Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39753 * 125.84243 * 2 1 4 4 C 1.36105 * 107.83131 * 180.16378 * 3 2 1 5 5 N 1.39476 * 126.22088 * 179.84136 * 4 3 2 6 6 C 1.34779 * 119.99597 * 359.69322 * 5 4 3 7 7 O 1.21293 * 119.99786 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99603 * 179.72086 * 6 5 4 9 9 H 1.08993 * 109.47146 * 305.27425 * 8 6 5 10 10 C 1.53000 * 109.47135 * 65.27995 * 8 6 5 11 11 O 1.42904 * 109.46829 * 185.27598 * 8 6 5 12 12 C 1.35709 * 116.99847 * 155.13964 * 11 8 6 13 13 C 1.38640 * 120.14737 * 5.41391 * 12 11 8 14 14 C 1.38107 * 120.08896 * 179.69827 * 13 12 11 15 15 C 1.38516 * 120.39133 * 0.60551 * 14 13 12 16 16 C 1.37824 * 120.29619 * 359.67881 * 15 14 13 17 17 C 1.39716 * 119.89932 * 0.02562 * 16 15 14 18 18 C 1.43197 * 120.19050 * 179.97438 * 17 16 15 19 19 N 8.40134 * 104.48047 * 2.50487 * 2 1 3 20 20 N 1.35268 * 107.56496 * 359.58525 * 4 3 2 21 21 C 1.46494 * 126.04785 * 180.24475 * 20 4 3 22 22 C 1.50697 * 109.47527 * 89.99494 * 21 20 4 23 23 H 1.08000 * 119.99857 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00263 * 180.02562 * 22 21 20 25 25 N 1.31517 * 120.00115 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00041 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47443 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47491 * 120.00123 * 26 24 22 29 29 H 1.48502 * 109.47375 * 240.00041 * 26 24 22 30 30 N 1.30853 * 125.83463 * 179.69528 * 2 1 3 31 31 H 1.09000 * 109.47190 * 270.28095 * 1 2 3 32 32 H 1.09008 * 109.46782 * 30.27582 * 1 2 3 33 33 H 1.08998 * 109.47226 * 150.28024 * 1 2 3 34 34 H 1.07996 * 126.08384 * 0.02562 * 3 2 1 35 35 H 0.96999 * 120.00095 * 179.68987 * 5 4 3 36 36 H 1.09002 * 109.46507 * 299.99699 * 10 8 6 37 37 H 1.08997 * 109.47047 * 59.99180 * 10 8 6 38 38 H 1.09000 * 109.46896 * 180.02562 * 10 8 6 39 39 H 1.07999 * 119.95535 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.80607 * 180.30225 * 14 13 12 41 41 H 1.08001 * 119.85116 * 179.69284 * 15 14 13 42 42 H 1.07994 * 120.04896 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47322 * 209.99902 * 21 20 4 44 44 H 1.09003 * 109.47049 * 329.99763 * 21 20 4 45 45 H 0.96995 * 119.99800 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1329 0.0000 4 6 3.6197 0.7120 -0.0037 5 7 4.7514 1.5273 -0.0081 6 6 4.6158 2.8682 -0.0152 7 8 3.5097 3.3659 -0.0173 8 6 5.8386 3.7491 -0.0135 9 1 6.4762 3.4840 0.8297 10 6 6.6113 3.5515 -1.3192 11 8 5.4402 5.1166 0.1018 12 6 6.3457 5.9798 0.6280 13 6 7.6299 5.5481 0.9221 14 6 8.5523 6.4290 1.4517 15 6 8.1998 7.7445 1.7048 16 6 6.9258 8.1893 1.4241 17 6 5.9848 7.3101 0.8823 18 6 4.6592 7.7654 0.5888 19 7 3.6078 8.1267 0.3555 20 7 3.6092 -0.6406 0.0034 21 6 4.7869 -1.5118 0.0076 22 6 5.1913 -1.8030 1.4298 23 1 4.6277 -1.3810 2.2487 24 6 6.2815 -2.6074 1.6856 25 7 6.9688 -3.1202 0.6885 26 14 6.7823 -2.9690 3.4485 27 1 5.8538 -2.2776 4.3787 28 1 6.7252 -4.4333 3.6890 29 1 8.1664 -2.4831 3.6796 30 7 2.2731 -1.0608 0.0056 31 1 -0.3633 0.0050 1.0276 32 1 -0.3633 0.8876 -0.5182 33 1 -0.3633 -0.8925 -0.5095 34 1 1.9903 2.1596 0.0004 35 1 5.6359 1.1292 -0.0060 36 1 6.9151 2.5083 -1.4072 37 1 5.9735 3.8165 -2.1625 38 1 7.4959 4.1883 -1.3178 39 1 7.9110 4.5228 0.7317 40 1 9.5529 6.0891 1.6745 41 1 8.9265 8.4247 2.1237 42 1 6.6554 9.2158 1.6226 43 1 4.5496 -2.4461 -0.5012 44 1 5.6082 -1.0151 -0.5091 45 1 7.7355 -3.6864 0.8685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = 66.176264 kcal Electronic energy + Delta-G solvation = -30273.516506 eV Core-core repulsion = 26065.821728 eV Total energy + Delta-G solvation = -4207.694778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28530 -40.69789 -39.32729 -37.81606 -36.45837 -34.90563 -33.86618 -32.73652 -32.08385 -31.50503 -30.33061 -29.18636 -28.24035 -26.09970 -25.21366 -24.30360 -23.27206 -22.75637 -21.22687 -19.91743 -19.83852 -19.22920 -18.04582 -17.30837 -16.87137 -16.42337 -16.17701 -16.10393 -15.51063 -15.19234 -14.99801 -14.83310 -14.58001 -14.16802 -14.09783 -13.72767 -13.54977 -13.33525 -13.02917 -12.89723 -12.81846 -12.73762 -12.65485 -12.54099 -12.22922 -12.10748 -11.98906 -11.82021 -11.63630 -11.55132 -11.37779 -11.11894 -10.96779 -10.49013 -10.40449 -9.97628 -9.85154 -9.57682 -9.45683 -8.79220 -8.70645 -7.98811 -7.52581 -6.40204 -4.48842 0.41422 0.89058 2.07647 2.09109 2.60105 2.72715 2.95936 3.05547 3.09539 3.19402 3.25469 3.51867 3.55046 3.67404 3.69818 4.16863 4.20490 4.34598 4.43327 4.48285 4.52800 4.70130 4.85926 4.93198 4.97989 5.21883 5.24126 5.31415 5.31626 5.58123 5.68681 5.72810 5.78252 5.96148 6.02231 6.07841 6.10574 6.15478 6.21041 6.33716 6.58838 6.75759 6.80008 6.97971 7.40445 7.42870 7.49406 7.54882 7.72603 7.80776 8.14430 8.55192 8.64374 9.19217 10.66839 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003005 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.442647 B = 9314.325875 C =11577.110336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.633 5.633 6 C 0.522 3.478 7 O -0.487 6.487 8 C 0.072 3.928 9 H 0.110 0.890 10 C -0.180 4.180 11 O -0.277 6.277 12 C 0.180 3.820 13 C -0.214 4.214 14 C -0.047 4.047 15 C -0.160 4.160 16 C -0.033 4.033 17 C -0.059 4.059 18 C 0.258 3.742 19 N -0.411 5.411 20 N -0.343 5.343 21 C 0.256 3.744 22 C -0.541 4.541 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 N -0.282 5.282 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.417 0.583 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 18.498 -0.763 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.282 5.282 6 C 0.306 3.694 7 O -0.359 6.359 8 C 0.012 3.988 9 H 0.128 0.872 10 C -0.237 4.237 11 O -0.188 6.188 12 C 0.130 3.870 13 C -0.232 4.232 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.053 4.053 17 C -0.063 4.063 18 C -0.057 4.057 19 N -0.087 5.087 20 N -0.128 5.128 21 C 0.138 3.862 22 C -0.579 4.579 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.732 3.268 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.206 1.206 30 N -0.108 5.108 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.254 0.746 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.095 18.003 -1.256 18.752 hybrid contribution 1.656 -0.130 1.094 1.989 sum 6.751 17.873 -0.162 19.106 Atomic orbital electron populations 1.20032 0.87497 1.02403 1.02235 1.22035 0.96576 0.90948 1.01717 1.21291 0.89098 1.00547 1.21530 1.17814 0.87644 0.83341 1.03344 1.42497 1.08593 1.04885 1.72191 1.19836 0.90458 0.81545 0.77576 1.90715 1.26061 1.73412 1.45666 1.22201 0.94693 0.80318 1.01597 0.87220 1.22405 1.00929 1.04392 0.96019 1.86206 1.39423 1.17135 1.76041 1.18998 0.88481 0.88574 0.90917 1.21344 0.92621 1.01997 1.07249 1.21226 0.99198 0.92842 0.93280 1.21022 0.96392 0.96492 1.03910 1.21051 0.91877 0.98753 0.93631 1.15308 0.88556 0.91742 1.10737 1.25289 0.92551 0.93905 0.93958 1.81228 1.10781 1.08133 1.08521 1.49366 1.06611 1.02011 1.54849 1.19637 0.77771 0.89816 0.98957 1.21387 1.13245 1.31963 0.91341 0.91617 1.24935 0.95695 0.94822 0.98211 1.69923 1.19143 1.32544 1.31087 0.86311 0.78322 0.78545 0.83616 1.19536 1.20487 1.20609 1.77375 0.86048 1.21709 1.25628 0.91248 0.91096 0.91478 0.82166 0.74612 0.89426 0.90184 0.90016 0.83911 0.84702 0.84693 0.84257 0.92457 0.93829 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.58 16 2 C 0.05 1.05 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.04 9.58 -39.78 -0.38 -6.42 16 4 C 0.30 6.20 7.66 -153.15 -1.17 5.02 16 5 N -0.63 -10.41 5.38 -11.46 -0.06 -10.47 16 6 C 0.52 8.06 7.14 -10.99 -0.08 7.98 16 7 O -0.49 -9.36 13.64 -14.31 -0.20 -9.55 16 8 C 0.07 0.78 2.64 -27.88 -0.07 0.71 16 9 H 0.11 0.91 6.32 -51.93 -0.33 0.58 16 10 C -0.18 -1.48 9.13 37.16 0.34 -1.14 16 11 O -0.28 -3.49 8.77 -38.69 -0.34 -3.83 16 12 C 0.18 1.79 6.60 -38.71 -0.26 1.53 16 13 C -0.21 -1.50 8.23 -39.48 -0.33 -1.83 16 14 C -0.05 -0.25 10.03 -39.53 -0.40 -0.64 16 15 C -0.16 -0.80 10.02 -39.63 -0.40 -1.19 16 16 C -0.03 -0.21 9.76 -39.18 -0.38 -0.59 16 17 C -0.06 -0.58 5.75 -106.70 -0.61 -1.19 16 18 C 0.26 3.34 14.87 -22.47 -0.33 3.00 16 19 N -0.41 -6.36 18.54 41.84 0.78 -5.59 16 20 N -0.34 -7.84 3.60 -61.57 -0.22 -8.07 16 21 C 0.26 6.16 6.01 -5.20 -0.03 6.13 16 22 C -0.54 -14.05 9.39 -34.44 -0.32 -14.37 16 23 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 24 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -23.41 13.29 55.43 0.74 -22.68 16 26 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 30 N -0.28 -6.50 12.56 33.65 0.42 -6.08 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.16 3.29 5.83 -52.49 -0.31 2.99 16 35 H 0.42 6.00 7.76 -40.82 -0.32 5.68 16 36 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.50 6.90 -51.93 -0.36 0.14 16 39 H 0.14 0.77 5.42 -52.49 -0.28 0.49 16 40 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 41 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.04 0.99 7.50 -51.93 -0.39 0.61 16 45 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -34.41 395.22 -8.01 -42.42 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.32 Total: 4.44 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -4.74 Total: -1.50 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 1.65 Total: -52.88 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.53 Total: -13.38 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.41 -8.01 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.596 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds