Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 119.99838 * 2 1 4 4 C 1.38216 * 120.00159 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99868 * 0.02746 * 4 3 2 6 6 S 1.76204 * 120.00185 * 180.02562 * 5 4 3 7 7 O 1.42100 * 106.40144 * 203.53601 * 6 5 4 8 8 O 1.42098 * 106.39862 * 336.45207 * 6 5 4 9 9 N 1.65599 * 107.22076 * 89.99272 * 6 5 4 10 10 C 1.46963 * 120.59410 * 269.72249 * 9 6 5 11 11 C 1.53819 * 108.39762 * 124.75778 * 10 9 6 12 12 N 1.46968 * 108.57974 * 49.63553 * 11 10 9 13 13 C 1.36931 * 120.59197 * 124.66357 * 12 11 10 14 14 H 1.07997 * 120.00588 * 332.00654 * 13 12 11 15 15 C 1.38821 * 119.99650 * 151.99948 * 13 12 11 16 16 N 1.31617 * 119.99915 * 159.43380 * 15 13 12 17 17 Si 1.86798 * 120.00025 * 339.43031 * 15 13 12 18 18 H 1.48499 * 109.46985 * 87.38934 * 17 15 13 19 19 H 1.48501 * 109.47293 * 207.38897 * 17 15 13 20 20 H 1.48504 * 109.47366 * 327.39324 * 17 15 13 21 21 C 1.46966 * 118.81213 * 304.65289 * 12 11 10 22 22 C 1.46968 * 120.59214 * 90.00049 * 9 6 5 23 23 C 1.38214 * 120.00240 * 359.96872 * 5 4 3 24 24 C 1.38212 * 120.00415 * 180.02562 * 2 1 3 25 25 N 1.48019 * 119.99796 * 359.97438 * 24 2 1 26 26 O 1.21805 * 120.00237 * 173.81845 * 25 24 2 27 27 O 1.21804 * 120.00035 * 353.82700 * 25 24 2 28 28 H 1.09004 * 109.47040 * 263.20793 * 1 2 3 29 29 H 1.09000 * 109.47675 * 23.20691 * 1 2 3 30 30 H 1.09005 * 109.47111 * 143.21040 * 1 2 3 31 31 H 1.08003 * 120.00340 * 0.06093 * 3 2 1 32 32 H 1.07999 * 120.00143 * 180.29511 * 4 3 2 33 33 H 1.08998 * 109.61005 * 244.53738 * 10 9 6 34 34 H 1.09001 * 109.61246 * 5.05377 * 10 9 6 35 35 H 1.08999 * 109.73800 * 289.85073 * 11 10 9 36 36 H 1.08996 * 109.52916 * 169.30448 * 11 10 9 37 37 H 0.97001 * 119.99893 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.60681 * 295.47882 * 21 12 11 39 39 H 1.08998 * 109.74829 * 175.05514 * 21 12 11 40 40 H 1.08998 * 109.60913 * 354.94644 * 22 9 6 41 41 H 1.08995 * 109.60610 * 115.45780 * 22 9 6 42 42 H 1.07994 * 120.00326 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 16 6.0337 0.0001 -0.0016 7 8 6.4350 -1.2491 -0.5472 8 8 6.4349 1.2503 -0.5451 9 7 6.5240 -0.0011 1.5801 10 6 6.7513 1.2633 2.2937 11 6 5.8911 1.2625 3.5689 12 7 6.1125 -0.0032 4.2823 13 6 6.5180 -0.0042 5.5902 14 1 7.0973 0.8213 5.9767 15 6 6.1844 -1.0664 6.4194 16 7 6.8769 -1.2874 7.5167 17 14 4.7526 -2.1819 5.9780 18 1 5.2307 -3.2743 5.0930 19 1 4.1785 -2.7645 7.2175 20 1 3.7102 -1.3939 5.2726 21 6 5.8907 -1.2677 3.5669 22 6 6.7454 -1.2668 2.2935 23 6 3.5807 -1.1969 -0.0016 24 6 2.1981 -1.1969 -0.0005 25 7 1.4580 -2.4788 -0.0005 26 8 2.0617 -3.5306 -0.1146 27 8 0.2453 -2.4819 0.1134 28 1 -0.3633 -0.1215 1.0205 29 1 -0.3634 0.9445 -0.4049 30 1 -0.3633 -0.8230 -0.6155 31 1 1.6582 2.1327 0.0010 32 1 4.1203 2.1327 0.0043 33 1 7.8048 1.3489 2.5600 34 1 6.4632 2.0998 1.6569 35 1 4.8380 1.3529 3.3027 36 1 6.1830 2.0974 4.2059 37 1 6.6435 -2.0294 8.0963 38 1 4.8375 -1.3574 3.3006 39 1 6.1802 -2.1054 4.2013 40 1 6.4535 -2.1017 1.6565 41 1 7.7985 -1.3572 2.5597 42 1 4.1207 -2.1321 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058210191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -1.949089 kcal Electronic energy + Delta-G solvation = -30872.713810 eV Core-core repulsion = 26563.957090 eV Total energy + Delta-G solvation = -4308.756720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.108 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.51167 -39.93806 -38.10981 -37.51027 -36.90662 -36.05938 -34.10381 -33.73845 -32.40508 -31.51421 -30.91226 -28.44521 -26.79643 -26.48482 -23.76375 -23.28344 -23.10447 -22.75986 -20.70727 -19.93254 -18.94372 -18.67400 -17.87009 -17.78434 -17.33435 -16.59955 -16.44449 -15.98561 -15.65315 -15.29756 -14.72057 -14.46670 -14.43825 -14.40523 -14.09831 -13.62124 -13.26860 -13.10812 -12.92934 -12.88914 -12.75283 -12.56066 -12.44058 -12.24075 -11.96292 -11.81888 -11.64040 -11.46748 -11.33298 -11.25844 -11.05818 -10.93186 -10.54963 -10.45653 -10.20281 -10.03771 -9.84848 -9.65229 -9.28742 -8.63802 -7.13314 -6.09308 -3.47283 -0.50752 -0.01649 0.24300 0.97754 1.10360 2.47417 2.84979 3.18318 3.36933 3.38906 3.50649 3.75009 3.86506 4.02549 4.22782 4.38093 4.41238 4.60038 4.67017 4.83539 4.85266 4.92490 5.07872 5.11887 5.21360 5.25644 5.37353 5.44386 5.53241 5.58529 5.69731 5.72115 5.76319 5.83569 6.06685 6.13957 6.20464 6.33700 6.34548 6.58689 6.70636 7.41977 7.77811 8.18199 8.76117 9.55560 9.91197 11.06330 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.004808 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.458395 B = 5822.815842 C = 7277.576148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 C -0.142 4.142 4 C 0.034 3.966 5 C -0.685 4.685 6 S 2.689 3.311 7 O -0.949 6.949 8 O -0.950 6.950 9 N -0.983 5.983 10 C 0.101 3.899 11 C 0.134 3.866 12 N -0.600 5.600 13 C -0.266 4.266 14 H 0.089 0.911 15 C 0.028 3.972 16 N -0.902 5.902 17 Si 0.878 3.122 18 H -0.283 1.283 19 H -0.300 1.300 20 H -0.276 1.276 21 C 0.108 3.892 22 C 0.102 3.898 23 C 0.052 3.948 24 C -0.070 4.070 25 N 0.033 4.967 26 O -0.157 6.157 27 O -0.156 6.156 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.078 0.922 37 H 0.265 0.735 38 H 0.024 0.976 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 6.228 -16.829 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 C -0.161 4.161 4 C 0.015 3.985 5 C -0.769 4.769 6 S 2.776 3.224 7 O -0.939 6.939 8 O -0.940 6.940 9 N -0.823 5.823 10 C -0.026 4.026 11 C 0.006 3.994 12 N -0.324 5.324 13 C -0.394 4.394 14 H 0.106 0.894 15 C -0.171 4.171 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.211 1.211 19 H -0.228 1.228 20 H -0.202 1.202 21 C -0.019 4.019 22 C -0.024 4.024 23 C 0.032 3.968 24 C -0.155 4.155 25 N 0.551 4.449 26 O -0.372 6.372 27 O -0.370 6.370 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.172 6.749 -17.371 20.349 hybrid contribution -1.783 -1.088 0.273 2.106 sum -9.955 5.661 -17.098 20.578 Atomic orbital electron populations 1.21462 0.87912 1.05020 1.05287 1.20207 0.98441 0.90615 0.87678 1.21306 0.94118 0.97519 1.03157 1.21383 0.94726 0.97423 0.84942 1.31584 1.29543 0.97842 1.17905 1.02334 0.73101 0.73821 0.73112 1.93598 1.80176 1.43676 1.76442 1.93579 1.80195 1.43689 1.76576 1.57453 1.80740 1.13737 1.30365 1.22273 1.02416 0.82865 0.95033 1.21406 0.95669 0.90302 0.92009 1.44193 1.79387 0.99008 1.09778 1.18907 1.28182 1.08284 0.83995 0.89377 1.25280 0.98175 0.98140 0.95537 1.69818 1.38928 1.30698 1.14966 0.87103 0.84899 0.80674 0.76487 1.21089 1.22804 1.20151 1.21806 0.96049 0.91345 0.92700 1.22195 1.02663 0.82804 0.94762 1.20756 0.91468 0.99439 0.85175 1.21020 0.92519 0.83927 1.17990 1.43447 1.01101 1.02573 0.97788 1.94591 1.70053 1.19504 1.53071 1.94460 0.96058 1.93651 1.52866 0.88434 0.90194 0.87856 0.82534 0.82228 0.90052 0.89810 0.95762 0.90332 0.92520 0.95777 0.89254 0.89868 0.89673 0.81426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.69 36.00 0.31 -0.77 16 2 C 0.03 0.32 5.88 -104.63 -0.62 -0.29 16 3 C -0.14 -1.16 9.68 -39.58 -0.38 -1.55 16 4 C 0.03 0.32 9.52 -39.58 -0.38 -0.05 16 5 C -0.69 -8.15 5.97 -39.58 -0.24 -8.39 16 6 S 2.69 36.10 5.70 -107.50 -0.61 35.49 16 7 O -0.95 -14.73 15.98 -57.17 -0.91 -15.64 16 8 O -0.95 -13.46 15.97 -57.17 -0.91 -14.38 16 9 N -0.98 -14.24 3.26 -113.00 -0.37 -14.61 16 10 C 0.10 1.40 6.58 -3.36 -0.02 1.37 16 11 C 0.13 2.24 6.69 -3.36 -0.02 2.22 16 12 N -0.60 -12.89 2.73 -171.76 -0.47 -13.36 16 13 C -0.27 -6.88 10.03 -15.06 -0.15 -7.03 16 14 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 15 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 16 N -0.90 -26.44 13.97 55.49 0.78 -25.66 16 17 Si 0.88 21.45 24.41 -169.99 -4.15 17.31 16 18 H -0.28 -6.58 6.37 56.52 0.36 -6.22 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.28 -6.72 7.00 56.52 0.40 -6.32 16 21 C 0.11 2.16 4.37 -3.60 -0.02 2.14 16 22 C 0.10 1.65 6.55 -3.60 -0.02 1.63 16 23 C 0.05 0.66 9.03 -39.58 -0.36 0.31 16 24 C -0.07 -0.89 6.83 -79.95 -0.55 -1.44 16 25 N 0.03 0.47 4.45 33.96 0.15 0.62 16 26 O -0.16 -2.41 18.47 -29.46 -0.54 -2.96 16 27 O -0.16 -2.12 15.36 -29.46 -0.45 -2.57 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.40 8.04 -51.93 -0.42 -0.02 16 30 H 0.10 0.88 5.85 -51.93 -0.30 0.57 16 31 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.16 1.13 7.62 -52.49 -0.40 0.73 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.92 7.08 -51.93 -0.37 0.56 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 38 H 0.02 0.48 7.39 -51.93 -0.38 0.09 16 39 H 0.09 1.96 4.29 -51.93 -0.22 1.74 16 40 H 0.08 1.18 7.09 -51.93 -0.37 0.82 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.17 2.10 7.18 -52.49 -0.38 1.72 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -33.22 355.27 -9.64 -42.86 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.97 Total: -1.28 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.53 Total: -11.17 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.09 Total: -53.01 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -2.82 Total: -35.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.31 kcal Atomic # 16 Polarization: 36.10 SS G_CDS: -0.61 Total: 35.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.22 -9.64 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058210191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.908 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds