.0064 1.7946 13 6 2.9407 -5.2947 1.5186 14 6 1.7634 -5.6264 2.2278 15 6 1.3812 -4.5186 2.8883 16 8 2.2623 -3.5406 2.6221 17 6 4.0994 -3.2549 -1.1595 18 8 4.4304 -4.4246 -1.1520 19 6 3.8066 -2.5791 -2.4385 20 7 3.3454 -1.3816 -2.5724 21 8 3.1597 -1.0118 -3.9243 22 6 3.9242 -1.9267 -4.7354 23 1 4.9200 -1.5315 -4.9362 24 6 3.2024 -2.2410 -6.0204 25 6 1.8216 -2.3037 -6.0400 26 6 1.1593 -2.5877 -7.2196 27 6 1.8780 -2.8179 -8.3777 28 6 3.2591 -2.7604 -8.3570 29 6 3.9212 -2.4721 -7.1783 30 6 4.0023 -3.1708 -3.8215 31 1 -0.4849 0.8401 -0.0004 32 1 3.8745 -0.6809 -0.8904 33 1 3.8752 -0.6797 0.8894 34 1 5.2221 -3.8879 1.0875 35 1 4.6653 -2.4554 1.9855 36 1 3.5135 -5.9505 0.8798 37 1 1.2643 -6.5841 2.2345 38 1 0.5127 -4.4305 3.5243 39 1 1.2601 -2.1279 -5.1343 40 1 0.0803 -2.6323 -7.2359 41 1 1.3608 -3.0424 -9.2988 42 1 3.8207 -2.9399 -9.2618 43 1 5.0002 -2.4270 -7.1621 44 1 4.9774 -3.6511 -3.9024 45 1 3.2029 -3.8729 -4.0586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058193273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = 58.829326 kcal Electronic energy + Delta-G solvation = -31401.974517 eV Core-core repulsion = 27161.668401 eV Total energy + Delta-G solvation = -4240.306116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98382 -40.50952 -39.28558 -38.40313 -35.50472 -33.17486 -32.56928 -32.32627 -32.30601 -30.94949 -30.36054 -28.80402 -27.86349 -26.01713 -24.05802 -23.19960 -22.64019 -22.07551 -21.14605 -21.03106 -20.07795 -18.56995 -17.31661 -17.20950 -16.89936 -16.61441 -16.19927 -15.85752 -15.58431 -14.94969 -14.87913 -14.79699 -14.48477 -14.13177 -13.79625 -13.58858 -13.41480 -13.18685 -13.12429 -12.73219 -12.63352 -12.38201 -12.27940 -12.24498 -12.15754 -12.07230 -11.68946 -11.54763 -11.17661 -11.09100 -10.92444 -10.66851 -10.26916 -10.05625 -9.79264 -9.52737 -9.36404 -9.31039 -8.98634 -8.81292 -8.54823 -8.19930 -7.90696 -6.06776 -4.05239 1.18366 1.33913 1.48292 2.18838 2.98278 3.20996 3.29209 3.37741 3.39003 3.40789 3.60296 3.64247 3.72771 4.42311 4.43616 4.55172 4.71670 4.81289 4.85604 4.95078 5.06640 5.08854 5.15690 5.25244 5.34771 5.43321 5.49282 5.52259 5.60791 5.67658 5.74933 5.78428 5.84667 5.90000 6.01361 6.25494 6.28381 6.35015 6.43076 6.45942 6.54187 6.59198 6.80175 6.90568 6.99979 7.08729 7.50546 7.52490 7.68537 7.83759 8.39129 8.52197 8.96583 9.52904 11.06333 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.009884 B = 0.003632 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.067202 B = 7707.035010 C = 9096.183856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.085 3.915 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.193 3.807 10 N -0.569 5.569 11 C 0.201 3.799 12 C -0.019 4.019 13 C -0.194 4.194 14 C -0.227 4.227 15 C -0.034 4.034 16 O -0.156 6.156 17 C 0.594 3.406 18 O -0.543 6.543 19 C 0.033 3.967 20 N -0.173 5.173 21 O -0.193 6.193 22 C 0.081 3.919 23 H 0.095 0.905 24 C -0.085 4.085 25 C -0.091 4.091 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.107 4.107 30 C -0.117 4.117 31 H 0.264 0.736 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.196 0.804 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 -7.151 -8.342 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.118 4.118 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.555 4.555 8 H 0.091 0.909 9 C 0.073 3.927 10 N -0.299 5.299 11 C 0.079 3.921 12 C -0.071 4.071 13 C -0.214 4.214 14 C -0.246 4.246 15 C -0.103 4.103 16 O -0.050 6.050 17 C 0.379 3.621 18 O -0.420 6.420 19 C -0.161 4.161 20 N 0.082 4.918 21 O -0.212 6.212 22 C 0.022 3.978 23 H 0.113 0.887 24 C -0.086 4.086 25 C -0.109 4.109 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.142 4.142 29 C -0.125 4.125 30 C -0.157 4.157 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.213 0.787 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.124 0.876 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.071 -6.255 -7.786 12.841 hybrid contribution 0.091 0.077 -0.576 0.588 sum 8.162 -6.178 -8.362 13.217 Atomic orbital electron populations 1.69888 1.06241 1.26881 1.50042 1.24703 0.94543 0.98548 0.93992 0.86961 0.81023 0.84288 0.78167 1.20446 1.21021 1.18509 1.21040 0.88118 0.94791 1.51517 0.90867 1.20445 0.97094 0.76510 0.98653 1.48051 1.61474 1.16087 1.04252 1.19766 0.90961 0.96427 0.84984 1.22702 0.93854 0.93750 0.96784 1.21592 0.99502 0.96105 1.04172 1.21737 0.99634 1.00007 1.03250 1.23941 0.95979 0.86535 1.03852 1.84102 1.30692 1.38353 1.51848 1.16859 0.77980 0.85297 0.81923 1.90737 1.49500 1.14908 1.86893 1.25754 1.00597 0.93329 0.96406 1.79295 1.04935 1.12598 0.94993 1.91400 1.68037 1.50555 1.11186 1.22440 0.95679 0.89488 0.90178 0.88700 1.19555 0.94159 1.01318 0.93539 1.21164 0.93834 0.96973 0.98902 1.21199 1.00186 0.99732 0.92658 1.21192 0.94311 0.99910 0.98226 1.21064 0.94582 1.00876 0.97716 1.20914 0.99787 0.99828 0.91956 1.22744 1.05849 0.99238 0.87824 0.92637 0.91911 0.94988 0.87571 0.88522 0.83624 0.84161 0.78749 0.85115 0.85780 0.86110 0.85961 0.85861 0.87591 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.96 55.43 0.77 -26.18 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.01 9.00 -34.44 -0.31 -14.32 16 8 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.19 4.37 3.88 -5.19 -0.02 4.35 16 10 N -0.57 -11.41 2.47 -177.65 -0.44 -11.85 16 11 C 0.20 3.44 5.90 -5.19 -0.03 3.41 16 12 C -0.02 -0.36 6.87 -35.62 -0.24 -0.61 16 13 C -0.19 -3.49 10.60 -39.70 -0.42 -3.91 16 14 C -0.23 -3.77 10.91 -39.70 -0.43 -4.20 16 15 C -0.03 -0.58 12.09 29.42 0.36 -0.22 16 16 O -0.16 -3.12 10.65 5.71 0.06 -3.06 16 17 C 0.59 11.81 7.57 -12.45 -0.09 11.72 16 18 O -0.54 -10.89 16.38 5.31 0.09 -10.80 16 19 C 0.03 0.63 7.01 -79.47 -0.56 0.07 16 20 N -0.17 -3.65 8.27 35.28 0.29 -3.36 16 21 O -0.19 -3.72 11.44 -11.37 -0.13 -3.85 16 22 C 0.08 1.18 3.99 -27.06 -0.11 1.07 16 23 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 24 C -0.08 -1.14 5.01 -104.62 -0.52 -1.66 16 25 C -0.09 -1.29 9.38 -39.58 -0.37 -1.66 16 26 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 29 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 30 C -0.12 -1.74 6.45 -26.57 -0.17 -1.91 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.06 1.45 4.40 -51.94 -0.23 1.22 16 33 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 34 H 0.11 1.56 7.64 -51.93 -0.40 1.16 16 35 H 0.10 1.45 7.79 -51.93 -0.40 1.04 16 36 H 0.15 2.52 7.98 -52.49 -0.42 2.10 16 37 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.20 2.57 8.06 -52.48 -0.42 2.15 16 39 H 0.13 2.10 7.66 -52.49 -0.40 1.69 16 40 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.10 1.54 7.89 -51.93 -0.41 1.13 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -33.61 386.85 -8.40 -42.01 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.60 Total: 6.98 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -4.60 Total: -12.18 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.63 Total: -41.40 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.02 Total: -17.72 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.61 -8.40 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.842 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds