Wall clock time and date at job start Tue Mar 31 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00026 * 2 1 4 4 H 1.48499 * 109.47433 * 239.99955 * 3 2 1 5 5 H 1.48498 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46919 * 119.99908 * 3 2 1 7 7 C 1.37877 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00182 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99744 * 263.45993 * 10 9 7 12 12 C 1.50703 * 109.46917 * 269.99754 * 11 10 9 13 13 C 1.34516 * 125.78654 * 89.99983 * 12 11 10 14 14 C 1.41384 * 106.83772 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.84030 * 0.02562 * 14 13 12 16 16 O 1.34299 * 125.78940 * 269.69638 * 12 11 10 17 17 C 1.34774 * 120.00041 * 83.45791 * 10 9 7 18 18 O 1.21554 * 119.99623 * 183.78719 * 17 10 9 19 19 C 1.47599 * 120.00060 * 3.78989 * 17 10 9 20 20 N 1.29011 * 125.86065 * 353.75065 * 19 17 10 21 21 O 1.41387 * 112.88741 * 179.70569 * 20 19 17 22 22 C 1.44205 * 107.59153 * 17.49079 * 21 20 19 23 23 H 1.08999 * 110.97978 * 92.75739 * 22 21 20 24 24 C 1.50703 * 110.97840 * 216.49964 * 22 21 20 25 25 C 1.38227 * 120.00179 * 215.49546 * 24 22 21 26 26 C 1.38235 * 120.00356 * 180.27295 * 25 24 22 27 27 C 1.38243 * 119.99635 * 359.47111 * 26 25 24 28 28 C 1.38234 * 119.99877 * 0.55300 * 27 26 25 29 29 C 1.38237 * 119.99984 * 359.69696 * 28 27 26 30 30 C 1.51747 * 125.84776 * 173.81844 * 19 17 10 31 31 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47281 * 60.00262 * 9 7 2 33 33 H 1.09004 * 109.46901 * 299.99893 * 9 7 2 34 34 H 1.09001 * 109.47277 * 29.99816 * 11 10 9 35 35 H 1.08992 * 109.46867 * 150.00029 * 11 10 9 36 36 H 1.07997 * 126.58412 * 0.03971 * 13 12 11 37 37 H 1.07998 * 126.57995 * 179.97438 * 14 13 12 38 38 H 1.07998 * 125.78485 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.00054 * 359.97438 * 25 24 22 40 40 H 1.08003 * 120.00646 * 179.72102 * 26 25 24 41 41 H 1.07999 * 119.99983 * 180.28037 * 27 26 25 42 42 H 1.07999 * 120.00244 * 179.72834 * 28 27 26 43 43 H 1.07998 * 120.00493 * 180.02562 * 29 28 27 44 44 H 1.09004 * 110.83016 * 46.33746 * 30 19 17 45 45 H 1.09005 * 110.78444 * 282.85100 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.5692 -4.2634 -1.2611 12 6 1.6218 -5.4038 -1.5314 13 6 0.4659 -5.3211 -2.2145 14 6 -0.0962 -6.6184 -2.2268 15 6 0.7496 -7.4160 -1.5500 16 8 1.7911 -6.6761 -1.1361 17 6 2.7420 -4.0385 1.1590 18 8 3.5832 -4.9160 1.1522 19 6 2.3108 -3.4395 2.4372 20 7 1.5166 -2.4314 2.5696 21 8 1.2830 -2.0893 3.9213 22 6 2.3194 -2.7054 4.7123 23 1 3.1575 -2.0236 4.8568 24 6 1.7780 -3.1785 6.0368 25 6 2.5655 -3.1073 7.1706 26 6 2.0710 -3.5465 8.3844 27 6 0.7849 -4.0468 8.4665 28 6 -0.0025 -4.1185 7.3326 29 6 0.4939 -3.6841 6.1178 30 6 2.7269 -3.9029 3.8210 31 1 -0.4849 0.8400 0.0004 32 1 0.6241 -2.5568 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 2.5086 -3.5401 -2.0743 35 1 3.5873 -4.6459 -1.1901 36 1 0.0480 -4.4343 -2.6675 37 1 -1.0265 -6.9123 -2.6899 38 1 0.6162 -8.4731 -1.3740 39 1 3.5690 -2.7130 7.1072 40 1 2.6879 -3.4950 9.2695 41 1 0.3969 -4.3857 9.4157 42 1 -1.0057 -4.5134 7.3959 43 1 -0.1213 -3.7397 5.2319 44 1 3.8030 -4.0705 3.8663 45 1 2.1817 -4.8021 4.1080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058193274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:09 Heat of formation + Delta-G solvation = 52.003526 kcal Electronic energy + Delta-G solvation = -31087.913810 eV Core-core repulsion = 26847.311705 eV Total energy + Delta-G solvation = -4240.602105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25297 -40.41901 -39.21231 -38.33057 -35.41421 -33.13020 -32.67416 -32.52684 -32.25892 -30.96861 -30.33694 -28.74716 -27.33341 -25.99049 -24.01496 -23.38541 -22.65466 -22.22210 -21.40585 -21.00069 -20.23414 -18.50214 -17.25770 -17.17272 -16.89651 -16.38907 -16.21239 -15.78400 -15.62970 -15.03885 -14.86173 -14.71471 -14.47822 -14.35880 -14.02818 -13.46946 -13.43977 -13.19782 -12.86365 -12.74124 -12.57654 -12.52382 -12.47957 -12.22367 -12.17396 -11.77883 -11.55718 -11.38068 -11.17391 -11.08340 -10.93836 -10.82364 -10.27087 -9.91591 -9.80264 -9.64835 -9.59824 -9.22852 -9.00002 -8.80114 -8.45427 -8.25786 -8.00205 -6.09076 -4.13819 1.18433 1.32363 1.60596 1.94370 2.82267 3.23030 3.25060 3.29732 3.34788 3.36804 3.64869 3.70041 3.72957 4.38222 4.52653 4.64129 4.78599 4.84730 4.91475 4.95098 5.01019 5.06304 5.14728 5.27434 5.28704 5.30355 5.42211 5.50564 5.58719 5.71779 5.80993 5.84781 5.92368 5.96010 6.03820 6.05189 6.21651 6.34681 6.34782 6.42433 6.52201 6.54323 6.76686 6.88905 7.28441 7.37832 7.46073 7.64889 7.80191 8.03211 8.10266 8.57934 8.88089 9.50943 10.99081 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.007455 B = 0.003907 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.954572 B = 7165.206502 C = 9765.666740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.226 3.774 10 N -0.572 5.572 11 C 0.196 3.804 12 C -0.021 4.021 13 C -0.197 4.197 14 C -0.216 4.216 15 C -0.050 4.050 16 O -0.168 6.168 17 C 0.589 3.411 18 O -0.549 6.549 19 C 0.023 3.977 20 N -0.156 5.156 21 O -0.194 6.194 22 C 0.080 3.920 23 H 0.096 0.904 24 C -0.081 4.081 25 C -0.106 4.106 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.093 4.093 30 C -0.117 4.117 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.197 0.803 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.443 -10.787 8.238 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.107 3.893 10 N -0.302 5.302 11 C 0.072 3.928 12 C -0.072 4.072 13 C -0.217 4.217 14 C -0.236 4.236 15 C -0.118 4.118 16 O -0.063 6.063 17 C 0.375 3.625 18 O -0.426 6.426 19 C -0.171 4.171 20 N 0.099 4.901 21 O -0.214 6.214 22 C 0.021 3.979 23 H 0.114 0.886 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.139 4.139 29 C -0.111 4.111 30 C -0.156 4.156 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.214 0.786 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.124 0.876 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.196 -10.338 7.955 13.099 hybrid contribution 0.536 0.530 0.394 0.851 sum 1.732 -9.808 8.348 12.996 Atomic orbital electron populations 1.69900 1.05900 1.27170 1.48947 1.24782 0.94705 0.98776 0.94497 0.86653 0.79638 0.83108 0.78573 1.20294 1.21158 1.20274 1.21186 0.92981 0.90121 1.52553 0.92580 1.20011 0.87572 0.81778 0.99954 1.48325 1.44187 1.33556 1.04145 1.19794 0.96141 0.89010 0.87825 1.23111 0.99435 0.83883 1.00801 1.21700 0.96092 0.98760 1.05127 1.21808 1.02245 0.93761 1.05752 1.23978 0.88132 0.97615 1.02094 1.84090 1.41411 1.19103 1.61697 1.16945 0.81706 0.81680 0.82167 1.90744 1.33042 1.32062 1.86794 1.25797 0.99853 0.95186 0.96253 1.79542 1.08651 1.07581 0.94309 1.91394 1.47338 1.70312 1.12322 1.22470 0.91970 0.93532 0.89894 0.88623 1.19595 0.95199 0.99899 0.93544 1.20956 0.99754 0.99746 0.91947 1.21081 0.96000 0.99600 0.97420 1.21181 0.94470 0.99674 0.98425 1.21167 0.99973 1.00135 0.92618 1.21087 0.94995 0.96654 0.98364 1.22770 1.04993 0.99652 0.88224 0.92594 0.94292 0.91451 0.86461 0.88697 0.83208 0.83770 0.78608 0.85768 0.85932 0.86129 0.85884 0.85451 0.87592 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 13.29 55.43 0.74 -23.81 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -13.69 8.39 -34.44 -0.29 -13.98 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.23 5.36 4.77 -5.19 -0.02 5.34 16 10 N -0.57 -11.96 2.46 -177.64 -0.44 -12.40 16 11 C 0.20 3.49 5.94 -5.19 -0.03 3.46 16 12 C -0.02 -0.36 6.90 -35.62 -0.25 -0.61 16 13 C -0.20 -3.18 10.81 -39.70 -0.43 -3.61 16 14 C -0.22 -3.04 10.91 -39.70 -0.43 -3.47 16 15 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 16 O -0.17 -2.89 10.65 5.73 0.06 -2.83 16 17 C 0.59 12.41 7.61 -12.44 -0.09 12.31 16 18 O -0.55 -11.92 16.52 5.32 0.09 -11.83 16 19 C 0.02 0.46 7.00 -79.44 -0.56 -0.10 16 20 N -0.16 -3.42 8.25 35.29 0.29 -3.13 16 21 O -0.19 -3.90 11.50 -11.37 -0.13 -4.03 16 22 C 0.08 1.25 4.00 -26.97 -0.11 1.14 16 23 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 24 C -0.08 -1.11 5.01 -104.62 -0.52 -1.63 16 25 C -0.11 -1.20 9.69 -39.59 -0.38 -1.59 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 28 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 29 C -0.09 -1.25 9.31 -39.58 -0.37 -1.62 16 30 C -0.12 -1.83 6.44 -26.45 -0.17 -2.00 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 0.96 8.02 -51.93 -0.42 0.54 16 33 H 0.07 1.74 5.38 -51.93 -0.28 1.46 16 34 H 0.12 1.91 8.07 -51.93 -0.42 1.49 16 35 H 0.09 1.64 7.37 -51.93 -0.38 1.26 16 36 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.20 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 1.83 7.70 -52.49 -0.40 1.42 16 44 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.10 1.46 7.85 -51.93 -0.41 1.05 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -31.57 391.14 -8.77 -40.33 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.66 Total: 5.51 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.59 Total: -9.71 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.59 Total: -39.33 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.02 Total: -18.68 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.57 -8.77 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.338 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds