Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39756 * 125.83791 * 2 1 4 4 C 1.36107 * 107.82905 * 180.14205 * 3 2 1 5 5 N 1.39470 * 126.21753 * 179.84684 * 4 3 2 6 6 C 1.34774 * 120.00122 * 359.69017 * 5 4 3 7 7 O 1.21290 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99918 * 180.02562 * 6 5 4 9 9 H 1.08990 * 109.47680 * 54.99423 * 8 6 5 10 10 C 1.53000 * 109.46639 * 294.99343 * 8 6 5 11 11 O 1.42902 * 109.47004 * 175.00195 * 8 6 5 12 12 C 1.35712 * 116.99749 * 204.99980 * 11 8 6 13 13 C 1.38645 * 120.14574 * 354.50226 * 12 11 8 14 14 C 1.38112 * 120.08695 * 179.71948 * 13 12 11 15 15 C 1.38513 * 120.38883 * 0.56184 * 14 13 12 16 16 C 1.37826 * 120.30022 * 359.71685 * 15 14 13 17 17 C 1.39712 * 119.89562 * 0.02562 * 16 15 14 18 18 C 1.43202 * 120.18563 * 180.02562 * 17 16 15 19 19 N 8.41042 * 104.52843 * 357.23582 * 2 1 3 20 20 N 1.35267 * 107.56511 * 359.57956 * 4 3 2 21 21 C 1.46493 * 126.04651 * 180.22304 * 20 4 3 22 22 C 1.50707 * 109.47178 * 90.00506 * 21 20 4 23 23 H 1.08000 * 119.99264 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00248 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99871 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99984 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47064 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46792 * 119.99902 * 26 24 22 29 29 H 1.48491 * 109.47193 * 239.99931 * 26 24 22 30 30 N 1.30852 * 125.83517 * 179.66753 * 2 1 3 31 31 H 1.09000 * 109.47574 * 270.30305 * 1 2 3 32 32 H 1.09006 * 109.47176 * 30.30457 * 1 2 3 33 33 H 1.09000 * 109.46718 * 150.30017 * 1 2 3 34 34 H 1.07999 * 126.08499 * 359.97438 * 3 2 1 35 35 H 0.97004 * 119.99616 * 179.68814 * 5 4 3 36 36 H 1.09001 * 109.47087 * 60.00546 * 10 8 6 37 37 H 1.09004 * 109.46870 * 180.02562 * 10 8 6 38 38 H 1.09002 * 109.47759 * 300.00135 * 10 8 6 39 39 H 1.08000 * 119.95903 * 359.97438 * 13 12 11 40 40 H 1.07994 * 119.80422 * 180.27621 * 14 13 12 41 41 H 1.08005 * 119.84653 * 179.73933 * 15 14 13 42 42 H 1.07994 * 120.04851 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47371 * 210.00440 * 21 20 4 44 44 H 1.09000 * 109.47508 * 330.00495 * 21 20 4 45 45 H 0.97001 * 120.00237 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7122 -0.0032 5 7 4.7512 1.5275 -0.0073 6 6 4.6156 2.8684 -0.0147 7 8 3.5096 3.3661 -0.0183 8 6 5.8383 3.7493 -0.0197 9 1 6.4777 3.4788 -0.8600 10 6 6.6085 3.5601 1.2887 11 8 5.4402 5.1161 -0.1446 12 6 6.3456 5.9753 -0.6773 13 6 7.6302 5.5416 -0.9673 14 6 8.5489 6.4155 -1.5148 15 6 8.1995 7.7319 -1.7675 16 6 6.9287 8.1815 -1.4801 17 6 5.9881 7.3065 -0.9310 18 6 4.6658 7.7669 -0.6305 19 7 3.6169 8.1320 -0.3926 20 7 3.6092 -0.6404 0.0043 21 6 4.7870 -1.5116 0.0087 22 6 5.1913 -1.8025 1.4311 23 1 4.6270 -1.3809 2.2497 24 6 6.2809 -2.6076 1.6871 25 7 6.9677 -3.1213 0.6901 26 14 6.7816 -2.9688 3.4501 27 1 5.8530 -2.2772 4.3800 28 1 6.7234 -4.4330 3.6911 29 1 8.1661 -2.4839 3.6807 30 7 2.2731 -1.0608 0.0062 31 1 -0.3634 0.0054 1.0276 32 1 -0.3634 0.8873 -0.5186 33 1 -0.3633 -0.8927 -0.5092 34 1 1.9902 2.1597 -0.0004 35 1 5.6358 1.1294 -0.0048 36 1 6.9122 2.5176 1.3840 37 1 7.4927 4.1976 1.2853 38 1 5.9692 3.8306 2.1291 39 1 7.9116 4.5181 -0.7686 40 1 9.5469 6.0717 -1.7430 41 1 8.9262 8.4089 -2.1919 42 1 6.6608 9.2087 -1.6784 43 1 4.5497 -2.4460 -0.4999 44 1 5.6082 -1.0150 -0.5081 45 1 7.7340 -3.6881 0.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = 66.186276 kcal Electronic energy + Delta-G solvation = -30260.412860 eV Core-core repulsion = 26052.718516 eV Total energy + Delta-G solvation = -4207.694344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28736 -40.70097 -39.32975 -37.82112 -36.46796 -34.90585 -33.86570 -32.72556 -32.08438 -31.50890 -30.33447 -29.18527 -28.23679 -26.09864 -25.19552 -24.31284 -23.27581 -22.75746 -21.22888 -19.91887 -19.84169 -19.23056 -18.05272 -17.31394 -16.86532 -16.40520 -16.17995 -16.11032 -15.52817 -15.21752 -14.97824 -14.83404 -14.52968 -14.24884 -14.06015 -13.73188 -13.53725 -13.33806 -13.01789 -12.90416 -12.83188 -12.69699 -12.62897 -12.54032 -12.22336 -12.11119 -11.99307 -11.81435 -11.63322 -11.56083 -11.37176 -11.11820 -10.96851 -10.48998 -10.40464 -9.97550 -9.85120 -9.57788 -9.46700 -8.79283 -8.71420 -7.98811 -7.52595 -6.40192 -4.48833 0.40414 0.88064 2.07394 2.09167 2.59662 2.71808 2.94740 3.06810 3.09590 3.19498 3.25455 3.51905 3.54548 3.66524 3.69752 4.17092 4.19904 4.33810 4.43756 4.47207 4.53442 4.69751 4.84768 4.93234 4.97465 5.26548 5.28632 5.31182 5.32209 5.58213 5.68399 5.76018 5.80975 5.94956 6.02216 6.07772 6.10544 6.14920 6.20761 6.33695 6.58770 6.75721 6.79752 6.97995 7.40401 7.42358 7.49400 7.54856 7.72582 7.80782 8.14435 8.55199 8.64364 9.19233 10.66854 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.002863 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.665939 B = 9775.933691 C =11891.094758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.633 5.633 6 C 0.522 3.478 7 O -0.487 6.487 8 C 0.073 3.927 9 H 0.109 0.891 10 C -0.182 4.182 11 O -0.277 6.277 12 C 0.180 3.820 13 C -0.214 4.214 14 C -0.047 4.047 15 C -0.160 4.160 16 C -0.033 4.033 17 C -0.059 4.059 18 C 0.258 3.742 19 N -0.411 5.411 20 N -0.343 5.343 21 C 0.256 3.744 22 C -0.541 4.541 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 N -0.282 5.282 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.417 0.583 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 18.460 -5.310 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.282 5.282 6 C 0.306 3.694 7 O -0.359 6.359 8 C 0.013 3.987 9 H 0.126 0.874 10 C -0.239 4.239 11 O -0.188 6.188 12 C 0.131 3.869 13 C -0.233 4.233 14 C -0.066 4.066 15 C -0.178 4.178 16 C -0.053 4.053 17 C -0.063 4.063 18 C -0.057 4.057 19 N -0.086 5.086 20 N -0.128 5.128 21 C 0.138 3.862 22 C -0.579 4.579 23 H 0.084 0.916 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.732 3.268 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.206 1.206 30 N -0.108 5.108 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.254 0.746 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.083 17.971 -4.908 19.310 hybrid contribution 1.653 -0.130 0.848 1.863 sum 6.736 17.842 -4.059 19.498 Atomic orbital electron populations 1.20032 0.87499 1.02401 1.02236 1.22035 0.96576 0.90949 1.01716 1.21293 0.89099 1.00544 1.21532 1.17812 0.87647 0.83341 1.03341 1.42497 1.08594 1.04884 1.72190 1.19843 0.90469 0.81546 0.77580 1.90715 1.26068 1.73409 1.45672 1.22197 0.94635 0.80299 1.01552 0.87386 1.22422 1.00900 1.04665 0.95910 1.86211 1.39413 1.17387 1.75791 1.19002 0.88485 0.88626 0.90835 1.21343 0.92629 1.02111 1.07168 1.21222 0.99164 0.92884 0.93288 1.21021 0.96431 0.96426 1.03968 1.21051 0.91869 0.98779 0.93599 1.15308 0.88698 0.91670 1.10670 1.25285 0.92556 0.93919 0.93969 1.81224 1.10781 1.08133 1.08494 1.49367 1.06611 1.02010 1.54850 1.19640 0.77770 0.89818 0.98969 1.21386 1.13243 1.31947 0.91323 0.91613 1.24932 0.95708 0.94815 0.98193 1.69921 1.19186 1.32499 1.31094 0.86315 0.78330 0.78547 0.83632 1.19525 1.20507 1.20600 1.77376 0.86047 1.21705 1.25630 0.91244 0.91099 0.91482 0.82166 0.74612 0.89125 0.90070 0.90135 0.83921 0.84714 0.84698 0.84258 0.92463 0.93831 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.58 16 2 C 0.05 1.05 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.03 9.58 -39.78 -0.38 -6.41 16 4 C 0.30 6.19 7.66 -153.16 -1.17 5.02 16 5 N -0.63 -10.40 5.38 -11.46 -0.06 -10.46 16 6 C 0.52 8.05 7.14 -10.99 -0.08 7.97 16 7 O -0.49 -9.35 13.64 -14.31 -0.20 -9.55 16 8 C 0.07 0.79 2.63 -27.88 -0.07 0.72 16 9 H 0.11 0.83 6.31 -51.93 -0.33 0.50 16 10 C -0.18 -1.63 9.13 37.16 0.34 -1.29 16 11 O -0.28 -3.48 8.77 -38.70 -0.34 -3.82 16 12 C 0.18 1.76 6.60 -38.71 -0.26 1.50 16 13 C -0.21 -1.45 8.24 -39.48 -0.33 -1.78 16 14 C -0.05 -0.23 10.03 -39.53 -0.40 -0.63 16 15 C -0.16 -0.76 10.02 -39.63 -0.40 -1.16 16 16 C -0.03 -0.20 9.76 -39.18 -0.38 -0.59 16 17 C -0.06 -0.57 5.75 -106.70 -0.61 -1.18 16 18 C 0.26 3.31 14.87 -22.48 -0.33 2.97 16 19 N -0.41 -6.33 18.54 41.83 0.78 -5.56 16 20 N -0.34 -7.84 3.60 -61.57 -0.22 -8.06 16 21 C 0.26 6.15 6.01 -5.19 -0.03 6.12 16 22 C -0.54 -14.00 9.39 -34.44 -0.32 -14.33 16 23 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 24 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -23.40 13.29 55.43 0.74 -22.66 16 26 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 30 N -0.28 -6.50 12.57 33.65 0.42 -6.08 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.16 3.29 5.83 -52.49 -0.31 2.98 16 35 H 0.42 5.99 7.75 -40.82 -0.32 5.67 16 36 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 37 H 0.08 0.54 6.91 -51.93 -0.36 0.18 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.14 0.73 5.43 -52.49 -0.28 0.45 16 40 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.04 0.99 7.50 -51.93 -0.39 0.60 16 45 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -34.36 395.21 -8.01 -42.37 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.32 Total: 4.47 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -4.74 Total: -1.56 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 1.65 Total: -52.82 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.53 Total: -13.36 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.36 -8.01 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.558 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds